Rmu_sc0036044.1_g000001

Thioredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036044.1
OG0013436
Physical Location & Seq
Forward (+)
1 .. 398
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036044.1_g000001.1.cds

Sequence Viewer

Length: 266 bp
ctcttttgaaatcctcgcaggcagtcatcaattacggcgcaacctggtgtcgagtgtgcagccagattcttcctgcattctgcaagctgagtaatagtttcccaaagctgtcgttcgtctatgcagatattgatgaatgccctgaaacaactcagcacattcggtatacgccgacgttccatttttacagagatggtgagagggtggatgagatgtttggtgccggcgaagagcggcttcatgatcgcttgtggttgcactcttga

Protein Analysis

87

Amino Acids

10.14

Weight (kDa)

6.05

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013436)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53220
fragaria_vesca FvH4_6g16520 FvH4_6g16520
malus_domestica MD04G1091800.v1.1 MD12G1109800.v1.1
prunus_persica Prupe.7G128400_v2.0.a1
pyrus_communis pycom12g11070
rosa_chinensis RchiOBHm_Chr3g0470431
rosa_laevigata RLG00000024268
rosa_multiflora Rmu_sc0002383.1_g000008 Rmu_sc0036044.1_g000001
rosa_roxburghii Rroxscaffold_6G00410820
rosa_rugosa Rorug03G0108800
rosa_samantha Rh3AG159200 Rh3BG183700 Rh3CG174200 Rh3DG191100
rosa_wichuraiana Rw3G015080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccBSI CCGCTC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 166
AciI CCGC 1 cut(s) 234
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 2 cut(s) 87, 108
AluI AGCT 2 cut(s) 87, 108
ApeKI GCWGC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 208
BanI GGYRCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 45
BisI GCNGC 2 cut(s) 60, 235
BlsI GCNGC 2 cut(s) 61, 236
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 223
BseBI CCWGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 79, 166
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 224
BsmI GAATGC 2 cut(s) 76, 142
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 80, 165
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 1 cut(s) 243
BssNAI GTATAC 1 cut(s) 167
Bst1107I GTATAC 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 20, 85, 225
BstDEI CTNAG 2 cut(s) 88, 152
BstF5I GGATG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 71
BstZ17I GTATAC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 20, 85, 225
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 43
CviAII CATG 1 cut(s) 241
CviJI RGCY 4 cut(s) 62, 87, 108, 237
CviKI_1 RGCY 4 cut(s) 62, 87, 108, 237
DdeI CTNAG 2 cut(s) 88, 152
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 122, 167, 242
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 1 cut(s) 240
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 60, 235
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 2 cut(s) 60, 235
GlaI GCGC 1 cut(s) 39
GluI GCNGC 2 cut(s) 60, 235
HapII CCGG 1 cut(s) 224
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 241, 263
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 5 cut(s) 59, 76, 83, 124, 258
HpyF3I CTNAG 2 cut(s) 88, 152
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 38
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 243
LguI GCTCTTC 1 cut(s) 224
LpnPI CCDG 7 cut(s) 4, 30, 57, 76, 86, 155, 237
Lsp1109I GCAGC 1 cut(s) 71
MabI ACCWGGT 1 cut(s) 43
MaeII ACGT 1 cut(s) 175
MalI GATC 1 cut(s) 245
MbiI CCGCTC 1 cut(s) 234
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 61, 241
MluCI AATT 1 cut(s) 30
MnlI CCTC 2 cut(s) 24, 194
MroNI GCCGGC 1 cut(s) 223
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 2 cut(s) 76, 142
MvaI CCWGG 1 cut(s) 45
NaeI GCCGGC 1 cut(s) 225
NdeII GATC 1 cut(s) 243
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 222
PagI TCATGA 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 224
PctI GAATGC 2 cut(s) 76, 142
PdiI GCCGGC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 61, 236
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 224
SatI GCNGC 2 cut(s) 60, 235
Sau3AI GATC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 45
SetI ASST 4 cut(s) 46, 89, 110, 178
SexAI ACCWGGT 1 cut(s) 43
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 43
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 30
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 66
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 149, 229
XmiI GTMKAC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.