Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013436

Physical Location & Seq

Genomic Coordinates Forward (+)

19721937 .. 19722846

Gene Structure 910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGAAAGCAAGAATCAGAGGGAGCGAATCTTGAATTCGAATCCAAATCAAATGACAATGGAAATGTGAAAATCGCACCAAACGACCAAAGTTTCCTCACAATTCTTGACGACATAAAGTCTTCCAAATCTCCGGCTGTTATTAACTATGGAGCTTCTTGGTGTGGAGTTTGTAGCCAGATTCTTCCTGCATTCCGAAAGCTCAGCAACAGTTTCTCGAAGCTCAAGTTTGTTTATGCAGATATCGACGAGTGCCCTGAAACCACTCGTCACATCCGTTACACACCCACGTTTCAGTTTTACAGAGACGGCGAGAAAGTCGATGAGATGTTTGGAGCTGGTGAACAGAGGCTCCATGATCGTCTTTGGCTTCACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

126

Amino Acids

14.41

Weight (kDa)

5.9

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	38 - 117	2.1e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53220
fragaria_vesca	FvH4_6g16520 FvH4_6g16520
malus_domestica	MD04G1091800.v1.1 MD12G1109800.v1.1
prunus_persica	Prupe.7G128400_v2.0.a1
pyrus_communis	pycom12g11070
rosa_chinensis	RchiOBHm_Chr3g0470431
rosa_laevigata	RLG00000024268
rosa_multiflora	Rmu_sc0002383.1_g000008 Rmu_sc0036044.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410820
rosa_rugosa	Rorug03G0108800
rosa_samantha	Rh3AG159200 Rh3BG183700 Rh3CG174200 Rh3DG191100
rosa_wichuraiana	Rw3G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	35
AhdI	GACNNNNNGTC	1 cut(s)	118
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	4 cut(s)	155, 202, 223, 338
AluI	AGCT	4 cut(s)	155, 202, 223, 338
Alw26I	GTCTC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	353
AsuII	TTCGAA	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	300
BlpI	GCTNAGC	1 cut(s)	203
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
BseGI	GGATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	358
Bsp1720I	GCTNAGC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	39
BssMI	GATC	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	273
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	8 cut(s)	137, 155, 177, 202, 223, 338, 352, 370
CviKI_1	RGCY	8 cut(s)	137, 155, 177, 202, 223, 338, 352, 370
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1105I	GACNNNNNGTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	359
FaiI	YATR	4 cut(s)	116, 150, 237, 357
FatI	CATG	1 cut(s)	355
FokI	GGATG	1 cut(s)	260
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	1 cut(s)	359
HinfI	GANTC	4 cut(s)	14, 28, 41, 181
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	2 cut(s)	19, 197
Hpy188III	TCNNGA	4 cut(s)	32, 107, 217, 378
Hpy8I	GTNNAC	1 cut(s)	344
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	2 cut(s)	191, 239
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	4 cut(s)	23, 152, 335, 357
LpnPI	CCDG	5 cut(s)	147, 191, 201, 270, 324
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	2 cut(s)	269, 278
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	114, 176
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	35, 102
MnlI	CCTC	3 cut(s)	13, 107, 342
MseI	TTAA	1 cut(s)	144
MspI	CCGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	191
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 274
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	4 cut(s)	14, 28, 41, 181
PspN4I	GGNNCC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	5 cut(s)	157, 204, 225, 293, 340
SfuI	TTCGAA	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	35, 102
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	4 cut(s)	39, 218, 246, 321
TasI	AATT	2 cut(s)	35, 102
TfiI	GAWTC	4 cut(s)	14, 28, 41, 181
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	266
XapI	RAATTY	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.