Rh3DG215600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014060
Physical Location & Seq
Reverse (-)
19835538 .. 19840199
4662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG215600.1

Sequence Viewer

Length: 1008 bp
ATGTCAGACCAGAACCCCAACCCGGAATCAATGCCCGAGCCCATTGCCCGACCCGTCGGTGGAACCGAGTACAGCTGGTGCAAAGCCGTTCCCGTCGGCACCGGCATAACCGTTCTAGCTTTCCTCCTCACTAAACCCCCAAACATCCCACTTCTCCAAAACGCCCTCCACAACCTCCAAAATTCCCACCCTATCCTCCGCTCCAAGCACCACTTCGATCCCGCCACCAACACCCACTCCTTCCTCACTCCCCCGACTCCCCACCTCCAAATCCAGCCGTTCGATCTCCCATCAACGGCCAGCATTCTCCAGACCCACTCCGCCGTCTCCCCATTCCATCAAATCTTCGAACACGAGCTCAACCTCAACACGTGGCGCGACCCCGATCCTCCGTCGGCCGGCACCGACGTGTTGTTCGCCAGCACCTACACGCTCAGCGAGTCCCAGTGGGCCCTGGTGCTCCGGCTGCACACGTCAGCATGCGACCGCGCGGCGGCGGCGGCGCTGCTGAAGGAGCTGTTGAGGTCGGTTGGGGGAGGAGGGACAGAGAGGGAATTAAAAGGAAATGGGGAGGTTATTTCGGCACTTGAGGATCTGATCCCAAATGGGAAGGCGAACAAGCCGTTCTGGGCGCGTGGGGTGGACATGCTTGGGTACTCTTTGAATTCGTTCAGGCTGTCCAATATAGAGTTCGAAGACGTGAGTTTGCCGAGGACTACCCAGATGGTGAAGTTGCGGCTTAACCCAGAACACACTGATCAGCTTCTTGCTGGTTGCAAGTCCAGAGGAATAAAACTATGCGGGGTGCTGGCAGCTGCTGGATTGATTGCCGCGCATGCCTCTAAGCACCTTCCCGATCATCAATGGGAAAAGTATGCTGTAGTAACGCTTCTTGACTGCCGTTCACTTCTTGATCCGCCACTTTCTGCCAATGATTTTGGTAAGCTCTTGAATTCTATCACCCTTCAAAAAGTCACACCTGAATCTATTGAAGTTTATAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AATase

Protein Analysis

335

Amino Acids

36.65

Weight (kDa)

