AT3G52610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014060
Physical Location & Seq
Forward (+)
19510446 .. 19512714
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52610.1

Sequence Viewer

Length: 1428 bp
ATGAGTGAGCCAAATCGGGTACCCAAATCCATGACCCGACCCGTCGGAGGAACCGAGTACAGCTGGTGCAGAGCGATTGACGGCGGCACAGGTATCGCCGTCATAGCTCTCTTACTTTCCCGAACACCAAAACTCCAAAATCTCCAAAATACCCTCGACAAACTCCAGATTTACCACCCCACTCTCCGTTCCAACATCCGTTTCGACGCATCCGCTAACTCCTTCTCCTTCGTCGTTACGTCCGCCGCCGATTCTCACGTCGAAATCCATCCCTTCGATTCCGTATCTACGGCTCAGATCATCCGAGACAGCGACGATCCATGCGCTGATCCACACAGAATCATCCTAGAACACGAGATGAACAAAAACACGTGGATCAATCCACACCGTTGGATCAAATCCGAGTCACGCGTGTTTATCGTCAGTCTCTACGATCTAACCGACGACGGAGAGCAACGGATACTCACATTTCGGCTGAACACGGCGGCGGTCGATCGTACTGCGGCGGTTACGCTTCTGAGAGAGTTTATGAAAGAGACGGCGGCTGATGGTTTCGGAAACGGTCCCGTGGTGGCGGCGACGGAGACGGCGGTGGGATTAGGTAAGGCGATAGAGGAGCTGATTCCGAGTGGGAAAGGGGATAAACCGTTCTGGGCGCGTGGCATCGACGTGCTTGGTTACTCGTTAAACGCGTTTCGGTTTTCGAATTTGAATTTCGTGGACGCAGAGAATTCGAACCGGAGATCGCAATTGGTGAGGCTCAAATTGGATAGAGATCAGACTCTCAAACTTGTGGCTGGATGCAAGGCAAGAGGGTTAAAGTTATGGGCGGCATTAGCGTCCTCGGCGTTAATCGCTGCGTATTCCTCGAAGAATCTACCGCCATACCAAGGAGAGAAATACGCCGTGGTGACTCTTTCGGATTGTCGTTCCATTCTTGAACCTCCTCTTACTTCAAATGACTTTGGTTTCTACCATGCAGGGATCCTTCATACACACGATTTAACCGGAGAAGAAAAGCTCTGGGACCTAGCCAAAAGATGCTACGACTCGTTCACATCCTCCAAGAACTCGAACAAGCAGTTCACTGATATGTCAGATCTCAATTTCTTAATGTGCAAGGCCATAGAGAATCCTAATCTCACGCCTTCCTCTTCTCTGAGAACCGCTTTCATCTCCATATTTGAAGATCCTGTTATCGACGAGTCTCCAGAGCCTGAATTGGCTTCTCTTGGGGTGCAAGATTACATTGGATGCGCGTCTATCCACGGGGTTGGACCGTCGGTTGCGGTTTTCGATGCGCTTAGGGATGGAAAATTGGACTGTGCGTTTGTGTATCCTTCGCCATTGCATTCAAGAGAGCAGATGGATGGGCTGATTCAACATATGAAAACTATTCTTTTGGAAGGATCTGCTTCTTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AATase

Protein Analysis

475

Amino Acids

52.38

Weight (kDa)

