Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Reverse (-)

14501885 .. 14506092

Gene Structure 4208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCCGCCAAAGGCATCGAAGGCCGACTTGGCGAAGAAGCAGAAGGTTGTGGAGGACAAAACCTTCGGGCTCAAGAACAAGAACAAGAGCAAGAACGTCCAGAAGTACGTCCAGAATCTCAAGCAGGCAGTCCAGCCCAAAGTGGACCCAGCCAAAGCCAAGAAAAAGAAAGAGGAAGAGAAAGCCAAAGAGAAGGAGCTCAATGATTTGTTTAAGGTTGCTGTTAGTCAGCCGAAAGTGCCAGCTGGTGTTGATCCCAAGTCTATATTGTGCGAGTTTTTCAAGTTTGGGCAATGTACCAAGGGATTCAAGTGCAAGTTTTCGCATGACTTGAATGTCCAGAGGAAGGGTGAAAAGATTGATATTTACAGTGATAAGCGTGATGATGAAGACACTATGGAGGATTGGGATCAAGCGACGTTGGAAAAGGTTGTGGAGTCAAAGAAGAATGAGTATAACCAGAATAAGCCCACTGAAATTGTTTGCAAACACTTCTTAGATGCAGTGGAAAAGAAACAGTATGGTTGGTTTTGGTCTTGTCCAAATGGTGGAAAAGAGTGCCACTACAGACATGCTCTTCCTCCTGGTTATGTTTTGAAATCTCAGATGAAGGCACTTCTTGATGAAGAGGCTGAAAAAGTTGCCATTGAGGATGAAATTGAAAATCAGCGTGCAAAAGTAACAACCATTACTCCAATGACCACTGAGTTGTTCATGCAATGGAGGAATAAAAAGACAGAAGAGAAAGAGGCTGGCTTGGCTGCACAACGAGCTGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGTTGTTTCTTTCGGATGCTAGTGTGTTTGTGGATGATGCTGAAGCATATGAAAAATACCAAAGACAAGATCCTGAGGCTTCTGAAGAGAAGGCCAAAGACAACTCAGCAGCAGGAGGAGGACCAAGCGCCTCTACTAGTGCTGCTGGTTCTGAAGTCCCCGTCGATAATGATAATGAAGACGATGATGATGATGATGACGACGAGTTGGACTTGGATGAGTTAAATGAACTTGAAGCAAGTTTGTCAAAAACATCCATTCAGATACGGGAGCCCGGTATAGAGACATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

367

Amino Acids

41.37

Weight (kDa)

5.14

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DFRP_C	PF16543	213 - 294	5.7e-17	DRG Family Regulatory Proteins, Tma46

