Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013992

Physical Location & Seq

Genomic Coordinates Reverse (-)

1502158 .. 1502655

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTACCAACACGTCCACGTACCACAATCACTGATCCTAAGAAAAAACAACATGGTGTGTGTTATGTGTTCATCAAGTACTGTAATATTGGCAGAGAAGATTGCTTGTTATTGTGCCTTGCTCTTGGCACTCGTTCTGGTTCTAAGCTGCTGTGAATCAAGCGAAAGCGAATTCACGGCGAGGAAGGTCCAACTCCAAATGGATGCATTGAACAAGCCGTGCGATGAAATTTATGTGGTTCGTGAAGGAGAGACTCTGCAAACAATTATTGAAAAATGTGGAGACCCCTACATTGTTGAAGAGAATCCACATATCCATGACCCTGATGATGTTTTCCCTGGCTTGCTCATTAGGATTACTCCACCAATCGAAGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

127

Amino Acids

14.22

Weight (kDa)

4.85

Isoelectric Point (pI)

64.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52790
fragaria_vesca	FvH4_6g18311
malus_domestica	MD14G1019700.v1.1 MD14G1019800.v1.1
prunus_persica	Prupe.7G113800_v2.0.a1 Prupe.7G113900_v2.0.a1
pyrus_communis	pycom14g01940
rosa_chinensis	RchiOBHm_Chr3g0472771
rosa_laevigata	RLG00000024054
rosa_roxburghii	Rroxscaffold_6G00408580
rosa_rugosa	Rorug03G0127900
rosa_samantha	Rh3AG180400 Rh3BG206600 Rh3CG203700 Rh3CG222000 Rh3DG169300
rosa_wichuraiana	Rw3G016250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	170, 228
AfaI	GTAC	3 cut(s)	5, 21, 79
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	211, 272, 299
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	245, 276
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	170, 228
AspS9I	GGNCC	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	192, 202
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	245, 276
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	245, 276
Bso31I	GGTCTC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	38, 143
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	245, 276
BstMBI	GATC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	134
BtgZI	GCGATG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	4, 20, 78
CviAII	CATG	2 cut(s)	52, 317
CviJI	RGCY	3 cut(s)	147, 217, 342
CviKI_1	RGCY	3 cut(s)	147, 217, 342
CviQI	GTAC	3 cut(s)	4, 20, 78
DdeI	CTNAG	2 cut(s)	38, 143
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	208
FaeI	CATG	2 cut(s)	55, 320
FaiI	YATR	5 cut(s)	53, 65, 234, 312, 318
FatI	CATG	2 cut(s)	51, 316
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	55, 320
HinfI	GANTC	3 cut(s)	155, 253, 304
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	178, 239
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	12, 18
HpyCH4V	TGCA	2 cut(s)	206, 259
HpyF3I	CTNAG	2 cut(s)	38, 143
HpySE526I	ACGT	2 cut(s)	12, 18
Hsp92II	CATG	2 cut(s)	55, 320
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	122, 324, 336, 351
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	193
MaeII	ACGT	2 cut(s)	12, 18
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	2 cut(s)	109, 311
MluCI	AATT	3 cut(s)	170, 228, 264
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	208
MslI	CAYNNNNRTG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	2 cut(s)	55, 320
NsiI	ATGCAT	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	155, 304
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	187
RsaI	GTAC	3 cut(s)	5, 21, 79
RsaNI	GTAC	3 cut(s)	4, 20, 78
RseI	CAYNNNNRTG	1 cut(s)	315
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	5 cut(s)	15, 21, 149, 189, 380
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	170, 228, 264
SspI	AATATT	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	15, 21
TaqI	TCGA	1 cut(s)	369
TasI	AATT	3 cut(s)	170, 228, 264
TatI	WGTACW	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	155, 304
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	60, 240
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	170, 228
ZrmI	AGTACT	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.