5.78

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PapA_C PF16911 247 - 350 6.8e-06 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014060)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52610
fragaria_vesca FvH4_6g19190
malus_domestica MD12G1027700.v1.1
prunus_persica Prupe.7G103700_v2.0.a1 Prupe.7G103700_v2.0.a1 Prupe.7G103900_v2.0.a1
pyrus_communis pycom12g02650
rosa_chinensis RchiOBHm_Chr3g0474311
rosa_laevigata RLG00000023933
rosa_multiflora Rmu_sc0004507.1_g000012
rosa_roxburghii Rroxscaffold_6G00407370
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190700 Rh3BG219900 Rh3CG215100 Rh3DG215600
rosa_wichuraiana Rw3G017400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 4 cut(s) 411, 658, 692, 1259
AclWI GGATC 8 cut(s) 311, 323, 383, 401, 979, 992, 1184, 1417
AcsI RAATTY 3 cut(s) 706, 712, 730
AcvI CACGTG 1 cut(s) 372
AfaI GTAC 3 cut(s) 21, 59, 499
AfiI CCNNNNNNNGG 2 cut(s) 47, 890
AflIII ACRYGT 3 cut(s) 369, 409, 690
AgsI TTSAA 6 cut(s) 712, 941, 957, 1187, 1356, 1382
AjiI CACGTC 2 cut(s) 259, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 632, 664
AluBI AGCT 4 cut(s) 63, 107, 619, 1021
AluI AGCT 4 cut(s) 63, 107, 619, 1021
Alw26I GTCTC 5 cut(s) 300, 431, 530, 578, 1212
AlwI GGATC 8 cut(s) 311, 323, 383, 401, 979, 992, 1184, 1417
AlwNI CAGNNNCTG 1 cut(s) 1217
AoxI GGCC 1 cut(s) 1122
ApeKI GCWGC 1 cut(s) 857
ApoI RAATTY 3 cut(s) 706, 712, 730
ArsI GACNNNNNNTTYG 2 cut(s) 1313, 1345
Asp718I GGTACC 1 cut(s) 19
AspLEI GCGC 4 cut(s) 326, 658, 1259, 1303
AspS9I GGNCC 3 cut(s) 563, 1027, 1277
AsuHPI GGTGA 2 cut(s) 766, 922
AsuII TTCGAA 2 cut(s) 704, 734
AvaII GGWCC 3 cut(s) 563, 1027, 1277
BamHI GGATCC 1 cut(s) 984
BanI GGYRCC 1 cut(s) 19
BauI CACGAG 1 cut(s) 353
BbrPI CACGTG 1 cut(s) 372
BbvI GCAGC 1 cut(s) 844
BccI CCATC 5 cut(s) 276, 542, 1304, 1360, 1364
BceAI ACGGC 7 cut(s) 83, 97, 306, 498, 555, 603, 890
BcgI CGANNNNNNTGC 6 cut(s) 76, 110, 482, 516, 714, 748
BciVI GTATCC 2 cut(s) 453, 1347
BcoDI GTCTC 5 cut(s) 300, 431, 530, 578, 1212
BfaI CTAG 2 cut(s) 347, 1031
BfuI GTATCC 2 cut(s) 453, 1347
BglII AGATCT 1 cut(s) 1099
BisI GCNGC 8 cut(s) 85, 246, 486, 504, 543, 576, 831, 858
BlsI GCNGC 8 cut(s) 86, 247, 487, 505, 544, 577, 832, 859
Bme18I GGWCC 3 cut(s) 563, 1027, 1277
BmgBI CACGTC 2 cut(s) 259, 670
BmgT120I GGNCC 3 cut(s) 563, 1027, 1277
BmiI GGNNCC 5 cut(s) 21, 52, 565, 986, 1028
BmsI GCATC 6 cut(s) 218, 672, 791, 1031, 1244, 1288