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	548
AciI	CCGC	2 cut(s)	5, 793
AclWI	GGATC	3 cut(s)	248, 417, 872
AcuI	CTGAAG	3 cut(s)	870, 912, 981
AfaI	GTAC	2 cut(s)	107, 298
AfiI	CCNNNNNNNGG	2 cut(s)	346, 548
AgsI	TTSAA	6 cut(s)	283, 310, 334, 598, 662, 1043
AhlI	ACTAGT	1 cut(s)	944
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	3 cut(s)	199, 245, 773
AluI	AGCT	3 cut(s)	199, 245, 773
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	1085
AlwI	GGATC	3 cut(s)	248, 417, 872
AoxI	GGCC	2 cut(s)	21, 900
ApeKI	GCWGC	3 cut(s)	761, 917, 950
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	1 cut(s)	938
AspS9I	GGNCC	2 cut(s)	145, 929
AsuC2I	CCSGG	1 cut(s)	1083
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	145, 929
AxyI	CCTNAGG	1 cut(s)	882
BanII	GRGCYC	3 cut(s)	72, 201, 1083
BbsI	GAAGAC	2 cut(s)	396, 993
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	748, 929, 937
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	1083
BcoDI	GTCTC	1 cut(s)	1085
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	2 cut(s)	828, 945
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	939
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	4 cut(s)	5, 762, 918, 951
BlsI	GCNGC	4 cut(s)	6, 763, 919, 952
Bme1390I	CCNGG	2 cut(s)	585, 1083
Bme18I	GGWCC	2 cut(s)	145, 929
BmgT120I	GGNCC	2 cut(s)	145, 929
BmiI	GGNNCC	2 cut(s)	147, 1080
BmrFI	CCNGG	2 cut(s)	585, 1083
BmsI	GCATC	4 cut(s)	23, 490, 814, 835
BpiI	GAAGAC	2 cut(s)	396, 993
BpuEI	CTTGAG	2 cut(s)	56, 104
BpuMI	CCSGG	1 cut(s)	1083
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 548
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	2 cut(s)	299, 725
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	5 cut(s)	658, 829, 847, 1030, 1061
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	346, 548
BseMI	GCAATG	2 cut(s)	299, 725
BseMII	CTCAG	5 cut(s)	617, 696, 765, 873, 927
BseRI	GAGGAG	1 cut(s)	939
BseXI	GCAGC	3 cut(s)	748, 929, 937
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	2 cut(s)	23, 902
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	1083
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	2 cut(s)	346, 548
BsmAI	GTCTC	1 cut(s)	1085
BsmFI	GGGAC	1 cut(s)	950
BsnI	GGCC	2 cut(s)	23, 902
Bsp1286I	GDGCHC	3 cut(s)	72, 201, 1083
Bsp143I	GATC	3 cut(s)	253, 409, 877
BspACI	CCGC	2 cut(s)	5, 793
BspANI	GGCC	2 cut(s)	23, 902
BspCNI	CTCAG	5 cut(s)	616, 697, 766, 874, 926
BspLI	GGNNCC	2 cut(s)	147, 1080
BspPI	GGATC	3 cut(s)	248, 417, 872
BspQI	GCTCTTC	1 cut(s)	582
BsrDI	GCAATG	2 cut(s)	299, 725
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	253, 409, 877
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	2 cut(s)	371, 519
Bst6I	CTCTTC	5 cut(s)	171, 582, 621, 735, 888
BstC8I	GCNNGC	4 cut(s)	126, 243, 672, 754
BstDEI	CTNAG	7 cut(s)	496, 603, 705, 774, 783, 882, 913
BstF5I	GGATG	5 cut(s)	658, 829, 847, 1030, 1061
BstH2I	RGCGCY	1 cut(s)	939
BstHHI	GCGC	1 cut(s)	938
BstKTI	GATC	3 cut(s)	256, 412, 880
BstMAI	GTCTC	1 cut(s)	1085
BstMBI	GATC	3 cut(s)	253, 409, 877
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 29, 238, 758, 770, 779
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	583, 1081
BstSFI	CTRYAG	1 cut(s)	565
BstV1I	GCAGC	3 cut(s)	748, 929, 937
BstV2I	GAAGAC	2 cut(s)	396, 993
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
Bsu36I	CCTNAGG	1 cut(s)	882
BsuRI	GGCC	2 cut(s)	23, 902
BtsCI	GGATG	5 cut(s)	658, 829, 847, 1030, 1061
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	4 cut(s)	376, 471, 510, 702
Cac8I	GCNNGC	4 cut(s)	126, 243, 672, 754
CfoI	GCGC	1 cut(s)	938
Cfr13I	GGNCC	2 cut(s)	145, 929
Csp6I	GTAC	2 cut(s)	106, 297
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	4 cut(s)	326, 572, 715, 796
CviQI	GTAC	2 cut(s)	106, 297
DdeI	CTNAG	7 cut(s)	496, 603, 705, 774, 783, 882, 913
DpnI	GATC	3 cut(s)	255, 411, 879
DpnII	GATC	3 cut(s)	253, 409, 877
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	5 cut(s)	171, 582, 621, 735, 888
EarI	CTCTTC	5 cut(s)	171, 582, 621, 735, 888
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	3 cut(s)	72, 201, 1083
Eco47I	GGWCC	2 cut(s)	145, 929
