FvH4_6g15150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015460
Physical Location & Seq
Reverse (-)
9408011 .. 9410012
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15150.t1

Sequence Viewer

Length: 438 bp
ATGGATATTCAAGCTCGATTAGGAAGCGTAGCCTCGCCTCACTTTCTCTGGATCACTCCAAAACGCAAACCTTCGTCTTCTTCTTCTCGCTCTTCGCCATTGAGACCTGTCTGCAACAAAAGAGGCTCCCAAGAACCCCGGCAAAACGGTGACAGTGGTGATAAATTCTCAACAGATTGGGACAAGGCCTGGTCAAATATCAAGAAGCAAAAGAAGAACAAGAAGGGATTCTTCTCACAATTCTCTCCCAACAAGTATGTGACCTGGGATCCTAGGCCTTCTGATTATCCACTATCTGAGGAAGTTGATCCCATCAAGAGGACAGAGAGGTCCAATCTTATGTTATGGACTAGCCCAAGGTTTACTTTAGCAGGAGCAATTGTAATTGTCACCTTCCTCTTGGTTTACACCATTATTGTACCATATCAAGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.56

Weight (kDa)

10.05

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53470 AT3G53470
fragaria_vesca FvH4_6g15150 FvH4_6g15150
malus_domestica MD12G1126200.v1.1
prunus_persica Prupe.6G242800_v2.0.a1
pyrus_communis pycom12g12440
rosa_chinensis RchiOBHm_Chr3g0468451
rosa_laevigata RLG00000024428
rosa_multiflora Rmu_sc0040156.1_g000005
rosa_roxburghii Rroxscaffold_6G00412750
rosa_rugosa Rorug03G0095500
rosa_samantha Rh3AG143800 Rh3BG165800 Rh3DG165400
rosa_wichuraiana Rw3G013570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
AclWI GGATC 4 cut(s) 59, 263, 276, 302
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 318, 428
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 2 cut(s) 188, 263
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 4 cut(s) 59, 263, 276, 302
AoxI GGCC 2 cut(s) 186, 275
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 227
AspA2I CCTAGG 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 161, 170, 382
AvaII GGWCC 1 cut(s) 330
AvrII CCTAGG 1 cut(s) 272
BamHI GGATCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 2 cut(s) 190, 265
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 273, 351
BlnI CCTAGG 1 cut(s) 272
Bme1390I CCNGG 3 cut(s) 139, 190, 265
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 127, 270
BmrFI CCNGG 3 cut(s) 139, 190, 265
BpiI GAAGAC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 4 cut(s) 137, 264, 272, 356
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 428
BseBI CCWGG 2 cut(s) 190, 265
BseDI CCNNGG 4 cut(s) 137, 264, 272, 356
BseLI CCNNNNNNNGG 2 cut(s) 318, 428
BseMII CTCAG 1 cut(s) 288
BshFI GGCC 2 cut(s) 188, 277
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 318, 428
BsmAI GTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 188, 277
Bso31I GGTCTC 1 cut(s) 97
Bsp143I GATC 3 cut(s) 51, 268, 307
BspANI GGCC 2 cut(s) 188, 277
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 127, 270
BspPI GGATC 4 cut(s) 59, 263, 276, 302
BspQI GCTCTTC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 97
BssECI CCNNGG 4 cut(s) 137, 264, 272, 356
BssMI GATC 3 cut(s) 51, 268, 307
BssT1I CCWWGG 2 cut(s) 272, 356
Bst2UI CCWGG 2 cut(s) 190, 265
Bst4CI ACNGT 2 cut(s) 149, 155
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 297
BstKTI GATC 3 cut(s) 54, 271, 310
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 3 cut(s) 51, 268, 307
BstNI CCWGG 2 cut(s) 190, 265
BstSCI CCNGG 3 cut(s) 137, 188, 263
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 188, 277
BtsIMutI CAGTG 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 330
Csp6I GTAC 1 cut(s) 419
CviJI RGCY 6 cut(s) 14, 32, 126, 188, 277, 354
CviKI_1 RGCY 6 cut(s) 14, 32, 126, 188, 277, 354
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 1 cut(s) 297
DpnI GATC 3 cut(s) 53, 270, 309
DpnII GATC 3 cut(s) 51, 268, 307
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 272, 356
Eco147I AGGCCT 2 cut(s) 188, 277
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 188, 263
EcoT14I CCWWGG 2 cut(s) 272, 356
ErhI CCWWGG 2 cut(s) 272, 356
FaiI YATR 4 cut(s) 258, 341, 346, 424
FalI AAGNNNNNCTT 4 cut(s) 215, 247, 349, 381
FaqI GGGAC 1 cut(s) 194
FspBI CTAG 2 cut(s) 273, 351
HaeIII GGCC 2 cut(s) 188, 277
HapII CCGG 1 cut(s) 139
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 139
HphI GGTGA 3 cut(s) 161, 170, 382
Hpy166II GTNNAC 2 cut(s) 363, 406
Hpy188I TCNGA 2 cut(s) 283, 298
Hpy188III TCNNGA 3 cut(s) 49, 202, 316
Hpy8I GTNNAC 2 cut(s) 363, 406
HpyAV CCTTC 4 cut(s) 81, 217, 288, 403
HpyCH4III ACNGT 2 cut(s) 149, 155
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 297
Kzo9I GATC 3 cut(s) 51, 268, 307
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 131, 374
LpnPI CCDG 8 cut(s) 34, 120, 152, 175, 202, 250, 277, 357
MaeI CTAG 2 cut(s) 273, 351
MaeIII GTNAC 3 cut(s) 149, 259, 388
MalI GATC 3 cut(s) 53, 270, 309
MboI GATC 3 cut(s) 51, 268, 307
MboII GAAGA 6 cut(s) 69, 72, 75, 84, 223, 226
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 268
MluCI AATT 5 cut(s) 164, 239, 378, 384, 433
MnlI CCTC 7 cut(s) 43, 48, 116, 292, 312, 321, 407
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 1 cut(s) 436
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 3 cut(s) 139, 190, 265
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 2 cut(s) 190, 265
NciI CCSGG 1 cut(s) 139
NdeII GATC 3 cut(s) 51, 268, 307
NlaIV GGNNCC 2 cut(s) 127, 270
NmuCI GTSAC 3 cut(s) 149, 259, 388
PceI AGGCCT 2 cut(s) 188, 277
PciSI GCTCTTC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 188, 263
PspGI CCWGG 2 cut(s) 188, 263
PspN4I GGNNCC 2 cut(s) 127, 270
PspPI GGNCC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 436
Sau3AI GATC 3 cut(s) 51, 268, 307
Sau96I GGNCC 1 cut(s) 330
ScrFI CCNGG 3 cut(s) 139, 190, 265
SetI ASST 8 cut(s) 16, 73, 109, 266, 332, 362, 395, 433
SinI GGWCC 1 cut(s) 330
Sse9I AATT 5 cut(s) 164, 239, 378, 384, 433
SseBI AGGCCT 2 cut(s) 188, 277
SspMI CTAG 2 cut(s) 273, 351
StuI AGGCCT 2 cut(s) 188, 277
StyD4I CCNGG 3 cut(s) 137, 188, 263
StyI CCWWGG 2 cut(s) 272, 356
TaaI ACNGT 2 cut(s) 149, 155
TaqI TCGA 1 cut(s) 16
TasI AATT 5 cut(s) 164, 239, 378, 384, 433
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 3 cut(s) 149, 259, 388
Tsp45I GTSAC 3 cut(s) 149, 259, 388
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 2 cut(s) 273, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.