Rorug03G0108800

Thioredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013436
Physical Location & Seq
Forward (+)
8762814 .. 8765056
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0108800.1

Sequence Viewer

Length: 798 bp
ATGGCAATGTCTGTGAGGAGTGTTTCGAGTCTTTTGGTCTCGAGCAAGCAAGGGGATGGTGGTGCTGATTTTAGCAGCAGCAGCAGCAGCCTCTTGTTGAAGGGCTCAAAACTTGGATCTTCTTCCTCTTCTGGTCTGAGTTTTAATCAGCAGAGAAAACCCAGAAACCTTGTGGTTTCTGCGTTGAACGAGTCGGTGCTGACTGGTGTTGTGTTCCAACCATTTGAAGAGGTCAAGAAGGAGGTTCTTGCTGTTCCTGTGGCACGTCATGTTTCGCTTGCTCGTCAGTGTTTTGCAGATGAGTGTGAAGCTGCGATAAACGAGCAGATCAATGTGGAATACAATGTGTCGTATGTGTACCATTCCATGTTTTCATATTTTGACAGGGACGACGTTGCTCTTAGGGGCATGGCCAAGTTTTACAAGGAATCAAGTGAGGAAGAAAGAGAGCATGCTGAAAAACTGATGAAATATCAGAATATACGTGGTGGAAGAGTAAAGCTACACTCTATTATAAATCCCCCTTCAGAATTTGAGCATGTTGAGAAGGGAGATGCATTGTATGCTATGGAGTTAGCTTTGTCTTTGGAGAAGCTGACAAATGAAAAGCTCTTGAGTTTGCATAGGGTGGCAGAGGAGAACAATGATGCTCAAATGACAGAGTTTGTCGAGAGGGAGTTTCTTAGTGAGCAGGTTGAAGCCATTAAGAAGATAGCTGAGTATGTCACCCAGTTGAGGATGGTTGGAAAAGGACATGGAGTGTGGCACTTTGATCAACAGCTCCTTCATGAAGAGTAG

Protein Analysis

265

Amino Acids

29.83

Weight (kDa)

