Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013436

Physical Location & Seq

Genomic Coordinates Forward (+)

13172231 .. 13172851

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGGGAGGAGTCGGCGGCGGAGGCGACGGAGCCACCGGCAGCAAGAAGGGATTAGAAGGCACGGGCTTGGATTTACCAGAGAATCGCCATGGTAACCTAAAGAGTGCTTCCAGCGACCAAAACCTCAAAGACATCCTTGTTCAAATCAAGTCCTGCAAATCCCCTGCAGTCATCAATTATGGTGCATCTTGGTGCCGTGTGTGTAGCCAGATCCTTCCTGCATTCTGCCAGCTGAGTAACAGTTTCCCAAAGCTCTCTTTCGTCTATGCAGACATTGATGAATGCCCCGAAACAACACAGCACATCCGCTACACGCCCACCTTCCATTTCTACCGGGATGGCGAAAGGGTTGATGAGATGTTTGGTGCTGGAGAAGAGCGGTTGCATGATCGCTTGTGGTTACATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

138

Amino Acids

15.01

Weight (kDa)

5.91

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53220
fragaria_vesca	FvH4_6g16520 FvH4_6g16520
malus_domestica	MD04G1091800.v1.1 MD12G1109800.v1.1
prunus_persica	Prupe.7G128400_v2.0.a1
pyrus_communis	pycom12g11070
rosa_chinensis	RchiOBHm_Chr3g0470431
rosa_laevigata	RLG00000024268
rosa_multiflora	Rmu_sc0002383.1_g000008 Rmu_sc0036044.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410820
rosa_rugosa	Rorug03G0108800
rosa_samantha	Rh3AG159200 Rh3BG183700 Rh3CG174200 Rh3DG191100
rosa_wichuraiana	Rw3G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	382
AciI	CCGC	5 cut(s)	5, 18, 21, 310, 382
AclWI	GGATC	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	2 cut(s)	235, 256
AluI	AGCT	2 cut(s)	235, 256
AlwI	GGATC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	19, 43
BlsI	GCNGC	2 cut(s)	20, 44
Bme1390I	CCNGG	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	34, 197
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	3 cut(s)	135, 306, 346
BseMII	CTCAG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	39, 337
BsmI	GAATGC	2 cut(s)	224, 290
Bsp143I	GATC	2 cut(s)	213, 391
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	5 cut(s)	5, 18, 21, 310, 382
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	34, 197
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	213, 391
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	91
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	3 cut(s)	135, 306, 346
BstKTI	GATC	2 cut(s)	216, 394
BstMBI	GATC	2 cut(s)	213, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	135, 306, 346
Cac8I	GCNNGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	38
CviAII	CATG	2 cut(s)	92, 389
CviJI	RGCY	5 cut(s)	35, 69, 210, 235, 256
CviKI_1	RGCY	5 cut(s)	35, 69, 210, 235, 256
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	215, 393
DpnII	GATC	2 cut(s)	213, 391
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	91
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	95, 392
FaiI	YATR	4 cut(s)	93, 183, 270, 390
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	2 cut(s)	91, 388
Fnu4HI	GCNGC	2 cut(s)	19, 43
FokI	GGATG	3 cut(s)	122, 293, 353
Fsp4HI	GCNGC	2 cut(s)	19, 43
GluI	GCNGC	2 cut(s)	19, 43
GsuI	CTGGAG	1 cut(s)	393
HapII	CCGG	2 cut(s)	39, 337
Hin1II	CATG	2 cut(s)	95, 392
HinfI	GANTC	2 cut(s)	12, 85
HpaII	CCGG	2 cut(s)	39, 337
Hpy188III	TCNNGA	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	43, 53, 227, 334
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	6 cut(s)	159, 170, 188, 224, 272, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	95, 392
Kzo9I	GATC	2 cut(s)	213, 391
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	95, 239, 402
MalI	GATC	2 cut(s)	215, 393
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	2 cut(s)	213, 391
MboII	GAAGA	1 cut(s)	389
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	2 cut(s)	17, 137
MslI	CAYNNNNRTG	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	2 cut(s)	39, 337
MspR9I	CCNGG	1 cut(s)	338
Mva1269I	GAATGC	2 cut(s)	224, 290
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	213, 391
NlaIII	CATG	2 cut(s)	95, 392
NlaIV	GGNNCC	2 cut(s)	34, 197
PciSI	GCTCTTC	1 cut(s)	372
PctI	GAATGC	2 cut(s)	224, 290
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	20, 44
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	34, 197
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	372
SatI	GCNGC	2 cut(s)	19, 43
Sau3AI	GATC	2 cut(s)	213, 391
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	5 cut(s)	102, 129, 237, 258, 326
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	5 cut(s)	5, 18, 21, 310, 382
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	245
TasI	AATT	1 cut(s)	178
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.