Prupe.7G113800_v2.0.a1

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013992
Physical Location & Seq
Forward (+)
13947417 .. 13948637
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G113800.1

Sequence Viewer

Length: 327 bp
ATGGTGTGTGTTGTGTGTTCACCGGCCGCAGTGGCAGAGAGGATTTCTTGGTATTGTGCTTTGTTCTTGGGGGTGATGCTGGTTCTGAGCTGCTTCGAATCGTTATCGAGCGAAAACGAGTACAGGGTGAGGACGATCCAACTTCAAGTTGATCGTTTGAACATGCCGTGTGATGAAATTTATGTGGTTCATGAAGGAGAGACACTGCAAACAATCAGTGAAAAATGTGGTGACCCTTACATTGTTGAAGAGAATCCACATATTCATGACCCTGATGATGTTTTCCCTGGCTTGGTCATTAAGATCACTCCATTCAAACTAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

4.65

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52790
fragaria_vesca FvH4_6g18311
malus_domestica MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis pycom14g01940
rosa_chinensis RchiOBHm_Chr3g0472771
rosa_laevigata RLG00000024054
rosa_roxburghii Rroxscaffold_6G00408580
rosa_rugosa Rorug03G0127900
rosa_samantha Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana Rw3G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 4 cut(s) 146, 160, 248, 316
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 130
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 177
AsuHPI GGTGA 4 cut(s) 12, 85, 139, 242
AsuII TTCGAA 1 cut(s) 96
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 194
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 2 cut(s) 27, 91
BlsI GCNGC 2 cut(s) 28, 92
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 1 cut(s) 22
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 96
Bsp143I GATC 3 cut(s) 135, 151, 303
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 78
BspHI TCATGA 2 cut(s) 190, 265
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 3 cut(s) 135, 151, 303
Bst2UI CCWGG 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 86, 320
BstEII GGTNACC 1 cut(s) 230
BstKTI GATC 3 cut(s) 138, 154, 306
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 135, 151, 303
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 77
BstZI CGGCCG 1 cut(s) 24
BsuRI GGCC 1 cut(s) 26
BtsI GCAGTG 2 cut(s) 36, 203
BtsIMutI CAGTG 3 cut(s) 36, 203, 223
CciI TCATGA 2 cut(s) 190, 265
Cfr10I RCCGGY 1 cut(s) 22
Csp6I GTAC 1 cut(s) 121
CviAII CATG 3 cut(s) 163, 191, 266
CviJI RGCY 3 cut(s) 26, 90, 291
CviKI_1 RGCY 3 cut(s) 26, 90, 291
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 86, 320
DpnI GATC 3 cut(s) 137, 153, 305
DpnII GATC 3 cut(s) 135, 151, 303
EaeI YGGCCR 1 cut(s) 24
EagI CGGCCG 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EclXI CGGCCG 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 24
Eco91I GGTNACC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 3 cut(s) 166, 194, 269
FaiI YATR 5 cut(s) 164, 183, 192, 261, 267
FatI CATG 3 cut(s) 162, 190, 265
Fnu4HI GCNGC 2 cut(s) 27, 91
Fsp4HI GCNGC 2 cut(s) 27, 91
GluI GCNGC 2 cut(s) 27, 91
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 23
Hin1II CATG 3 cut(s) 166, 194, 269
HinfI GANTC 2 cut(s) 98, 253
HpaII CCGG 1 cut(s) 23
HphI GGTGA 4 cut(s) 12, 85, 139, 242
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 191, 266
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 86, 320
Hsp92II CATG 3 cut(s) 166, 194, 269
Kzo9I GATC 3 cut(s) 135, 151, 303
LpnPI CCDG 6 cut(s) 36, 65, 109, 273, 285, 300
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 137, 153, 305
MboI GATC 3 cut(s) 135, 151, 303
MboII GAAGA 1 cut(s) 260
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 2 cut(s) 33, 123
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 3 cut(s) 135, 151, 303
NlaIII CATG 3 cut(s) 166, 194, 269
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 166
NspV TTCGAA 1 cut(s) 96
PagI TCATGA 2 cut(s) 190, 265
PfeI GAWTC 2 cut(s) 98, 253
PkrI GCNGC 2 cut(s) 28, 92
Psp6I CCWGG 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 230
PspGI CCWGG 1 cut(s) 286
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 27, 91
Sau3AI GATC 3 cut(s) 135, 151, 303
ScrFI CCNGG 1 cut(s) 288
SetI ASST 2 cut(s) 92, 326
SfaNI GCATC 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 286
TaqI TCGA 2 cut(s) 96, 107
TasI AATT 1 cut(s) 177
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 98, 253
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 3 cut(s) 36, 210, 223
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 4 cut(s) 179, 189, 207, 254
TspRI CASTG 3 cut(s) 36, 210, 223
XapI RAATTY 1 cut(s) 177
XceI RCATGY 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.