BpmI CTGGAG 2 cut(s) 149, 1194
Bpu10I CCTNAGC 1 cut(s) 1304
Bpu14I TTCGAA 2 cut(s) 704, 734
BsaAI YACGTR 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 567, 843, 889, 906, 1267
BsaWI WCCGGW 2 cut(s) 738, 1007
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 890
Bse3DI GCAATG 1 cut(s) 1346
Bse8I GATNNNNATC 1 cut(s) 774
BseDI CCNNGG 5 cut(s) 567, 843, 889, 906, 1267
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 2 cut(s) 47, 890
BseMI GCAATG 1 cut(s) 1346
BseMII CTCAG 3 cut(s) 308, 509, 1151
BseRI GAGGAG 2 cut(s) 629, 936
BseXI GCAGC 1 cut(s) 844
BsgI GTGCAG 1 cut(s) 88
Bsh1236I CGCG 4 cut(s) 411, 658, 692, 1259
Bsh1285I CGRYCG 2 cut(s) 492, 496
BshFI GGCC 1 cut(s) 1124
BshNI GGYRCC 1 cut(s) 19
BsiEI CGRYCG 2 cut(s) 492, 496
BsiSI CCGG 2 cut(s) 739, 1008
BslFI GGGAC 2 cut(s) 549, 1040
BslI CCNNNNNNNGG 2 cut(s) 47, 890
BsmAI GTCTC 5 cut(s) 300, 431, 530, 578, 1212
BsmBI CGTCTC 2 cut(s) 530, 578
BsmFI GGGAC 2 cut(s) 549, 1040
BsmI GAATGC 1 cut(s) 1351
BsnI GGCC 1 cut(s) 1124
Bsp119I TTCGAA 2 cut(s) 704, 734
BspANI GGCC 1 cut(s) 1124
BspCNI CTCAG 3 cut(s) 307, 510, 1152
BspFNI CGCG 4 cut(s) 411, 658, 692, 1259
BspLI GGNNCC 5 cut(s) 21, 52, 565, 986, 1028
BspPI GGATC 8 cut(s) 311, 323, 383, 401, 979, 992, 1184, 1417
BspT104I TTCGAA 2 cut(s) 704, 734
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 1346
BssECI CCNNGG 5 cut(s) 567, 843, 889, 906, 1267
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 889
Bst2BI CACGAG 1 cut(s) 353
Bst4CI ACNGT 5 cut(s) 389, 563, 648, 1281, 1325
Bst6I CTCTTC 1 cut(s) 1159
BstBAI YACGTR 1 cut(s) 372
BstBI TTCGAA 2 cut(s) 704, 734
BstDEI CTNAG 4 cut(s) 294, 518, 1160, 1304
BstDSI CCRYGG 3 cut(s) 567, 906, 1267
BstFNI CGCG 4 cut(s) 411, 658, 692, 1259
BstHHI GCGC 4 cut(s) 326, 658, 1259, 1303
BstMAI GTCTC 5 cut(s) 300, 431, 530, 578, 1212
BstMCI CGRYCG 2 cut(s) 492, 496
BstMWI GCNNNNNNNGC 4 cut(s) 104, 836, 845, 854
BstUI CGCG 4 cut(s) 411, 658, 692, 1259
BstV1I GCAGC 1 cut(s) 844
BstX2I RGATCY 4 cut(s) 984, 1099, 1189, 1409
BstXI CCANNNNNNTGG 2 cut(s) 390, 1274
BstYI RGATCY 4 cut(s) 984, 1099, 1189, 1409
BsuI GTATCC 2 cut(s) 453, 1347
BsuRI GGCC 1 cut(s) 1124
BtgI CCRYGG 3 cut(s) 567, 906, 1267
BtrI CACGTC 2 cut(s) 259, 670
BtsIMutI CAGTG 1 cut(s) 1086
CaiI CAGNNNCTG 1 cut(s) 1217
CfoI GCGC 4 cut(s) 326, 658, 1259, 1303
Cfr13I GGNCC 3 cut(s) 563, 1027, 1277
CseI GACGC 4 cut(s) 215, 731, 828, 1248
Csp6I GTAC 3 cut(s) 20, 58, 498
