Rorug03G0127900

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013992
Physical Location & Seq
Forward (+)
10337727 .. 10339793
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0127900.1

Sequence Viewer

Length: 483 bp
ATGCAGGGTGATTTTGTACTTTGCACAAAGTGTTTTGAAAATGGAAACTATGGGAAGAACAAATTGAAGTTAGATTTCAAGTATAACGAGCAGTACGTTGAAAAAGAGTGGTGTGGCACCTTGGGGTTCAATTCTCCAGTTGTTTGCCCAGCAAGCATTTCAGCTGGAGCAGAGGTAGTGGAGCCTCATCTGTCTTTCAAAGAGGTTTCAAATCCACAGAAGCAGAATCTGTTTATCAGTAAGTTGAACGTTTGCTGCGAGATCATTGATTCTATCGATCCAGCTAAGCGGCAAGATCTTAAGCGTGAAACATTGATTGAGCTGCAGGTCGCACCATATAAGGGAAGGAAGGGTGAGTCAAATTGGGGTCTTAACACATCTAGAGAATTACAAGTACTCAATCGTATCTGGAATCTTGAAGAACAGCATGCATCTAATATATCATTGGTAAAAGCACTGAAACGGATCATTCTAAGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

160

Amino Acids

18.26

Weight (kDa)

8.5

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 65 - 108 2.4e-06 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52790
fragaria_vesca FvH4_6g18311
malus_domestica MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis pycom14g01940
rosa_chinensis RchiOBHm_Chr3g0472771
rosa_laevigata RLG00000024054
rosa_roxburghii Rroxscaffold_6G00408580
rosa_rugosa Rorug03G0127900
rosa_samantha Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana Rw3G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 1 cut(s) 289
AclI AACGTT 1 cut(s) 249
AclWI GGATC 2 cut(s) 272, 473
AdeI CACNNNGTG 1 cut(s) 30
AfaI GTAC 3 cut(s) 18, 95, 396
AfiI CCNNNNNNNGG 1 cut(s) 341
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 9 cut(s) 38, 67, 79, 101, 130, 199, 210, 247, 419
AluBI AGCT 3 cut(s) 164, 284, 322
AluI AGCT 3 cut(s) 164, 284, 322
AlwI GGATC 2 cut(s) 272, 473
AlwNI CAGNNNCTG 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 255, 322
AsuHPI GGTGA 2 cut(s) 20, 365
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 242, 309
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 323
BfrI CTTAAG 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 295
BisI GCNGC 3 cut(s) 256, 290, 323
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 257, 291, 324
BmcAI AGTACT 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 118, 183
BmsI GCATC 1 cut(s) 440
BpmI CTGGAG 2 cut(s) 120, 186
Bpu1102I GCTNAGC 1 cut(s) 285
Bsa29I ATCGAT 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 242, 309
BseYI CCCAGC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 341
Bsp143I GATC 4 cut(s) 261, 277, 295, 465
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 289
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 118, 183
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 2 cut(s) 272, 473
BspT107I GGYRCC 1 cut(s) 116
BspTI CTTAAG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 4 cut(s) 261, 277, 295, 465
BssT1I CCWWGG 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 154, 429
BstDEI CTNAG 2 cut(s) 285, 473
BstKTI GATC 4 cut(s) 264, 280, 298, 468
BstMBI GATC 4 cut(s) 261, 277, 295, 465
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 431
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 242, 309
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 455
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 154, 429
CaiI CAGNNNCTG 1 cut(s) 229
ClaI ATCGAT 1 cut(s) 276
Csp6I GTAC 3 cut(s) 17, 94, 395
CviAII CATG 1 cut(s) 428
CviJI RGCY 5 cut(s) 164, 184, 284, 322, 478
CviKI_1 RGCY 5 cut(s) 164, 184, 284, 322, 478
CviQI GTAC 3 cut(s) 17, 94, 395
DdeI CTNAG 2 cut(s) 285, 473
DpnI GATC 4 cut(s) 263, 279, 297, 467
DpnII GATC 4 cut(s) 261, 277, 295, 465
DraIII CACNNNGTG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 431
FaiI YATR 7 cut(s) 51, 84, 337, 339, 429, 440, 481
FatI CATG 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 256, 290, 323
Fsp4HI GCNGC 3 cut(s) 256, 290, 323
FspBI CTAG 1 cut(s) 381
GluI GCNGC 3 cut(s) 256, 290, 323
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 2 cut(s) 120, 186
Hin1II CATG 1 cut(s) 431
HinfI GANTC 4 cut(s) 226, 269, 356, 412
HphI GGTGA 2 cut(s) 20, 365
Hpy188III TCNNGA 3 cut(s) 381, 409, 416
HpyAV CCTTC 2 cut(s) 339, 343
HpyCH4IV ACGT 2 cut(s) 96, 249
HpyCH4V TGCA 4 cut(s) 4, 24, 325, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 2 cut(s) 285, 473
HpySE526I ACGT 2 cut(s) 96, 249
Hsp92II CATG 1 cut(s) 431
Kzo9I GATC 4 cut(s) 261, 277, 295, 465
LmnI GCTCC 2 cut(s) 167, 181
LpnPI CCDG 6 cut(s) 150, 150, 162, 294, 311, 394
Lsp1109I GCAGC 2 cut(s) 242, 309
LweI GCATC 1 cut(s) 440
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 96, 249
MalI GATC 4 cut(s) 263, 279, 297, 467
MboI GATC 4 cut(s) 261, 277, 295, 465
MboII GAAGA 2 cut(s) 67, 431
MflI RGATCY 1 cut(s) 295
MluCI AATT 4 cut(s) 62, 130, 361, 386
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 3 cut(s) 166, 195, 196
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 2 cut(s) 300, 372
MspA1I CMGCKG 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 4 cut(s) 261, 277, 295, 465
NlaIII CATG 1 cut(s) 431
NlaIV GGNNCC 2 cut(s) 118, 183
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 255
PfeI GAWTC 3 cut(s) 226, 269, 412
PkrI GCNGC 3 cut(s) 257, 291, 324
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 118, 183
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 3 cut(s) 18, 95, 396
RsaNI GTAC 3 cut(s) 17, 94, 395
SaqAI TTAA 2 cut(s) 300, 372
SatI GCNGC 3 cut(s) 256, 290, 323
Sau3AI GATC 4 cut(s) 261, 277, 295, 465
ScaI AGTACT 1 cut(s) 396
SchI GAGTC 1 cut(s) 365
SetI ASST 9 cut(s) 99, 122, 166, 177, 207, 252, 286, 324, 330
SfaNI GCATC 1 cut(s) 440
SfcI CTRYAG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 431
Sse9I AATT 4 cut(s) 62, 130, 361, 386
SsiI CCGC 1 cut(s) 289
SspMI CTAG 1 cut(s) 381
StyI CCWWGG 1 cut(s) 120
TaiI ACGT 2 cut(s) 99, 252
TaqI TCGA 1 cut(s) 276
TasI AATT 4 cut(s) 62, 130, 361, 386
TatI WGTACW 2 cut(s) 16, 394
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 3 cut(s) 226, 269, 412
Tru1I TTAA 2 cut(s) 300, 372
Tru9I TTAA 2 cut(s) 300, 372
TscAI CASTG 1 cut(s) 462
TseI GCWGC 2 cut(s) 255, 322
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 1 cut(s) 462
Vha464I CTTAAG 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 380
XceI RCATGY 1 cut(s) 431
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.