RLG00000024054

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013992
Physical Location & Seq
Forward (+)
31277128 .. 31277436
309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024054

Sequence Viewer

Length: 309 bp
ATGGTGTCTGCTTCCACAACTGCAATGGCTGAGAAGATTTCTTGGTATTGTGCTCTGTTCTTGGCCGTGATGCTGGTTTTAAGCTGCTGTCAATCAAGCGAAAGCGAATTCAATTCGAGAATGCTACAAGTCCAAAGGAGTCGTTTGAACAAGCCATGTGATGAAATTTACGTGGTTCATGAAGGCGAGACACTGCAAACGATTAGTGAAAAATGTGAAGATCCTTACATTGTTGAAGAGAATCCACACATTCATGACCCTGATGATGTTTTCCCTGGCTTGGTCATTAAGATTACTCCATACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

103

Amino Acids

11.6

Weight (kDa)

4.76

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52790
fragaria_vesca FvH4_6g18311
malus_domestica MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis pycom14g01940
rosa_chinensis RchiOBHm_Chr3g0472771
rosa_laevigata RLG00000024054
rosa_roxburghii Rroxscaffold_6G00408580
rosa_rugosa Rorug03G0127900
rosa_samantha Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana Rw3G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 2 cut(s) 107, 165
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 3 cut(s) 112, 148, 236
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 107, 165
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 182
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 2 cut(s) 178, 253
BspPI GGATC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 191
CciI TCATGA 2 cut(s) 178, 253
CviAII CATG 3 cut(s) 156, 179, 254
CviJI RGCY 5 cut(s) 29, 65, 84, 154, 279
CviKI_1 RGCY 5 cut(s) 29, 65, 84, 154, 279
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 159, 182, 257
FaiI YATR 4 cut(s) 157, 180, 255, 301
FatI CATG 3 cut(s) 155, 178, 253
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 3 cut(s) 159, 182, 257
HinfI GANTC 2 cut(s) 139, 241
Hpy188III TCNNGA 3 cut(s) 117, 179, 254
HpyAV CCTTC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 23, 196
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 3 cut(s) 159, 182, 257
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 4 cut(s) 59, 261, 273, 288
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 171
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 46, 230, 248
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 107, 112, 165
MlyI GAGTC 1 cut(s) 148
MseI TTAA 2 cut(s) 80, 288
MslI CAYNNNNRTG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 1 cut(s) 276
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 159, 182, 257
PagI TCATGA 2 cut(s) 178, 253
PctI GAATGC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 2 cut(s) 80, 288
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 55
SetI ASST 2 cut(s) 86, 174
SfaNI GCATC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 3 cut(s) 107, 112, 165
StyD4I CCNGG 1 cut(s) 274
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 116
TasI AATT 3 cut(s) 107, 112, 165
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 2 cut(s) 80, 288
Tru9I TTAA 2 cut(s) 80, 288
TscAI CASTG 1 cut(s) 198
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 4 cut(s) 167, 177, 195, 242
TspRI CASTG 1 cut(s) 198
XapI RAATTY 2 cut(s) 107, 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.