CviAII CATG 3 cut(s) 31, 321, 977
CviQI GTAC 3 cut(s) 20, 58, 498
DdeI CTNAG 4 cut(s) 294, 518, 1160, 1304
Eam1104I CTCTTC 1 cut(s) 1159
EarI CTCTTC 1 cut(s) 1159
EciI GGCGGA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 889
Eco47I GGWCC 3 cut(s) 563, 1027, 1277
Eco72I CACGTG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 1027
EcoRI GAATTC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 889
Esp3I CGTCTC 2 cut(s) 530, 578
FaeI CATG 3 cut(s) 34, 324, 980
FaqI GGGAC 2 cut(s) 549, 1040
FatI CATG 3 cut(s) 30, 320, 976
FauNDI CATATG 1 cut(s) 1386
Fnu4HI GCNGC 8 cut(s) 85, 246, 486, 504, 543, 576, 831, 858
Fsp4HI GCNGC 8 cut(s) 85, 246, 486, 504, 543, 576, 831, 858
FspBI CTAG 2 cut(s) 347, 1031
GlaI GCGC 4 cut(s) 325, 657, 1258, 1302
GluI GCNGC 8 cut(s) 85, 246, 486, 504, 543, 576, 831, 858
GsuI CTGGAG 2 cut(s) 149, 1194
HaeIII GGCC 1 cut(s) 1124
HapII CCGG 2 cut(s) 739, 1008
HgaI GACGC 4 cut(s) 215, 731, 828, 1248
HhaI GCGC 4 cut(s) 326, 658, 1259, 1303
Hin1II CATG 3 cut(s) 34, 324, 980
Hin6I GCGC 4 cut(s) 324, 656, 1257, 1301
HinP1I GCGC 4 cut(s) 324, 656, 1257, 1301
HpaII CCGG 2 cut(s) 739, 1008
HphI GGTGA 2 cut(s) 766, 922
Hpy166II GTNNAC 3 cut(s) 721, 1056, 1086
Hpy188III TCNNGA 5 cut(s) 120, 166, 938, 1211, 1356
Hpy8I GTNNAC 3 cut(s) 721, 1056, 1086
HpyAV CCTTC 7 cut(s) 232, 238, 283, 998, 1158, 1350, 1400
HpyCH4III ACNGT 5 cut(s) 389, 563, 648, 1281, 1325
HpyCH4IV ACGT 4 cut(s) 239, 258, 371, 669
HpyCH4V TGCA 6 cut(s) 69, 804, 980, 1119, 1240, 1351
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 836, 845, 854
HpyF3I CTNAG 4 cut(s) 294, 518, 1160, 1304
HpySE526I ACGT 4 cut(s) 239, 258, 371, 669
Hsp92II CATG 3 cut(s) 34, 324, 980
HspAI GCGC 4 cut(s) 324, 656, 1257, 1301
KpnI GGTACC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 1 cut(s) 844
LweI GCATC 6 cut(s) 218, 672, 791, 1031, 1244, 1288
MaeI CTAG 2 cut(s) 347, 1031
MaeII ACGT 4 cut(s) 239, 258, 371, 669
MaeIII GTNAC 5 cut(s) 235, 405, 508, 677, 910
MboII GAAGA 5 cut(s) 883, 1025, 1146, 1199, 1410
MfeI CAATTG 1 cut(s) 749
MflI RGATCY 4 cut(s) 984, 1099, 1189, 1409
MluCI AATT 8 cut(s) 706, 712, 730, 749, 764, 1105, 1220, 1316
MluI ACGCGT 2 cut(s) 409, 690
MlyI GAGTC 5 cut(s) 413, 775, 907, 1043, 1214
MmeI TCCRAC 4 cut(s) 25, 216, 371, 1255
MseI TTAA 5 cut(s) 686, 818, 851, 1004, 1112
MslI CAYNNNNRTG 2 cut(s) 668, 1091
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 2 cut(s) 739, 1008