6.39

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PapA_C PF16911 238 - 316 6.7e-09 Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014060)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52610
fragaria_vesca FvH4_6g19190
malus_domestica MD12G1027700.v1.1
prunus_persica Prupe.7G103700_v2.0.a1 Prupe.7G103700_v2.0.a1 Prupe.7G103900_v2.0.a1
pyrus_communis pycom12g02650
rosa_chinensis RchiOBHm_Chr3g0474311
rosa_laevigata RLG00000023933
rosa_multiflora Rmu_sc0004507.1_g000012
rosa_roxburghii Rroxscaffold_6G00407370
rosa_rugosa Rorug03G0140000
rosa_samantha Rh3AG190700 Rh3BG219900 Rh3CG215100 Rh3DG215600
rosa_wichuraiana Rw3G017400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 98, 401
AccBSI CCGCTC 1 cut(s) 201
AccII CGCG 5 cut(s) 378, 489, 491, 634, 833
AclWI GGATC 5 cut(s) 212, 380, 592, 600, 908
AcoI YGGCCR 2 cut(s) 297, 396
AcsI RAATTY 3 cut(s) 181, 664, 952
AcuI CTGAAG 1 cut(s) 530
AcvI CACGTG 1 cut(s) 372
AfaI GTAC 2 cut(s) 71, 656
AfiI CCNNNNNNNGG 5 cut(s) 22, 59, 295, 398, 493
AflIII ACRYGT 3 cut(s) 369, 408, 471
AgsI TTSAA 4 cut(s) 664, 952, 968, 992
AjiI CACGTC 3 cut(s) 409, 474, 700
AjnI CCWGG 1 cut(s) 453
AjuI GAANNNNNNNTTGG 4 cut(s) 197, 229, 674, 706
AleI CACNNNNGTG 1 cut(s) 407
AluBI AGCT 7 cut(s) 75, 119, 358, 517, 763, 815, 946
AluI AGCT 7 cut(s) 75, 119, 358, 517, 763, 815, 946
Alw21I GWGCWC 2 cut(s) 360, 462
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 5 cut(s) 212, 380, 592, 600, 908
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 3 cut(s) 297, 396, 450
ApaI GGGCCC 1 cut(s) 454
ApeKI GCWGC 4 cut(s) 466, 505, 812, 815
ApoI RAATTY 3 cut(s) 181, 664, 952
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
Asp700I GAANNNNTTC 1 cut(s) 668
AspLEI GCGC 5 cut(s) 378, 491, 505, 634, 835
AspS9I GGNCC 2 cut(s) 450, 451
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 739, 952
AsuII TTCGAA 2 cut(s) 348, 693
AvaI CYCGRG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 2 cut(s) 98, 401
BanII GRGCYC 3 cut(s) 42, 360, 454
BarI GAAGNNNNNNTAC 2 cut(s) 873, 905
BauI CACGAG 1 cut(s) 353
BbrPI CACGTG 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 2 cut(s) 360, 462
BbvI GCAGC 4 cut(s) 453, 492, 802, 824
BccI CCATC 3 cut(s) 298, 345, 718
BceAI ACGGC 6 cut(s) 71, 262, 308, 312, 607, 885
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 1 cut(s) 455
BclI TGATCA 1 cut(s) 757
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 331
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 506
BlpI GCTNAGC 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 23, 455
BmeT110I CYCGRG 1 cut(s) 35
BmgBI CACGTC 3 cut(s) 409, 474, 700
BmgT120I GGNCC 2 cut(s) 450, 451
BmiI GGNNCC 4 cut(s) 64, 100, 403, 452
BmrFI CCNGG 2 cut(s) 23, 455
BmrI ACTGGG 1 cut(s) 439
BmuI ACTGGG 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 434
Bpu14I TTCGAA 2 cut(s) 348, 693
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 453, 710
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 59, 295, 398, 493
Bse118I RCCGGY 2 cut(s) 101, 398
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 453, 710
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 5 cut(s) 22, 59, 295, 398, 493
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 448
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 2 cut(s) 116, 552
BseSI GKGCMC 1 cut(s) 454
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 4 cut(s) 453, 492, 802, 824
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 5 cut(s) 378, 489, 491, 634, 833
Bsh1285I CGRYCG 2 cut(s) 399, 487
BshFI GGCC 3 cut(s) 299, 398, 452
BshNI GGYRCC 2 cut(s) 98, 401
BsiEI CGRYCG 2 cut(s) 399, 487
BsiHKAI GWGCWC 2 cut(s) 360, 462