5.57

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 104 - 247 8.7e-32 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0013436)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53220
fragaria_vesca FvH4_6g16520 FvH4_6g16520
malus_domestica MD04G1091800.v1.1 MD12G1109800.v1.1
prunus_persica Prupe.7G128400_v2.0.a1
pyrus_communis pycom12g11070
rosa_chinensis RchiOBHm_Chr3g0470431
rosa_laevigata RLG00000024268
rosa_multiflora Rmu_sc0002383.1_g000008 Rmu_sc0036044.1_g000001
rosa_roxburghii Rroxscaffold_6G00410820
rosa_rugosa Rorug03G0108800
rosa_samantha Rh3AG159200 Rh3BG183700 Rh3CG174200 Rh3DG191100
rosa_wichuraiana Rw3G015080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 682
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 735
AgsI TTSAA 4 cut(s) 100, 187, 227, 698
AjiI CACGTC 1 cut(s) 266
AluBI AGCT 7 cut(s) 311, 502, 578, 595, 610, 716, 781
AluI AGCT 7 cut(s) 311, 502, 578, 595, 610, 716, 781
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 6 cut(s) 75, 78, 81, 84, 87, 311
ApoI RAATTY 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 718
AvaI CYCGRG 1 cut(s) 40
BalI TGGCCA 1 cut(s) 413
BanII GRGCYC 1 cut(s) 107
BbvI GCAGC 6 cut(s) 87, 90, 93, 96, 99, 298
BccI CCATC 2 cut(s) 50, 733
BclI TGATCA 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 6 cut(s) 76, 79, 82, 85, 88, 312
BlsI GCNGC 6 cut(s) 77, 80, 83, 86, 89, 313
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 266
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 2 cut(s) 544, 637
BmuI ACTGGG 1 cut(s) 724
BpuEI CTTGAG 1 cut(s) 634
BsaAI YACGTR 1 cut(s) 485
BsaI GGTCTC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 735
Bse1I ACTGG 2 cut(s) 208, 730
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 2 cut(s) 61, 744
BseLI CCNNNNNNNGG 1 cut(s) 735
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 128, 708
BseNI ACTGG 2 cut(s) 208, 730
BseRI GAGGAG 2 cut(s) 31, 650
BseXI GCAGC 6 cut(s) 87, 90, 93, 96, 99, 298
BshFI GGCC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 735
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 1 cut(s) 413
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 116, 327, 772
BspANI GGCC 1 cut(s) 413
BspCNI CTCAG 2 cut(s) 129, 709
BspHI TCATGA 1 cut(s) 787
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 208, 730
BssMI GATC 3 cut(s) 116, 327, 772
Bst6I CTCTTC 4 cut(s) 133, 222, 487, 786
BstAPI GCANNNNNTGC 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 485
BstC8I GCNNGC 3 cut(s) 47, 279, 453
BstDEI CTNAG 4 cut(s) 137, 401, 683, 717
BstF5I GGATG 2 cut(s) 61, 744
BstKTI GATC 3 cut(s) 119, 330, 775
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 116, 327, 772
BstMWI GCNNNNNNNGC 4 cut(s) 81, 84, 87, 563
BstNSI RCATGY 2 cut(s) 455, 542
BstV1I GCAGC 6 cut(s) 87, 90, 93, 96, 99, 298
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 1 cut(s) 413
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 61, 744
BtsIMutI CAGTG 1 cut(s) 293
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 3 cut(s) 47, 279, 453
CciI TCATGA 1 cut(s) 787
Csp6I GTAC 1 cut(s) 358
CviAII CATG 7 cut(s) 269, 367, 409, 452, 539, 755, 788
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 4 cut(s) 137, 401, 683, 717
DpnI GATC 3 cut(s) 118, 329, 774
DpnII GATC 3 cut(s) 116, 327, 772
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 4 cut(s) 133, 222, 487, 786
EarI CTCTTC 4 cut(s) 133, 222, 487, 786
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 7 cut(s) 272, 370, 412, 455, 542, 758, 791
FaqI GGGAC 1 cut(s) 401
FatI CATG 7 cut(s) 268, 366, 408, 451, 538, 754, 787
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 6 cut(s) 76, 79, 82, 85, 88, 312
FokI GGATG 2 cut(s) 68, 751
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 6 cut(s) 76, 79, 82, 85, 88, 312
GluI GCNGC 6 cut(s) 76, 79, 82, 85, 88, 312
HaeIII GGCC 1 cut(s) 413
Hin1II CATG 7 cut(s) 272, 370, 412, 455, 542, 758, 791
HinfI GANTC 3 cut(s) 28, 191, 428
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 138, 477, 529
Hpy188III TCNNGA 5 cut(s) 40, 235, 613, 670, 788
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 5 cut(s) 94, 232, 534, 541, 794
HpyCH4IV ACGT 3 cut(s) 265, 393, 484
HpyCH4V TGCA 3 cut(s) 296, 557, 622
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 84, 87, 563
HpyF3I CTNAG 4 cut(s) 137, 401, 683, 717
HpySE526I ACGT 3 cut(s) 265, 393, 484
Hsp92II CATG 7 cut(s) 272, 370, 412, 455, 542, 758, 791
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 3 cut(s) 116, 327, 772
LmnI GCTCC 1 cut(s) 786
LpnPI CCDG 7 cut(s) 117, 175, 189, 270, 370, 677, 743
Lsp1109I GCAGC 6 cut(s) 87, 90, 93, 96, 99, 298
LweI GCATC 2 cut(s) 544, 637
MaeII ACGT 3 cut(s) 265, 393, 484
MaeIII GTNAC 1 cut(s) 724
MalI GATC 3 cut(s) 118, 329, 774
MboI GATC 3 cut(s) 116, 327, 772
MboII GAAGA 7 cut(s) 111, 114, 120, 239, 452, 504, 721
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 1 cut(s) 530
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 2 cut(s) 37, 200
MmeI TCCRAC 2 cut(s) 241, 724
MnlI CCTC 9 cut(s) 9, 101, 136, 223, 235, 430, 628, 666, 729
Mox20I TGGCCA 1 cut(s) 413
Mph1103I ATGCAT 1 cut(s) 559
MscI TGGCCA 1 cut(s) 413
MseI TTAA 2 cut(s) 144, 705
Msp20I TGGCCA 1 cut(s) 413
MwoI GCNNNNNNNGC 4 cut(s) 81, 84, 87, 563
NdeII GATC 3 cut(s) 116, 327, 772
NlaIII CATG 7 cut(s) 272, 370, 412, 455, 542, 758, 791
NmuCI GTSAC 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 2 cut(s) 455, 542
PaeI GCATGC 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 787
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 6 cut(s) 77, 80, 83, 86, 89, 313
PleI GAGTC 2 cut(s) 36, 199
PpsI GAGTC 2 cut(s) 36, 199
Ppu21I YACGTR 1 cut(s) 485
PsiI TTATAA 1 cut(s) 515
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 2 cut(s) 144, 705
SatI GCNGC 6 cut(s) 76, 79, 82, 85, 88, 312
Sau3AI GATC 3 cut(s) 116, 327, 772
SchI GAGTC 2 cut(s) 37, 200
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 2 cut(s) 544, 637
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 40, 613
SmoI CTYRAG 2 cut(s) 40, 613
SphI GCATGC 1 cut(s) 455
Sse9I AATT 1 cut(s) 530
TaiI ACGT 3 cut(s) 268, 396, 487
TaqI TCGA 3 cut(s) 26, 41, 669
TasI AATT 1 cut(s) 530
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 2 cut(s) 144, 705
Tru9I TTAA 2 cut(s) 144, 705
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 6 cut(s) 75, 78, 81, 84, 87, 311
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 4 cut(s) 363, 482, 618, 776
TspRI CASTG 1 cut(s) 293
XapI RAATTY 1 cut(s) 530
XceI RCATGY 2 cut(s) 455, 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XhoI CTCGAG 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.