Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013992

Physical Location & Seq

Genomic Coordinates Reverse (-)

19565790 .. 19566492

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGAAAGAGTTCTTCCATGGCAGTAGCGGAGAAGATCTCTTGGTACTGTGCAGTGTTTGCCGCCATGATGCTGCTGATGAACTCCTTCCAGGTGGCACAGGAGGGTTCCACGGAGATCGTGGAGAAACAACAGCCGTCAATGATGATCACCGGATATTCTCATCGACGGCCAGCATGCGATGAGATATATGAAGTGAAAGAAGGAGAGACGTTGCAAACGATAAGTGAAAAGTGTGGAGATCCTTACATAGTTGAAGGGAATCCTCATATACATGACCACGATGATCTTTTCCCGGGTCTTCTCATCAGAATCACTCCTTCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

109

Amino Acids

12.18

Weight (kDa)

4.89

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52790
fragaria_vesca	FvH4_6g18311
malus_domestica	MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica	Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis	pycom14g01940
rosa_chinensis	RchiOBHm_Chr3g0472771
rosa_laevigata	RLG00000024054
rosa_roxburghii	Rroxscaffold_6G00408580
rosa_rugosa	Rorug03G0127900
rosa_samantha	Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana	Rw3G016250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 63
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	170
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	73
Asp700I	GAANNNNTTC	2 cut(s)	10, 86
AsuC2I	CCSGG	2 cut(s)	296, 297
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	60
BceAI	ACGGC	2 cut(s)	121, 185
BciT130I	CCWGG	1 cut(s)	92
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	296, 297
BcoDI	GTCTC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	2 cut(s)	63, 74
BlsI	GCNGC	2 cut(s)	64, 75
Bme1390I	CCNGG	3 cut(s)	92, 296, 297
BmeT110I	CYCGRG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	3 cut(s)	92, 296, 297
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpuMI	CCSGG	2 cut(s)	296, 297
BsaJI	CCNNGG	3 cut(s)	18, 111, 295
BsaWI	WCCGGW	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	18, 111, 295
BseXI	GCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	153, 296
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	36, 117, 147, 241, 286
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	29, 63
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	18, 111, 295
BssMI	GATC	5 cut(s)	36, 117, 147, 241, 286
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	174, 178
BstDSI	CCRYGG	2 cut(s)	18, 111
BstKTI	GATC	5 cut(s)	39, 120, 150, 244, 289
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	5 cut(s)	36, 117, 147, 241, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	3 cut(s)	90, 294, 295
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	36, 241
BstYI	RGATCY	2 cut(s)	36, 241
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	2 cut(s)	18, 111
BtgZI	GCGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	174, 178
Cfr9I	CCCGGG	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	4 cut(s)	19, 67, 177, 275
CviJI	RGCY	2 cut(s)	136, 172
CviKI_1	RGCY	2 cut(s)	136, 172
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	5 cut(s)	38, 119, 149, 243, 288
DpnII	GATC	5 cut(s)	36, 117, 147, 241, 286
EaeI	YGGCCR	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	22, 70, 180, 278
FaiI	YATR	9 cut(s)	20, 68, 178, 190, 192, 251, 270, 272, 276
FatI	CATG	4 cut(s)	18, 66, 176, 274
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	63, 74
Fsp4HI	GCNGC	2 cut(s)	63, 74
GluI	GCNGC	2 cut(s)	63, 74
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	2 cut(s)	153, 296
Hin1II	CATG	4 cut(s)	22, 70, 180, 278
HinfI	GANTC	2 cut(s)	262, 312
HpaII	CCGG	2 cut(s)	153, 296
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	4 cut(s)	97, 197, 251, 330
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	53, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	22, 70, 180, 278
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	5 cut(s)	36, 117, 147, 241, 286
LpnPI	CCDG	6 cut(s)	77, 86, 104, 166, 186, 309
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	212
MalI	GATC	5 cut(s)	38, 119, 149, 243, 288
MboI	GATC	5 cut(s)	36, 117, 147, 241, 286
MboII	GAAGA	3 cut(s)	6, 46, 293
MflI	RGATCY	2 cut(s)	36, 241
MnlI	CCTC	2 cut(s)	97, 276
MroXI	GAANNNNTTC	2 cut(s)	10, 86
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	2 cut(s)	153, 296
MspR9I	CCNGG	3 cut(s)	92, 296, 297
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	2 cut(s)	296, 297
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	5 cut(s)	36, 117, 147, 241, 286
NlaIII	CATG	4 cut(s)	22, 70, 180, 278
NlaIV	GGNNCC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PdmI	GAANNNNTTC	2 cut(s)	10, 86
PfeI	GAWTC	2 cut(s)	262, 312
PkrI	GCNGC	2 cut(s)	64, 75
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	2 cut(s)	36, 241
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	273
SatI	GCNGC	2 cut(s)	63, 74
Sau3AI	GATC	5 cut(s)	36, 117, 147, 241, 286
ScrFI	CCNGG	3 cut(s)	92, 296, 297
SetI	ASST	2 cut(s)	96, 215
SfaNI	GCATC	1 cut(s)	60
SmaI	CCCGGG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	273
SphI	GCATGC	1 cut(s)	180
SsiI	CCGC	2 cut(s)	29, 63
StyD4I	CCNGG	3 cut(s)	90, 294, 295
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	166
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	262, 312
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	95, 207
TspGWI	ACGGA	1 cut(s)	128
TspMI	CCCGGG	1 cut(s)	295
TspRI	CASTG	1 cut(s)	60
XceI	RCATGY	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmaI	CCCGGG	1 cut(s)	295
XmnI	GAANNNNTTC	2 cut(s)	10, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.