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	3 cut(s)	870, 912, 981
Eco81I	CCTNAGG	1 cut(s)	882
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	3 cut(s)	72, 201, 1083
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	4 cut(s)	329, 575, 718, 799
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	4 cut(s)	325, 571, 714, 795
FauNDI	CATATG	1 cut(s)	856
Fnu4HI	GCNGC	4 cut(s)	5, 762, 918, 951
FokI	GGATG	5 cut(s)	665, 836, 854, 1037, 1048
FriOI	GRGCYC	3 cut(s)	72, 201, 1083
Fsp4HI	GCNGC	4 cut(s)	5, 762, 918, 951
FspBI	CTAG	2 cut(s)	828, 945
GlaI	GCGC	1 cut(s)	937
GluI	GCNGC	4 cut(s)	5, 762, 918, 951
GsaI	CCCAGC	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	939
HaeIII	GGCC	2 cut(s)	23, 902
HapII	CCGG	1 cut(s)	1083
HhaI	GCGC	1 cut(s)	938
Hin1II	CATG	4 cut(s)	329, 575, 718, 799
Hin6I	GCGC	1 cut(s)	936
HinP1I	GCGC	1 cut(s)	936
HinfI	GANTC	3 cut(s)	115, 306, 437
HpaII	CCGG	1 cut(s)	1083
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	5 cut(s)	606, 823, 892, 961, 1071
Hpy188III	TCNNGA	8 cut(s)	73, 100, 112, 340, 620, 806, 881, 1098
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	3 cut(s)	421, 974, 1013
HpyAV	CCTTC	7 cut(s)	13, 37, 73, 187, 340, 604, 892
HpyCH4III	ACNGT	2 cut(s)	371, 519
HpyCH4IV	ACGT	3 cut(s)	96, 108, 419
HpyCH4V	TGCA	6 cut(s)	315, 486, 503, 674, 718, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 29, 238, 758, 770, 779
HpyF3I	CTNAG	7 cut(s)	496, 603, 705, 774, 783, 882, 913
HpySE526I	ACGT	3 cut(s)	96, 108, 419
Hsp92II	CATG	4 cut(s)	329, 575, 718, 799
HspAI	GCGC	1 cut(s)	936
Kzo9I	GATC	3 cut(s)	253, 409, 877
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	2 cut(s)	196, 1078
Lsp1109I	GCAGC	3 cut(s)	748, 929, 937
LweI	GCATC	4 cut(s)	23, 490, 814, 835
MaeI	CTAG	2 cut(s)	828, 945
MaeII	ACGT	3 cut(s)	96, 108, 419
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	3 cut(s)	255, 411, 879
MboI	GATC	3 cut(s)	253, 409, 877
MboII	GAAGA	9 cut(s)	46, 188, 401, 457, 569, 638, 752, 905, 998
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	3 cut(s)	72, 201, 1083
MluCI	AATT	2 cut(s)	477, 657
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	402, 996
MseI	TTAA	2 cut(s)	213, 1031
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	1083
MspR9I	CCNGG	2 cut(s)	585, 1083
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	6 cut(s)	20, 29, 238, 758, 770, 779
NciI	CCSGG	1 cut(s)	1083
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	3 cut(s)	253, 409, 877
NlaIII	CATG	4 cut(s)	329, 575, 718, 799
NlaIV	GGNNCC	2 cut(s)	147, 1080
NspI	RCATGY	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	115, 306
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	4 cut(s)	6, 763, 919, 952
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	147, 1080
PspPI	GGNCC	2 cut(s)	145, 929
PsuI	RGATCY	1 cut(s)	877
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	107, 298
RsaNI	GTAC	2 cut(s)	106, 297
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	213, 1031
SatI	GCNGC	4 cut(s)	5, 762, 918, 951
Sau3AI	GATC	3 cut(s)	253, 409, 877
Sau96I	GGNCC	2 cut(s)	145, 929
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	585, 1083
SduI	GDGCHC	3 cut(s)	72, 201, 1083
SfaNI	GCATC	4 cut(s)	23, 490, 814, 835
SfcI	CTRYAG	1 cut(s)	565
SinI	GGWCC	2 cut(s)	145, 929
SmlI	CTYRAG	2 cut(s)	71, 119
SmoI	CTYRAG	2 cut(s)	71, 119
SpeI	ACTAGT	1 cut(s)	944
Sse9I	AATT	2 cut(s)	477, 657
SsiI	CCGC	2 cut(s)	5, 793
SspMI	CTAG	2 cut(s)	828, 945
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	583, 1081
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	371, 519
TaiI	ACGT	3 cut(s)	99, 111, 422
TaqI	TCGA	2 cut(s)	17, 972
TasI	AATT	2 cut(s)	477, 657
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	115, 306
Tru1I	TTAA	2 cut(s)	213, 1031
Tru9I	TTAA	2 cut(s)	213, 1031
TscAI	CASTG	4 cut(s)	376, 478, 510, 709
TseI	GCWGC	3 cut(s)	761, 917, 950
TspDTI	ATGAA	8 cut(s)	402, 623, 639, 669, 703, 873, 999, 1050
TspRI	CASTG	4 cut(s)	376, 478, 510, 709
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	145, 929
XceI	RCATGY	1 cut(s)	575
XspI	CTAG	2 cut(s)	828, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.