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 4 cut(s) 23, 102, 399, 463
BslFI GGGAC 2 cut(s) 427, 556
BslI CCNNNNNNNGG 5 cut(s) 22, 59, 295, 398, 493
BsmAI GTCTC 1 cut(s) 331
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 2 cut(s) 427, 556
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 3 cut(s) 299, 398, 452
BsoBI CYCGRG 1 cut(s) 35
Bsp119I TTCGAA 2 cut(s) 348, 693
Bsp120I GGGCCC 1 cut(s) 450
Bsp1286I GDGCHC 4 cut(s) 42, 360, 454, 462
Bsp143I GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
Bsp1720I GCTNAGC 1 cut(s) 434
BspANI GGCC 3 cut(s) 299, 398, 452
BspCNI CTCAG 1 cut(s) 447
BspFNI CGCG 5 cut(s) 378, 489, 491, 634, 833
BspLI GGNNCC 4 cut(s) 64, 100, 403, 452
BspPI GGATC 5 cut(s) 212, 380, 592, 600, 908
BspT104I TTCGAA 2 cut(s) 348, 693
BspT107I GGYRCC 2 cut(s) 98, 401
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 2 cut(s) 101, 398
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 2 cut(s) 101, 398
BssECI CCNNGG 2 cut(s) 453, 710
BssMI GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
BssSI CACGAG 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 372
BstBI TTCGAA 2 cut(s) 348, 693
BstC8I GCNNGC 6 cut(s) 301, 400, 421, 481, 810, 837
BstDEI CTNAG 2 cut(s) 434, 843
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 5 cut(s) 378, 489, 491, 634, 833
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 5 cut(s) 378, 491, 505, 634, 835
BstKTI GATC 8 cut(s) 220, 286, 388, 595, 600, 760, 859, 916
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
BstMCI CGRYCG 2 cut(s) 399, 487
BstMWI GCNNNNNNNGC 5 cut(s) 466, 497, 500, 514, 836
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 3 cut(s) 483, 649, 839
BstSCI CCNGG 2 cut(s) 21, 453
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 5 cut(s) 378, 489, 491, 634, 833
BstV1I GCAGC 4 cut(s) 453, 492, 802, 824
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 3 cut(s) 299, 398, 452
BtrI CACGTC 3 cut(s) 409, 474, 700
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 452, 753
Cac8I GCNNGC 6 cut(s) 301, 400, 421, 481, 810, 837
CaiI CAGNNNCTG 1 cut(s) 818
CfoI GCGC 5 cut(s) 378, 491, 505, 634, 835
Cfr10I RCCGGY 2 cut(s) 101, 398
Cfr13I GGNCC 2 cut(s) 450, 451
Csp6I GTAC 2 cut(s) 70, 655
CviAII CATG 3 cut(s) 480, 646, 836
CviQI GTAC 2 cut(s) 70, 655
DdeI CTNAG 2 cut(s) 434, 843
DpnI GATC 8 cut(s) 219, 285, 387, 594, 599, 759, 858, 915
DpnII GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
EaeI YGGCCR 2 cut(s) 297, 396
EagI CGGCCG 1 cut(s) 396
EciI GGCGGA 2 cut(s) 310, 906
Ecl136II GAGCTC 1 cut(s) 358
EclXI CGGCCG 1 cut(s) 396
Eco24I GRGCYC 3 cut(s) 42, 360, 454
Eco52I CGGCCG 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 530
Eco72I CACGTG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 451
EcoRI GAATTC 2 cut(s) 664, 952
EcoRII CCWGG 1 cut(s) 453
EcoT38I GRGCYC 3 cut(s) 42, 360, 454
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 3 cut(s) 483, 649, 839
FaiI YATR 8 cut(s) 107, 481, 647, 686, 799, 837, 876, 999
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 2 cut(s) 427, 556
FatI CATG 3 cut(s) 479, 645, 835
FauI CCCGC 2 cut(s) 229, 794
FbaI TGATCA 1 cut(s) 757
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 3 cut(s) 42, 360, 454
FspBI CTAG 1 cut(s) 116
GlaI GCGC 5 cut(s) 377, 490, 504, 633, 834
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 3 cut(s) 299, 398, 452
HapII CCGG 4 cut(s) 23, 102, 399, 463
HhaI GCGC 5 cut(s) 378, 491, 505, 634, 835
Hin1II CATG 3 cut(s) 483, 649, 839
Hin6I GCGC 5 cut(s) 376, 489, 503, 632, 833
HinP1I GCGC 5 cut(s) 376, 489, 503, 632, 833
HinfI GANTC 4 cut(s) 26, 256, 440, 983
HpaII CCGG 4 cut(s) 23, 102, 399, 463
HphI GGTGA 2 cut(s) 739, 952
