Rh3DG191100

Thioredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013436
Physical Location & Seq
Forward (+)
17023362 .. 17027042
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG191100.1

Sequence Viewer

Length: 411 bp
ATGGAGGGAGGAACTGGGTCGACCGGCGACGACGCCAACACCAACAACGGCTTAGACGGCACAACCTTCAATTTGCCGGCGAATCGCCATGGGAACCTAAAGACTGCCTCTAGTGATCAAAGCCTCAGCGACATTCTTCTTCAAATCAAGTCCTCCAAAACCCCTGCAGTTATCAATTACGGCGCAACCTGGTGTCGAGTGTGCAGCCAGATTCTTCCTGCATTCTGCAAGCTGAGTAATAGTTTCCCAAAGCTGTCGTTCGTCTATGCAGATATTGATGAATGCCCTGAAACAACTCAGCACATTCGGTATACGCCGACGTTCCATTTCTACAGAGATGGTGAGAGGGTGGATGAGATGTTTGGTGCCGGCGAAGAGCGGCTTCATGATCGCTTGTGGTTGCACTCTTGA

Protein Analysis

136

Amino Acids

15.12

Weight (kDa)

5.42

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 48 - 129 7.1e-14 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013436)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53220
fragaria_vesca FvH4_6g16520 FvH4_6g16520
malus_domestica MD04G1091800.v1.1 MD12G1109800.v1.1
prunus_persica Prupe.7G128400_v2.0.a1
pyrus_communis pycom12g11070
rosa_chinensis RchiOBHm_Chr3g0470431
rosa_laevigata RLG00000024268
rosa_multiflora Rmu_sc0002383.1_g000008 Rmu_sc0036044.1_g000001
rosa_roxburghii Rroxscaffold_6G00410820
rosa_rugosa Rorug03G0108800
rosa_samantha Rh3AG159200 Rh3BG183700 Rh3CG174200 Rh3DG191100
rosa_wichuraiana Rw3G015080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 379
AccI GTMKAC 2 cut(s) 20, 311
AciI CCGC 1 cut(s) 379
AcyI GRCGYC 1 cut(s) 33
AgsI TTSAA 2 cut(s) 70, 143
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 2 cut(s) 232, 253
AluI AGCT 2 cut(s) 232, 253
ApeKI GCWGC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 365
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 332
BceAI ACGGC 3 cut(s) 64, 73, 196
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 2 cut(s) 165, 331
BisI GCNGC 2 cut(s) 205, 380
BlsI GCNGC 2 cut(s) 206, 381
Bme1390I CCNGG 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 95, 367
BmrFI CCNGG 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 88
Bse118I RCCGGY 3 cut(s) 23, 76, 368
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 358
BseMII CTCAG 3 cut(s) 139, 224, 311
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 24
BsiSI CCGG 3 cut(s) 24, 77, 369
BsmI GAATGC 2 cut(s) 221, 287
Bsp143I GATC 2 cut(s) 115, 388
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 1 cut(s) 379
BspCNI CTCAG 3 cut(s) 138, 225, 310
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 95, 367
BspMAI CTGCAG 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 3 cut(s) 23, 76, 368
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 3 cut(s) 23, 76, 368
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 115, 388
BssNAI GTATAC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 78, 230, 370
BstDEI CTNAG 4 cut(s) 52, 125, 233, 297
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 358
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 118, 391
BstMBI GATC 2 cut(s) 115, 388
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 2 cut(s) 165, 331
BstV1I GCAGC 1 cut(s) 216
BstZ17I GTATAC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 78, 230, 370
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 3 cut(s) 23, 76, 368
CseI GACGC 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 188
CviAII CATG 2 cut(s) 89, 386
CviJI RGCY 6 cut(s) 51, 123, 207, 232, 253, 382
CviKI_1 RGCY 6 cut(s) 51, 123, 207, 232, 253, 382
DdeI CTNAG 4 cut(s) 52, 125, 233, 297
DpnI GATC 2 cut(s) 117, 390
DpnII GATC 2 cut(s) 115, 388
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 2 cut(s) 92, 389
FaiI YATR 4 cut(s) 90, 267, 312, 387
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 2 cut(s) 88, 385
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 2 cut(s) 20, 311
Fnu4HI GCNGC 2 cut(s) 205, 380
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 205, 380
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 205, 380
HapII CCGG 3 cut(s) 24, 77, 369
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 2 cut(s) 92, 389
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 82, 211
HpaII CCGG 3 cut(s) 24, 77, 369
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 21, 312
Hpy188III TCNNGA 2 cut(s) 386, 408
Hpy8I GTNNAC 2 cut(s) 21, 312
Hpy99I CGWCG 3 cut(s) 32, 35, 322
HpyAV CCTTC 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 6 cut(s) 167, 204, 221, 228, 269, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 4 cut(s) 52, 125, 233, 297
HpySE526I ACGT 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 92, 389
HspAI GCGC 1 cut(s) 183
KroI GCCGGC 2 cut(s) 76, 368
KroNI GCCGGC 2 cut(s) 78, 370
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 115, 388
LguI GCTCTTC 1 cut(s) 369
LpnPI CCDG 9 cut(s) 37, 90, 175, 177, 202, 221, 231, 300, 382
Lsp1109I GCAGC 1 cut(s) 216
MabI ACCWGGT 1 cut(s) 188
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 320
MalI GATC 2 cut(s) 117, 390
MbiI CCGCTC 1 cut(s) 379
MboI GATC 2 cut(s) 115, 388
MboII GAAGA 4 cut(s) 128, 131, 206, 386
MluCI AATT 2 cut(s) 70, 175
MnlI CCTC 4 cut(s) 118, 134, 163, 339
MroNI GCCGGC 2 cut(s) 76, 368
MspI CCGG 3 cut(s) 24, 77, 369
MspR9I CCNGG 1 cut(s) 190
Mva1269I GAATGC 2 cut(s) 221, 287
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 57
NaeI GCCGGC 2 cut(s) 78, 370
NcoI CCATGG 1 cut(s) 88
NdeII GATC 2 cut(s) 115, 388
NgoMIV GCCGGC 2 cut(s) 76, 368
NlaIII CATG 2 cut(s) 92, 389
NlaIV GGNNCC 2 cut(s) 95, 367
PagI TCATGA 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 2 cut(s) 221, 287
PdiI GCCGGC 2 cut(s) 78, 370
PfeI GAWTC 2 cut(s) 82, 211
PkrI GCNGC 2 cut(s) 206, 381
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 95, 367
PstI CTGCAG 1 cut(s) 169
SalI GTCGAC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 369
SatI GCNGC 2 cut(s) 205, 380
Sau3AI GATC 2 cut(s) 115, 388
ScrFI CCNGG 1 cut(s) 190
SetI ASST 6 cut(s) 68, 99, 191, 234, 255, 323
SexAI ACCWGGT 1 cut(s) 188
SfcI CTRYAG 2 cut(s) 165, 331
Sse9I AATT 2 cut(s) 70, 175
SsiI CCGC 1 cut(s) 379
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 20, 196
TasI AATT 2 cut(s) 70, 175
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 2 cut(s) 82, 211
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 294, 374
XmiI GTMKAC 2 cut(s) 20, 311
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.