Rorug03G0095500

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002824
Physical Location & Seq
Reverse (-)
7453756 .. 7456656
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0095500.1

Sequence Viewer

Length: 768 bp
ATGATTAAAGCAATGATGAAACGAACCCAGGAGGTGCTGTTGTTTCTGATTCTGGCTTTGTTCTACAAGGCCACCGGCATGAAGCCTTGCTCTAAGCCCCCGCAAGTCGACTGTGGCGGCTTTTGTTTGAGCTGGAGACTGGCGGTGGAGGCCAACAATGTGCGTGGGTGGCGCACCGTGCCAACCCAGTGCTTGCTCCATCTCGAAACATACATGATTGGAGGACAGTACGACCGCGACATAGAATTAATTGTTGGTGAAATTATGAGTTACGTAAACGGAATCGTTCCCTCGGATGATGGCATGGATGCATGGATCTTGGATGTGGACGACACTTGCATATCCAATGTCTTATACTACAAGGGAAAGAGATACGGGTGTGACCCTTACGATCCATCGGGGTTCCAAGCATGGGCTATGTCTGGAAAGTGTCCGGCAATTCCTGCTATGCTGAGATTGTTTAGCAACCTGGTGAATAGGGGGTTTAAGGTTATTTTGCTTACCGGAAGGGATGAAGAAACACTTGGTCAAGTCACTATCGAAAACCTGAATAATCAAGGATTTGTTGATTATGAACGGTTGATTTTGAGGACCGCAGCTTACAAAGGGCAGGGCGCGGTGGCGTACAAGTCAGCGATTCGGAAGCAACTGGTGGAAGAAGGTTACAGGATATGGGGGAATGTAGGAGATCAATGGAGTGATCTGCACGGAGATTATATAGGCAACCGCACGTTTAAGCTTCCTAATCCCATGTACTTTGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

255

Amino Acids

28.83

Weight (kDa)