Hpy166II GTNNAC 2 cut(s) 643, 905
Hpy188I TCNGA 2 cut(s) 7, 597
Hpy188III TCNNGA 6 cut(s) 310, 783, 854, 893, 911, 949
Hpy8I GTNNAC 2 cut(s) 643, 905
Hpy99I CGWCG 4 cut(s) 59, 98, 397, 410
HpyAV CCTTC 5 cut(s) 250, 505, 604, 860, 974
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 4 cut(s) 371, 408, 473, 699
HpyCH4V TGCA 3 cut(s) 81, 469, 777
HpyF10VI GCNNNNNNNGC 5 cut(s) 466, 497, 500, 514, 836
HpyF3I CTNAG 2 cut(s) 434, 843
HpySE526I ACGT 4 cut(s) 371, 408, 473, 699
Hsp92II CATG 3 cut(s) 483, 649, 839
HspAI GCGC 5 cut(s) 376, 489, 503, 632, 833
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
LmnI GCTCC 3 cut(s) 206, 465, 514
Lsp1109I GCAGC 4 cut(s) 453, 492, 802, 824
MaeI CTAG 1 cut(s) 116
MaeII ACGT 4 cut(s) 371, 408, 473, 699
MaeIII GTNAC 2 cut(s) 883, 973
MalI GATC 8 cut(s) 219, 285, 387, 594, 599, 759, 858, 915
MbiI CCGCTC 1 cut(s) 201
MboI GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
MboII GAAGA 2 cut(s) 337, 707
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 4 cut(s) 42, 360, 454, 462
MluCI AATT 4 cut(s) 181, 554, 664, 952
MlyI GAGTC 2 cut(s) 250, 449
MroNI GCCGGC 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 2 cut(s) 557, 741
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 2 cut(s) 75, 815
MspI CCGG 4 cut(s) 23, 102, 399, 463
MspR9I CCNGG 2 cut(s) 23, 455
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 5 cut(s) 378, 489, 491, 634, 833
MwoI GCNNNNNNNGC 5 cut(s) 466, 497, 500, 514, 836
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 23
NdeII GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 3 cut(s) 483, 649, 839
NlaIV GGNNCC 4 cut(s) 64, 100, 403, 452
NmeAIII GCCGAG 1 cut(s) 735
NmuCI GTSAC 1 cut(s) 973
NspI RCATGY 3 cut(s) 483, 649, 839
NspV TTCGAA 2 cut(s) 348, 693
OliI CACNNNNGTG 1 cut(s) 407
PaeI GCATGC 2 cut(s) 483, 839
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 1 cut(s) 303
PdiI GCCGGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 2 cut(s) 26, 983
PleI GAGTC 2 cut(s) 250, 448
PmaCI CACGTG 1 cut(s) 372
PmlI CACGTG 1 cut(s) 372
PpsI GAGTC 2 cut(s) 250, 448
Ppu21I YACGTR 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 453
PspCI CACGTG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 4 cut(s) 64, 100, 403, 452
PspOMI GGGCCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 450, 451
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 1 cut(s) 592
PvuII CAGCTG 2 cut(s) 75, 815
RsaI GTAC 2 cut(s) 71, 656
RsaNI GTAC 2 cut(s) 70, 655
RseI CAYNNNNRTG 1 cut(s) 407
SacI GAGCTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 557, 741
Sau3AI GATC 8 cut(s) 217, 283, 385, 592, 597, 757, 856, 913
Sau96I GGNCC 2 cut(s) 450, 451
SchI GAGTC 2 cut(s) 250, 449
ScrFI CCNGG 2 cut(s) 23, 455
SduI GDGCHC 4 cut(s) 42, 360, 454, 462
SfcI CTRYAG 1 cut(s) 879
SfuI TTCGAA 2 cut(s) 348, 693
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SphI GCATGC 2 cut(s) 483, 839
Sse9I AATT 4 cut(s) 181, 554, 664, 952
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 21, 453
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 4 cut(s) 374, 411, 476, 702
TaqI TCGA 4 cut(s) 216, 282, 348, 693
TasI AATT 4 cut(s) 181, 554, 664, 952
TatI WGTACW 1 cut(s) 69
TauI GCSGC 6 cut(s) 494, 497, 500, 503, 739, 833
TfiI GAWTC 2 cut(s) 26, 983
Tru1I TTAA 2 cut(s) 557, 741
Tru9I TTAA 2 cut(s) 557, 741
TscAI CASTG 2 cut(s) 452, 760
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 4 cut(s) 466, 505, 812, 815
Tsp45I GTSAC 1 cut(s) 973
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 2 cut(s) 452, 760
XapI RAATTY 3 cut(s) 181, 664, 952
XceI RCATGY 3 cut(s) 483, 649, 839
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.