MD14G1019800.v1.1

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0013992
Physical Location & Seq
Reverse (-)
1874571 .. 1874906
336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1019800.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGTGTATGTTTTGTCCTCGCCAACAACAATGGCAGCGAAGATTTCCAGGTACTGCGCTTTGTTTGTGGCGGTGATGCTGTTTCTGAGCTGCTGTGAATCGTTATCCGGCGAAAGCGAATATAGGGGAAGGATGGTTCAGCTCCAGATTGATGATGACCATATGGAATACATGCCGTGTGATGAAATTTACGTGGTTCGTGAAGGAGAGACACTGCAAACAATTAGTGAAAAATGTGGTGACCCCTACATCGTTGACGAGAATCCACATATTGATGACTCTGATGATGTTTTTCCTGGCTTGGTTATCAAGATTACTCCATTTAAACAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

112

Amino Acids

12.64

Weight (kDa)

4.39

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52790
fragaria_vesca FvH4_6g18311
malus_domestica MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis pycom14g01940
rosa_chinensis RchiOBHm_Chr3g0472771
rosa_laevigata RLG00000024054
rosa_roxburghii Rroxscaffold_6G00408580
rosa_rugosa Rorug03G0127900
rosa_samantha Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana Rw3G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 186
AfaI GTAC 1 cut(s) 53
AjnI CCWGG 2 cut(s) 47, 295
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 2 cut(s) 90, 142
AluI AGCT 2 cut(s) 90, 142
Alw26I GTCTC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 35, 90
ApoI RAATTY 1 cut(s) 186
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 85, 251
BbvI GCAGC 2 cut(s) 47, 77
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 49, 297
BcoDI GTCTC 1 cut(s) 203
BisI GCNGC 2 cut(s) 36, 91
BlsI GCNGC 2 cut(s) 37, 92
Bme1390I CCNGG 2 cut(s) 49, 297
BmrFI CCNGG 2 cut(s) 49, 297
BmsI GCATC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 193
BseBI CCWGG 2 cut(s) 49, 297
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 47, 77
BsiSI CCGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 203
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 49, 297
BstBAI YACGTR 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 86
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 49, 297
BstNSI RCATGY 1 cut(s) 175
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 47, 295
BstV1I GCAGC 2 cut(s) 47, 77
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 212
CaiI CAGNNNCTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 90, 142, 300
CviKI_1 RGCY 3 cut(s) 90, 142, 300
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 86
DraI TTTAAA 1 cut(s) 325
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 47, 295
FaeI CATG 1 cut(s) 175
FaiI YATR 6 cut(s) 9, 123, 162, 164, 173, 270
FatI CATG 1 cut(s) 171
FauNDI CATATG 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 36, 91
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 2 cut(s) 36, 91
GlaI GCGC 1 cut(s) 58
GluI GCNGC 2 cut(s) 36, 91
GsuI CTGGAG 1 cut(s) 128
HapII CCGG 1 cut(s) 108
HhaI GCGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 98, 262, 278
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 85, 251
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 87, 283
Hpy188III TCNNGA 3 cut(s) 145, 200, 310
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 123, 197
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 6 cut(s) 34, 61, 121, 158, 282, 309
Lsp1109I GCAGC 2 cut(s) 47, 77
LweI GCATC 1 cut(s) 66
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 1 cut(s) 52
MluCI AATT 2 cut(s) 186, 222
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 1 cut(s) 28
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 49, 297
MvaI CCWGG 2 cut(s) 49, 297
NdeI CATATG 1 cut(s) 162
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 175
PfeI GAWTC 2 cut(s) 98, 262
PkrI GCNGC 2 cut(s) 37, 92
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 47, 295
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 47, 295
PstNI CAGNNNCTG 1 cut(s) 54
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 2 cut(s) 36, 91
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 49, 297
SetI ASST 5 cut(s) 53, 92, 144, 195, 335
SfaNI GCATC 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 2 cut(s) 186, 222
SsiI CCGC 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 47, 295
TaiI ACGT 1 cut(s) 195
TasI AATT 2 cut(s) 186, 222
TfiI GAWTC 2 cut(s) 98, 262
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 35, 90
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 1 cut(s) 219
XapI RAATTY 1 cut(s) 186
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.