Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013992

Physical Location & Seq

Genomic Coordinates Reverse (-)

12101549 .. 12102830

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGTCTGTTTCCACAACTGCAATGGCTGAGAAGATTTCATGGTATTGTGCTTTGTTCTTGGCCCTGATGCTGGTTCTAAGCTGCTGTCAATCAAGCGAAAGCGAGTTCAATTCGAGGATGCTGCAAGTCCAAAGGAGCCGTTTGCACAAGCCCTGTGATGAAATCTACGTGGTTCGTGAAGGCGAGACACTGCACACGATTAGTGAAAAATGCGGAGATCCTTACATAGTTGAAGAGAATCCACACATTCATGACCCTGATGATGTTTTCCCTGGCTTGGTCATTAAGATTACTCCATACAAGCAAAGGATCCTAGTCGAAGAAAAGAAACAAGTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

115

Amino Acids

13.09

Weight (kDa)

5.51

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52790
fragaria_vesca	FvH4_6g18311
malus_domestica	MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica	Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis	pycom14g01940
rosa_chinensis	RchiOBHm_Chr3g0472771
rosa_laevigata	RLG00000024054
rosa_roxburghii	Rroxscaffold_6G00408580
rosa_rugosa	Rorug03G0127900
rosa_samantha	Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana	Rw3G016250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	3 cut(s)	215, 307, 320
AfiI	CCNNNNNNNGG	2 cut(s)	73, 280
AgsI	TTSAA	2 cut(s)	112, 236
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	3 cut(s)	215, 307, 320
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	84, 124
AspS9I	GGNCC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	71, 111
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	85, 125
BlsI	GCNGC	2 cut(s)	86, 126
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	140, 314
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	60, 111
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 280
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	73, 280
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	71, 111
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	73, 280
BsmAI	GTCTC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	220, 312
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	140, 314
BspPI	GGATC	3 cut(s)	215, 307, 320
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	2 cut(s)	220, 312
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	30, 80
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	223, 315
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	220, 312
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	71, 111
BstX2I	RGATCY	2 cut(s)	220, 312
BstYI	RGATCY	2 cut(s)	220, 312
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	191
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	2 cut(s)	42, 254
CviJI	RGCY	6 cut(s)	29, 65, 84, 141, 154, 279
CviKI_1	RGCY	6 cut(s)	29, 65, 84, 141, 154, 279
DdeI	CTNAG	2 cut(s)	30, 80
DpnI	GATC	2 cut(s)	222, 314
DpnII	GATC	2 cut(s)	220, 312
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	45, 257
FaiI	YATR	4 cut(s)	43, 230, 255, 301
FatI	CATG	2 cut(s)	41, 253
Fnu4HI	GCNGC	2 cut(s)	85, 125
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	85, 125
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	85, 125
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	45, 257
HinfI	GANTC	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	179, 254
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	23, 127, 148, 196
HpyF3I	CTNAG	2 cut(s)	30, 80
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	45, 257
Kzo9I	GATC	2 cut(s)	220, 312
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	6 cut(s)	59, 80, 169, 261, 273, 288
Lsp1109I	GCAGC	2 cut(s)	71, 111
LweI	GCATC	2 cut(s)	60, 111
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	171
MalI	GATC	2 cut(s)	222, 314
MboI	GATC	2 cut(s)	220, 312
MboII	GAAGA	3 cut(s)	46, 248, 335
MflI	RGATCY	2 cut(s)	220, 312
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	220, 312
NlaIII	CATG	2 cut(s)	45, 257
NlaIV	GGNNCC	2 cut(s)	140, 314
PagI	TCATGA	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	86, 126
Ppu21I	YACGTR	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	140, 314
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	220, 312
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	85, 125
Sau3AI	GATC	2 cut(s)	220, 312
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	2 cut(s)	86, 174
SfaNI	GCATC	2 cut(s)	60, 111
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	274
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	116, 321
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	2 cut(s)	84, 124
TspDTI	ATGAA	3 cut(s)	30, 177, 242
TspRI	CASTG	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.