MunI CAATTG 1 cut(s) 749
Mva1269I GAATGC 1 cut(s) 1351
MvnI CGCG 4 cut(s) 411, 658, 692, 1259
MwoI GCNNNNNNNGC 4 cut(s) 104, 836, 845, 854
NdeI CATATG 1 cut(s) 1386
NlaIII CATG 3 cut(s) 34, 324, 980
NlaIV GGNNCC 5 cut(s) 21, 52, 565, 986, 1028
NmeAIII GCCGAG 1 cut(s) 824
NmuCI GTSAC 2 cut(s) 405, 910
NspV TTCGAA 2 cut(s) 704, 734
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 438, 689
PctI GAATGC 1 cut(s) 1351
PfeI GAWTC 7 cut(s) 251, 278, 339, 622, 874, 1132, 1378
PkrI GCNGC 8 cut(s) 86, 247, 487, 505, 544, 577, 832, 859
Ple19I CGATCG 1 cut(s) 496
PleI GAGTC 5 cut(s) 412, 775, 907, 1043, 1213
PmaCI CACGTG 1 cut(s) 372
PmlI CACGTG 1 cut(s) 372
PpsI GAGTC 5 cut(s) 412, 775, 907, 1043, 1213
Ppu21I YACGTR 1 cut(s) 372
PpuMI RGGWCCY 1 cut(s) 1027
Psp5II RGGWCCY 1 cut(s) 1027
PspCI CACGTG 1 cut(s) 372
PspN4I GGNNCC 5 cut(s) 21, 52, 565, 986, 1028
PspPI GGNCC 3 cut(s) 563, 1027, 1277
PspPPI RGGWCCY 1 cut(s) 1027
PstNI CAGNNNCTG 1 cut(s) 1217
PsuI RGATCY 4 cut(s) 984, 1099, 1189, 1409
PvuI CGATCG 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 3 cut(s) 21, 59, 499
RsaNI GTAC 3 cut(s) 20, 58, 498
RseI CAYNNNNRTG 2 cut(s) 668, 1091
SaqAI TTAA 5 cut(s) 686, 818, 851, 1004, 1112
SatI GCNGC 8 cut(s) 85, 246, 486, 504, 543, 576, 831, 858
Sau96I GGNCC 3 cut(s) 563, 1027, 1277
SchI GAGTC 5 cut(s) 413, 775, 907, 1043, 1214
SfaNI GCATC 6 cut(s) 218, 672, 791, 1031, 1244, 1288
SfuI TTCGAA 2 cut(s) 704, 734
SinI GGWCC 3 cut(s) 563, 1027, 1277
SmiMI CAYNNNNRTG 2 cut(s) 668, 1091
Sse9I AATT 8 cut(s) 706, 712, 730, 749, 764, 1105, 1220, 1316
SspMI CTAG 2 cut(s) 347, 1031
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 5 cut(s) 389, 563, 648, 1281, 1325
TaiI ACGT 4 cut(s) 242, 261, 374, 672
TasI AATT 8 cut(s) 706, 712, 730, 749, 764, 1105, 1220, 1316
TatI WGTACW 1 cut(s) 57
TauI GCSGC 7 cut(s) 87, 248, 488, 506, 545, 578, 833
TfiI GAWTC 7 cut(s) 251, 278, 339, 622, 874, 1132, 1378
Tru1I TTAA 5 cut(s) 686, 818, 851, 1004, 1112
Tru9I TTAA 5 cut(s) 686, 818, 851, 1004, 1112
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 2 cut(s) 405, 910
TseI GCWGC 1 cut(s) 857
Tsp45I GTSAC 2 cut(s) 405, 910
TspDTI ATGAA 5 cut(s) 374, 545, 980, 1162, 1403
TspGWI ACGGA 6 cut(s) 176, 188, 271, 462, 472, 596
TspRI CASTG 1 cut(s) 1093
VpaK11BI GGWCC 3 cut(s) 563, 1027, 1277
XapI RAATTY 3 cut(s) 706, 712, 730
XspI CTAG 2 cut(s) 347, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.