Prupe.7G113900_v2.0.a1

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013992
Physical Location & Seq
Forward (+)
13955465 .. 13955788
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G113900.1

Sequence Viewer

Length: 324 bp
ATGGCGTGTGTTCTGTGTTCATCAACTGCACTGGCAGAGAAGATTTTGTGGTACTGTGCTTTGTTCTTGGCGCTGATTCTGGTTCTCAGCTGCTGCGAATGGAGCAAAAGCGAATTCACGGCGAAGGTGGTCCAACTCCAAAGGGATCATTTGAACAAGCCCTGTGATGAAATTTATATGGTTGGTGAAGGAGAGACATTGCAGACCATAGTTGAAAAATGTGGAGACCCCTACATTGTTGAGGAGAACCCACATATCCATGACCCTGATGATGTTATCCCTGGCTTGCTCATTAAGATTACTCCATTAATCAAACTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

4.88

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52790
fragaria_vesca FvH4_6g18311
malus_domestica MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis pycom14g01940
rosa_chinensis RchiOBHm_Chr3g0472771
rosa_laevigata RLG00000024054
rosa_roxburghii Rroxscaffold_6G00408580
rosa_rugosa Rorug03G0127900
rosa_samantha Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana Rw3G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 2 cut(s) 113, 171
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 2 cut(s) 154, 215
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 188, 219
AlwI GGATC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 90, 93
ApoI RAATTY 2 cut(s) 113, 171
AseI ATTAAT 1 cut(s) 308
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 77, 80
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 188, 219
BfoI RGCGCY 1 cut(s) 74
BisI GCNGC 2 cut(s) 91, 94
BlsI GCNGC 2 cut(s) 92, 95
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 77, 80
BsgI GTGCAG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 188, 219
Bso31I GGTCTC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 99
BspPI GGATC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 197
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 86, 317
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 2 cut(s) 188, 219
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 77, 80
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 260
CviJI RGCY 3 cut(s) 90, 160, 285
CviKI_1 RGCY 3 cut(s) 90, 160, 285
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 86, 317
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 177, 179, 209, 255, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 91, 94
Fsp4HI GCNGC 2 cut(s) 91, 94
GlaI GCGC 1 cut(s) 72
GluI GCNGC 2 cut(s) 91, 94
HaeII RGCGCY 1 cut(s) 74
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 76
HphI GGTGA 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 118, 182
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 29, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 2 cut(s) 86, 317
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 6 cut(s) 17, 65, 175, 267, 279, 294
Lsp1109I GCAGC 2 cut(s) 77, 80
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 1 cut(s) 52
MluCI AATT 2 cut(s) 113, 171
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 1 cut(s) 235
MseI TTAA 2 cut(s) 294, 308
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 263
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 92, 95
PshBI ATTAAT 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 93
PvuII CAGCTG 1 cut(s) 90
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 294, 308
SatI GCNGC 2 cut(s) 91, 94
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 282
SetI ASST 3 cut(s) 92, 129, 323
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 2 cut(s) 113, 171
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 56
TasI AATT 2 cut(s) 113, 171
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 294, 308
Tru9I TTAA 2 cut(s) 294, 308
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 90, 93
TspDTI ATGAA 2 cut(s) 9, 183
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 130
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 2 cut(s) 113, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.