Prupe.6G242800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015460
Physical Location & Seq
Forward (+)
24109332 .. 24111816
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G242800.1

Sequence Viewer

Length: 459 bp
ATGGATATTCAAGCTCGAATAGGAAGCTTAACATCCTCACGTTATTTCTGGACCACTCGAAATAACTCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTGTTACTCGCCACTGAAACCTTTCTGTTCAAGAAGGGACTCTCAAGAGCCCCAACAAAACGGTGACTCCAACGGTGATAAATTCTCAACAGATTGGGACAAGGCCTGGTCAAATATCAGAAAGCAAGGGAAAACGAAGAAGAAGAAGAAGAGCCTCTTCTCACAGTTCTCTCCAAACAAGTATGTGACCTGGAACCCTACTCAGTCTAATTACCCATCATCTGAGGAGGTTGATCCAATCAAGAGGACAGAGAGGTCCAACCTCATGTTATGGACTAGCCCCAGGTTCACTCTTGCAGGGGCTATTGTCATTGTCACCTTCCTTTTGGTTTATACCATTATTGCACCAGTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.24

Weight (kDa)

9.92

Isoelectric Point (pI)

66.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53470 AT3G53470
fragaria_vesca FvH4_6g15150 FvH4_6g15150
malus_domestica MD12G1126200.v1.1
prunus_persica Prupe.6G242800_v2.0.a1
pyrus_communis pycom12g12440
rosa_chinensis RchiOBHm_Chr3g0468451
rosa_laevigata RLG00000024428
rosa_multiflora Rmu_sc0040156.1_g000005
rosa_roxburghii Rroxscaffold_6G00412750
rosa_rugosa Rorug03G0095500
rosa_samantha Rh3AG143800 Rh3BG165800 Rh3DG165400
rosa_wichuraiana Rw3G013570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 182
AgsI TTSAA 2 cut(s) 11, 132
AjnI CCWGG 3 cut(s) 206, 290, 383
AluBI AGCT 2 cut(s) 14, 27
AluI AGCT 2 cut(s) 14, 27
AlwI GGATC 1 cut(s) 329
AoxI GGCC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 51, 357
AsuHPI GGTGA 3 cut(s) 176, 188, 409
AvaII GGWCC 2 cut(s) 51, 357
BanII GRGCYC 1 cut(s) 153
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 3 cut(s) 208, 292, 385
BfaI CTAG 1 cut(s) 378
Bme1390I CCNGG 3 cut(s) 208, 292, 385
Bme18I GGWCC 2 cut(s) 51, 357
BmgT120I GGNCC 2 cut(s) 51, 357
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 3 cut(s) 208, 292, 385
BpuEI CTTGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bse1I ACTGG 1 cut(s) 449
BseBI CCWGG 3 cut(s) 208, 292, 385
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 315, 317
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 341
BshFI GGCC 1 cut(s) 206
BslFI GGGAC 2 cut(s) 152, 212
BsmFI GGGAC 2 cut(s) 152, 212
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 334
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 2 cut(s) 316, 316
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 1 cut(s) 334
Bst2UI CCWGG 3 cut(s) 208, 292, 385
Bst4CI ACNGT 3 cut(s) 164, 176, 267
Bst6I CTCTTC 2 cut(s) 245, 263
BstDEI CTNAG 2 cut(s) 303, 324
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstNI CCWGG 3 cut(s) 208, 292, 385
BstSCI CCNGG 3 cut(s) 206, 290, 383
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 51, 357
CviAII CATG 1 cut(s) 367
CviJI RGCY 7 cut(s) 14, 27, 151, 206, 255, 381, 404
CviKI_1 RGCY 7 cut(s) 14, 27, 151, 206, 255, 381, 404
DdeI CTNAG 2 cut(s) 303, 324
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
Eam1104I CTCTTC 2 cut(s) 245, 263
EarI CTCTTC 2 cut(s) 245, 263
Eco147I AGGCCT 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 51, 357
EcoRII CCWGG 3 cut(s) 206, 290, 383
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 370
FaiI YATR 4 cut(s) 285, 368, 373, 435
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 2 cut(s) 152, 212
FatI CATG 1 cut(s) 366
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 1 cut(s) 378
HaeIII GGCC 1 cut(s) 206
Hin1II CATG 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 2 cut(s) 140, 167
HphI GGTGA 3 cut(s) 176, 188, 409
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 2 cut(s) 221, 325
Hpy188III TCNNGA 4 cut(s) 49, 132, 146, 343
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 2 cut(s) 129, 430
HpyCH4III ACNGT 3 cut(s) 164, 176, 267
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 398, 446
HpyF3I CTNAG 2 cut(s) 303, 324
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 245
LpnPI CCDG 8 cut(s) 34, 193, 220, 277, 304, 370, 384, 397
MaeI CTAG 1 cut(s) 378
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 4 cut(s) 104, 164, 286, 415
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 182, 310
MlyI GAGTC 2 cut(s) 134, 161
MmeI TCCRAC 2 cut(s) 195, 384
MnlI CCTC 7 cut(s) 46, 266, 319, 322, 339, 348, 374
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 29, 453
MspR9I CCNGG 3 cut(s) 208, 292, 385
MvaI CCWGG 3 cut(s) 208, 292, 385
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 3 cut(s) 164, 286, 415
PceI AGGCCT 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 122
PleI GAGTC 2 cut(s) 134, 161
PpsI GAGTC 2 cut(s) 134, 161
Psp6I CCWGG 3 cut(s) 206, 290, 383
PspGI CCWGG 3 cut(s) 206, 290, 383
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 51, 357
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 29, 453
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 51, 357
SchI GAGTC 2 cut(s) 134, 161
ScrFI CCNGG 3 cut(s) 208, 292, 385
SduI GDGCHC 1 cut(s) 153
SinI GGWCC 2 cut(s) 51, 357
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 2 cut(s) 182, 310
SseBI AGGCCT 1 cut(s) 206
SspMI CTAG 1 cut(s) 378
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 3 cut(s) 206, 290, 383
TaaI ACNGT 3 cut(s) 164, 176, 267
TaiI ACGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 16, 58
TasI AATT 2 cut(s) 182, 310
Tru1I TTAA 2 cut(s) 29, 453
Tru9I TTAA 2 cut(s) 29, 453
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 3 cut(s) 164, 286, 415
Tsp45I GTSAC 3 cut(s) 164, 286, 415
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 51, 357
XapI RAATTY 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.