AT3G53470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015460
Physical Location & Seq
Forward (+)
19822679 .. 19823541
863 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53470.2

Sequence Viewer

Length: 408 bp
ATGGACATTACTGTTCGAATCTCCGGCTTAAAATCCTCCAATCTAATCCGGATAACCCCTAGATTCTCATCTTCCTCTAGATTCCGTTGCTCCAACAACGAACCTCCTCGAAAGGGAAACGAGTCCAACGGTGGTGGTGGTGATAAAGCGTCGACGGACTGGGACAAGGCGTGGAAGAATTTCAAGAAGCAGAGCAAGAAGTCATTGTTCTCGCAATTCAACGTGGACAAGTACGTGACTTGGAATCCTCCCAGATCGGAGTTTGATTTGTCGGAAGAAGTCGATCCTATAAAAAGAACAGAGAGATCCAATCTCATGCTCTGGACAAGTCCAAGGTTCACACTTGTTGGAGCCATCGTCATTGTCTCATTCCTCCTTCTCTACACCATTCTTGCTCCTGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.38

Weight (kDa)

10.0

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53470 AT3G53470
fragaria_vesca FvH4_6g15150 FvH4_6g15150
malus_domestica MD12G1126200.v1.1
prunus_persica Prupe.6G242800_v2.0.a1
pyrus_communis pycom12g12440
rosa_chinensis RchiOBHm_Chr3g0468451
rosa_laevigata RLG00000024428
rosa_multiflora Rmu_sc0040156.1_g000005
rosa_roxburghii Rroxscaffold_6G00412750
rosa_rugosa Rorug03G0095500
rosa_samantha Rh3AG143800 Rh3BG165800 Rh3DG165400
rosa_wichuraiana Rw3G013570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 48
AclWI GGATC 2 cut(s) 278, 300
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 184, 220
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 2 cut(s) 278, 300
Aor13HI TCCGGA 1 cut(s) 48
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 16
BccI CCATC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 60, 78
BmiI GGNNCC 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 235
BsaBI GATNNNNATC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 67
BseAI TCCGGA 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 332
BseJI GATNNNNATC 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 24, 49
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 3 cut(s) 254, 283, 305
BspEI TCCGGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 2 cut(s) 278, 300
BspT104I TTCGAA 1 cut(s) 16
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 3 cut(s) 254, 283, 305
BssT1I CCWWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 13, 131
BstBAI YACGTR 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 16
BstKTI GATC 3 cut(s) 257, 286, 308
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 3 cut(s) 254, 283, 305
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 232
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 1 cut(s) 316
CviJI RGCY 2 cut(s) 27, 353
CviKI_1 RGCY 2 cut(s) 27, 353
CviQI GTAC 1 cut(s) 232
DpnI GATC 3 cut(s) 256, 285, 307
DpnII GATC 3 cut(s) 254, 283, 305
Eco130I CCWWGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 319
FaiI YATR 2 cut(s) 290, 317
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 315
FblI GTMKAC 1 cut(s) 152
FspBI CTAG 2 cut(s) 60, 78
HapII CCGG 2 cut(s) 24, 49
HgaI GACGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 319
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 5 cut(s) 18, 63, 81, 122, 244
HpaII CCGG 2 cut(s) 24, 49
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 153, 226, 339
Hpy188I TCNGA 2 cut(s) 259, 274
Hpy188III TCNNGA 4 cut(s) 49, 78, 184, 322
Hpy8I GTNNAC 3 cut(s) 153, 226, 339
Hpy99I CGWCG 2 cut(s) 154, 157
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 13, 131
HpyCH4IV ACGT 2 cut(s) 222, 234
HpySE526I ACGT 2 cut(s) 222, 234
Hsp92II CATG 1 cut(s) 319
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 3 cut(s) 254, 283, 305
LmnI GCTCC 3 cut(s) 95, 350, 400
LpnPI CCDG 5 cut(s) 37, 62, 145, 265, 307
MaeI CTAG 2 cut(s) 60, 78
MaeII ACGT 2 cut(s) 222, 234
MaeIII GTNAC 1 cut(s) 235
MalI GATC 3 cut(s) 256, 285, 307
MboI GATC 3 cut(s) 254, 283, 305
MboII GAAGA 3 cut(s) 63, 187, 287
MflI RGATCY 1 cut(s) 305
MluCI AATT 2 cut(s) 178, 215
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 4 cut(s) 117, 150, 252, 328
MnlI CCTC 6 cut(s) 46, 85, 114, 117, 258, 383
MroI TCCGGA 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 29
MspI CCGG 2 cut(s) 24, 49
NdeII GATC 3 cut(s) 254, 283, 305
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 235
NspV TTCGAA 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 4 cut(s) 18, 63, 81, 244
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 352
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SalI GTCGAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 3 cut(s) 254, 283, 305
SchI GAGTC 1 cut(s) 131
SetI ASST 4 cut(s) 106, 225, 237, 338
SfuI TTCGAA 1 cut(s) 16
SgrDI CGTCGACG 1 cut(s) 151
Sse9I AATT 2 cut(s) 178, 215
SspMI CTAG 2 cut(s) 60, 78
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 13, 131
TaiI ACGT 2 cut(s) 225, 237
TaqI TCGA 4 cut(s) 16, 109, 152, 282
TasI AATT 2 cut(s) 178, 215
TfiI GAWTC 4 cut(s) 18, 63, 81, 244
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspGWI ACGGA 2 cut(s) 74, 170
XapI RAATTY 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 60, 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.