Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8404831.1

Orthogroup ID

OG0013917

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 975

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8404831.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

acggtacatgaaggtcggatctatcagttgaagctgttttgtgataaagattacccagagaagccaccaactgttcgatttcattcacggattaacatgacttgtgtcaaccatgaaactggagtggtggattcgaagaaatttgggcttcttgcaaactggcagagagagtacaccatggaggatattcttacacagctgaaaaaggagatggcagctgcacataaccggaagttggtccagcccccggaaggtacctacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04624 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

88

Amino Acids

10.34

Weight (kDa)

8.6

Isoelectric Point (pI)

22.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52560 AT3G52560 AT3G52560 AT3G52560
fragaria_vesca	FvH4_6g19850
malus_domestica	MD12G1034000.v1.1 MD14G1035400.v1.1
prunus_persica	Prupe.7G098800_v2.0.a1 Prupe.7G098800_v2.0.a1
pyrus_communis	pycom14g03110
rosa_chinensis	RchiOBHm_Chr3g0475251
rosa_laevigata	RLG00000023856
rosa_multiflora	Rmu_co8404831.1_g000001 Rmu_sc0003093.1_g000044
rosa_roxburghii	Rroxscaffold_6G00406430
rosa_rugosa	Rorug03G0147500
rosa_wichuraiana	Rw3G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	3 cut(s)	6, 173, 256
AfiI	CCNNNNNNNGG	3 cut(s)	235, 247, 251
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	3 cut(s)	34, 199, 218
AluI	AGCT	3 cut(s)	34, 199, 218
AlwI	GGATC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	215, 218
ApoI	RAATTY	1 cut(s)	140
Asp718I	GGTACC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	205, 227
BccI	CCATC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	265
BisI	GCNGC	2 cut(s)	216, 219
BlsI	GCNGC	2 cut(s)	217, 220
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	248
BoxI	GACNNNNGTC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	177, 246
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 247, 251
Bse1I	ACTGG	2 cut(s)	124, 164
BseDI	CCNNGG	2 cut(s)	177, 246
BseLI	CCNNNNNNNGG	3 cut(s)	235, 247, 251
BseNI	ACTGG	2 cut(s)	124, 164
BseXI	GCAGC	2 cut(s)	205, 227
BsgI	GTGCAG	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	229, 248
BslI	CCNNNNNNNGG	3 cut(s)	235, 247, 251
Bsp119I	TTCGAA	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	124, 164
BssECI	CCNNGG	2 cut(s)	177, 246
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	4, 73
BstBI	TTCGAA	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstPAI	GACNNNNGTC	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	205, 227
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	5, 172, 255
CviAII	CATG	4 cut(s)	8, 97, 113, 178
CviJI	RGCY	6 cut(s)	34, 64, 148, 199, 218, 244
CviKI_1	RGCY	6 cut(s)	34, 64, 148, 199, 218, 244
CviQI	GTAC	3 cut(s)	5, 172, 255
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	4 cut(s)	11, 100, 116, 181
FaiI	YATR	5 cut(s)	9, 98, 114, 179, 225
FatI	CATG	4 cut(s)	7, 96, 112, 177
Fnu4HI	GCNGC	2 cut(s)	216, 219
Fsp4HI	GCNGC	2 cut(s)	216, 219
FspBI	CTAG	1 cut(s)	265
GluI	GCNGC	2 cut(s)	216, 219
GsuI	CTGGAG	1 cut(s)	141
HapII	CCGG	2 cut(s)	229, 248
Hin1II	CATG	4 cut(s)	11, 100, 116, 181
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	229, 248
Hpy166II	GTNNAC	2 cut(s)	109, 174
Hpy188I	TCNGA	1 cut(s)	18
Hpy8I	GTNNAC	2 cut(s)	109, 174
HpyAV	CCTTC	2 cut(s)	5, 245
HpyCH4III	ACNGT	2 cut(s)	4, 73
HpyCH4V	TGCA	2 cut(s)	155, 221
Hsp92II	CATG	4 cut(s)	11, 100, 116, 181
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	69, 105, 145, 242, 254, 261
Lsp1109I	GCAGC	2 cut(s)	205, 227
MaeI	CTAG	1 cut(s)	265
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	1 cut(s)	175
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	2 cut(s)	199, 218
MspI	CCGG	2 cut(s)	229, 248
MspR9I	CCNGG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	4 cut(s)	11, 100, 116, 181
NlaIV	GGNNCC	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	217, 220
PshAI	GACNNNNGTC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	199, 218
RsaI	GTAC	3 cut(s)	6, 173, 256
RsaNI	GTAC	3 cut(s)	5, 172, 255
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	216, 219
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	6 cut(s)	16, 36, 201, 220, 256, 260
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	1 cut(s)	238
Sse9I	AATT	1 cut(s)	140
SspMI	CTAG	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	4, 73
TaqI	TCGA	2 cut(s)	76, 134
TasI	AATT	1 cut(s)	140
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseI	GCWGC	2 cut(s)	215, 218
TspDTI	ATGAA	3 cut(s)	24, 71, 129
TspGWI	ACGGA	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	140
XspI	CTAG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.