Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013436

Physical Location & Seq

Genomic Coordinates Forward (+)

17400795 .. 17402031

Gene Structure 1237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1109800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGGGAGGAGTCGGCGGAGGAGGCGACGGAGCCACCAGTAGCAAGAAGGGATTAGAAGGCACGGGCTTGGATTTACCAGAGAATCGCCATGGCAACCTAAAGAGTGCTTCCAGCGACCAAAACCTTAAAGACCTCCTTGTTCAAATCAAGTCCTGCAAATCCCCTGCAGTCATCAATTATGGTGCATCTTGGTGCCGTGTGTGTAGCCAGATCCTTCCTGCATTCTGCCAGCTGAGTAACAGTTTCCCAAAGCTCTCTTTCGTCTATGCAGACATTGATGAATGCCCCGAAACAACACAGCACATTCGCTACACGCCCACCTTCCATTTCTACCGGGATGGCGAAAGGGTTGATGAGATGTTTGGTGCTGGAGAAGAGCGGTTGCACGATCGCTTGTGGTTACATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0044424 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

138

Amino Acids

15.04

Weight (kDa)

5.91

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	49 - 130	5.3e-13	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013436)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53220
fragaria_vesca	FvH4_6g16520 FvH4_6g16520
malus_domestica	MD04G1091800.v1.1 MD12G1109800.v1.1
prunus_persica	Prupe.7G128400_v2.0.a1
pyrus_communis	pycom12g11070
rosa_chinensis	RchiOBHm_Chr3g0470431
rosa_laevigata	RLG00000024268
rosa_multiflora	Rmu_sc0002383.1_g000008 Rmu_sc0036044.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410820
rosa_rugosa	Rorug03G0108800
rosa_samantha	Rh3AG159200 Rh3BG183700 Rh3CG174200 Rh3DG191100
rosa_wichuraiana	Rw3G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	382
AciI	CCGC	3 cut(s)	5, 18, 382
AclWI	GGATC	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	2 cut(s)	235, 256
AluI	AGCT	2 cut(s)	235, 256
AlwI	GGATC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	195
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	34, 197
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	24, 36
Bsh1285I	CGRYCG	1 cut(s)	394
BshNI	GGYRCC	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	337
BsmI	GAATGC	2 cut(s)	224, 290
Bsp143I	GATC	2 cut(s)	213, 391
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	3 cut(s)	5, 18, 382
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	34, 197
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	213, 391
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	216, 394
BstMBI	GATC	2 cut(s)	213, 391
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	233
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	5 cut(s)	35, 69, 210, 235, 256
CviKI_1	RGCY	5 cut(s)	35, 69, 210, 235, 256
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	215, 393
DpnII	GATC	2 cut(s)	213, 391
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	95
FaiI	YATR	3 cut(s)	93, 183, 270
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	91
FokI	GGATG	1 cut(s)	353
GsuI	CTGGAG	1 cut(s)	393
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	1 cut(s)	95
HinfI	GANTC	2 cut(s)	12, 85
HpaII	CCGG	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	43, 53, 227, 334
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	6 cut(s)	159, 170, 188, 224, 272, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	213, 391
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	32
LweI	GCATC	1 cut(s)	197
MaeIII	GTNAC	2 cut(s)	239, 402
MalI	GATC	2 cut(s)	215, 393
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	2 cut(s)	213, 391
MboII	GAAGA	1 cut(s)	389
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	3 cut(s)	14, 17, 146
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	338
Mva1269I	GAATGC	2 cut(s)	224, 290
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	213, 391
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	34, 197
PciSI	GCTCTTC	1 cut(s)	372
PctI	GAATGC	2 cut(s)	224, 290
PfeI	GAWTC	1 cut(s)	85
Ple19I	CGATCG	1 cut(s)	394
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	34, 197
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	213
PvuI	CGATCG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	213, 391
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	6 cut(s)	102, 129, 138, 237, 258, 326
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	5, 18, 382
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	245
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.