6.72

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 36 - 254 1.4e-73 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AccII CGCG 2 cut(s) 237, 617
AciI CCGC 7 cut(s) 101, 117, 143, 235, 594, 617, 727
AclWI GGATC 2 cut(s) 323, 386
AfaI GTAC 3 cut(s) 230, 626, 755
AfiI CCNNNNNNNGG 1 cut(s) 412
AjnI CCWGG 2 cut(s) 27, 468
AjuI GAANNNNNNNTTGG 4 cut(s) 237, 269, 507, 539
AluBI AGCT 3 cut(s) 132, 599, 739
AluI AGCT 3 cut(s) 132, 599, 739
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 323, 386
AoxI GGCC 2 cut(s) 69, 150
ApeKI GCWGC 1 cut(s) 596
AseI ATTAAT 1 cut(s) 248
AspLEI GCGC 2 cut(s) 174, 617
AspS9I GGNCC 1 cut(s) 591
AsuHPI GGTGA 2 cut(s) 269, 484
AvaII GGWCC 1 cut(s) 591
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BbvI GCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 207, 293, 403
BciT130I CCWGG 2 cut(s) 29, 470
BcoDI GTCTC 1 cut(s) 130
BisI GCNGC 2 cut(s) 118, 597
BlsI GCNGC 2 cut(s) 119, 598
Bme1390I CCNGG 2 cut(s) 29, 470
Bme18I GGWCC 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 591
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 2 cut(s) 29, 470
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 27, 291
BsaWI WCCGGW 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 144, 187, 654
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 29, 470
BseDI CCNNGG 2 cut(s) 27, 291
BseGI GGATG 4 cut(s) 301, 313, 328, 517
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 3 cut(s) 144, 187, 654
BseXI GCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 689
Bsh1236I CGCG 2 cut(s) 237, 617
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 71, 152
BsiEI CGRYCG 1 cut(s) 235
BsiSI CCGG 3 cut(s) 75, 434, 504
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 71, 152
Bsp143I GATC 4 cut(s) 315, 391, 688, 700
BspACI CCGC 7 cut(s) 101, 117, 143, 235, 594, 617, 727
BspANI GGCC 2 cut(s) 71, 152
BspCNI CTCAG 1 cut(s) 444
BspFNI CGCG 2 cut(s) 237, 617
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 2 cut(s) 323, 386
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 3 cut(s) 144, 187, 654
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 27, 291
BssMI GATC 4 cut(s) 315, 391, 688, 700
Bst2UI CCWGG 2 cut(s) 29, 470
Bst4CI ACNGT 4 cut(s) 113, 178, 228, 579
BstAPI GCANNNNNTGC 1 cut(s) 443
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 93, 452
BstF5I GGATG 4 cut(s) 301, 313, 328, 517
BstFNI CGCG 2 cut(s) 237, 617
BstHHI GCGC 2 cut(s) 174, 617
BstKTI GATC 4 cut(s) 318, 394, 691, 703
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 4 cut(s) 315, 391, 688, 700
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 149, 169, 178, 443
BstNI CCWGG 2 cut(s) 29, 470
BstSCI CCNGG 2 cut(s) 27, 468
BstSNI TACGTA 1 cut(s) 274
BstUI CGCG 2 cut(s) 237, 617
BstV1I GCAGC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 2 cut(s) 71, 152
BtsCI GGATG 4 cut(s) 301, 313, 328, 517
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 2 cut(s) 174, 617
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 591
CsiI ACCWGGT 1 cut(s) 468
Csp6I GTAC 3 cut(s) 229, 625, 754
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 6 cut(s) 79, 214, 304, 312, 411, 751
CviQI GTAC 3 cut(s) 229, 625, 754
DdeI CTNAG 2 cut(s) 93, 452
DpnI GATC 4 cut(s) 317, 393, 690, 702
DpnII GATC 4 cut(s) 315, 391, 688, 700
Eco105I TACGTA 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 27, 468
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 6 cut(s) 82, 217, 307, 315, 414, 754
FalI AAGNNNNNCTT 2 cut(s) 507, 539
FatI CATG 6 cut(s) 78, 213, 303, 311, 410, 750
FauI CCCGC 1 cut(s) 108
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 118, 597
FokI GGATG 4 cut(s) 308, 320, 335, 524
Fsp4HI GCNGC 2 cut(s) 118, 597
GlaI GCGC 2 cut(s) 173, 616
GluI GCNGC 2 cut(s) 118, 597
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 2 cut(s) 71, 152
HapII CCGG 3 cut(s) 75, 434, 504
HhaI GCGC 2 cut(s) 174, 617
Hin1II CATG 6 cut(s) 82, 217, 307, 315, 414, 754
Hin6I GCGC 2 cut(s) 172, 615
HinP1I GCGC 2 cut(s) 172, 615
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 3 cut(s) 49, 282, 637
HpaII CCGG 3 cut(s) 75, 434, 504
HphI GGTGA 2 cut(s) 269, 484
Hpy166II GTNNAC 3 cut(s) 109, 277, 328
Hpy188I TCNGA 3 cut(s) 48, 295, 642
Hpy188III TCNNGA 2 cut(s) 203, 423
Hpy8I GTNNAC 3 cut(s) 109, 277, 328
HpyAV CCTTC 2 cut(s) 501, 653
HpyCH4III ACNGT 4 cut(s) 113, 178, 228, 579
HpyCH4IV ACGT 2 cut(s) 273, 731
HpyCH4V TGCA 3 cut(s) 311, 339, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 169, 178, 443
HpyF3I CTNAG 2 cut(s) 93, 452
HpySE526I ACGT 2 cut(s) 273, 731
Hsp92II CATG 6 cut(s) 82, 217, 307, 315, 414, 754
HspAI GCGC 2 cut(s) 172, 615
Kzo9I GATC 4 cut(s) 315, 391, 688, 700
LmnI GCTCC 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 1 cut(s) 298
MabI ACCWGGT 1 cut(s) 468
MaeII ACGT 2 cut(s) 273, 731
MaeIII GTNAC 4 cut(s) 269, 380, 532, 662
MalI GATC 4 cut(s) 317, 393, 690, 702
MboI GATC 4 cut(s) 315, 391, 688, 700
MboII GAAGA 2 cut(s) 527, 668
MflI RGATCY 1 cut(s) 315
MluCI AATT 4 cut(s) 245, 249, 261, 438
MnlI CCTC 5 cut(s) 25, 142, 215, 301, 582
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 5 cut(s) 6, 248, 486, 735, 766
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 3 cut(s) 75, 434, 504
MspR9I CCNGG 2 cut(s) 29, 470
MvaI CCWGG 2 cut(s) 29, 470
MvnI CGCG 2 cut(s) 237, 617
MwoI GCNNNNNNNGC 4 cut(s) 149, 169, 178, 443
NdeII GATC 4 cut(s) 315, 391, 688, 700
NlaIII CATG 6 cut(s) 82, 217, 307, 315, 414, 754
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 380, 532
NsiI ATGCAT 1 cut(s) 313
PfeI GAWTC 3 cut(s) 49, 282, 637
PkrI GCNGC 2 cut(s) 119, 598
Ppu21I YACGTR 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 27, 468
PspGI CCWGG 2 cut(s) 27, 468
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 591
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 3 cut(s) 230, 626, 755
RsaNI GTAC 3 cut(s) 229, 625, 754
RseI CAYNNNNRTG 1 cut(s) 77
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 5 cut(s) 6, 248, 486, 735, 766
SatI GCNGC 2 cut(s) 118, 597
Sau3AI GATC 4 cut(s) 315, 391, 688, 700
Sau96I GGNCC 1 cut(s) 591
ScrFI CCNGG 2 cut(s) 29, 470
SexAI ACCWGGT 1 cut(s) 468
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 77
SnaBI TACGTA 1 cut(s) 274
Sse9I AATT 4 cut(s) 245, 249, 261, 438
SsiI CCGC 7 cut(s) 101, 117, 143, 235, 594, 617, 727
StyD4I CCNGG 2 cut(s) 27, 468
TaaI ACNGT 4 cut(s) 113, 178, 228, 579
TaiI ACGT 2 cut(s) 276, 734
TaqI TCGA 3 cut(s) 108, 204, 540
TasI AATT 4 cut(s) 245, 249, 261, 438
TatI WGTACW 1 cut(s) 753
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 3 cut(s) 49, 282, 637
Tru1I TTAA 5 cut(s) 6, 248, 486, 735, 766
Tru9I TTAA 5 cut(s) 6, 248, 486, 735, 766
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 2 cut(s) 380, 532
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 2 cut(s) 380, 532
TspDTI ATGAA 4 cut(s) 32, 95, 528, 588
TspGWI ACGGA 2 cut(s) 294, 723
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 591
VspI ATTAAT 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.