Rw0G014190

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00634
OG0002824
Physical Location & Seq
Forward (+)
69881 .. 72740
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014190.1

Sequence Viewer

Length: 822 bp
ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCAAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAATAAGAGCAAGAATGTCCAGAAGTACGTCCAGACTCTCAAGCAGTCCGTCGAGCCCAAGCCTGATCTCTCCAAAACCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAGGCGAAGGACAAGGAACTAAATGAGTTGTTTAAGGTTGCTATCAGTCAACCAAAAGTACCAGTTGGTGTTGATCCTAAGTCTATATTATGCGAGTTTTATAAAGCGGGGCAGTGTGCTAAAGGTTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATCTTTACAGTGATAAGCGTCAAAATGAAACAATGGAGGAATGGGATCAAGAAACTTTGGAGAAAGTTGTGGAGTCAAAGAGAAAAGAGTACAATATAAACAAGCCAACTGATATTGTTTGTAAATACTTTTTGGAAGCAGTGGAGAAAAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTCCTCCAGGATATATTCTGAAATCTCAGATGAAACGTGCTAAGTTGAAAACTTCGACTCCAATGACTCCTGAGTTGTTCATAGATGCTGGCTTGGCTTCAAAAATGGCAGAGCGGGCTAAGAATGACCGTATGAGTGGTCGTGAACTGTTTTTGTCAGATTCAACCTTATTTGTGGATGATGCTGAGGCATCTGAGAAGTATCAAAGAGAGAAGGAATCTGAAGTTGCTGAAAAGAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

274

Amino Acids

31.58

Weight (kDa)

9.32

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccBSI CCGCTC 1 cut(s) 697
AciI CCGC 4 cut(s) 5, 162, 296, 697
AclWI GGATC 2 cut(s) 257, 423
AfaI GTAC 3 cut(s) 110, 249, 461
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 5 cut(s) 319, 343, 631, 684, 747
AjnI CCWGG 1 cut(s) 589
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AlwI GGATC 2 cut(s) 257, 423
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 13, 164
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
BanII GRGCYC 2 cut(s) 75, 141
BbvCI CCTCAGC 1 cut(s) 768
BbvI GCAGC 2 cut(s) 25, 151
BciT130I CCWGG 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 5, 14, 165
BlsI GCNGC 3 cut(s) 6, 15, 166
Bme1390I CCNGG 1 cut(s) 591
BmrFI CCNGG 1 cut(s) 591
BmsI GCATC 3 cut(s) 658, 754, 782
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 768
BpuEI CTTGAG 2 cut(s) 59, 107
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 591
BseGI GGATG 1 cut(s) 766
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMII CTCAG 4 cut(s) 623, 645, 759, 768
BseNI ACTGG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 25, 151
BshFI GGCC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 554
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 75, 141
Bsp143I GATC 5 cut(s) 48, 148, 262, 370, 415
BspACI CCGC 4 cut(s) 5, 162, 296, 697
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 4 cut(s) 622, 646, 760, 769
BspPI GGATC 2 cut(s) 257, 423
BspQI GCTCTTC 1 cut(s) 588
BsrBI CCGCTC 1 cut(s) 697
BsrI ACTGG 1 cut(s) 251
BssMI GATC 5 cut(s) 48, 148, 262, 370, 415
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 3 cut(s) 380, 713, 732
Bst6I CTCTTC 2 cut(s) 180, 588
BstC8I GCNNGC 3 cut(s) 579, 673, 699
BstDEI CTNAG 8 cut(s) 168, 267, 609, 624, 654, 702, 768, 777
BstF5I GGATG 1 cut(s) 766
BstKTI GATC 5 cut(s) 51, 151, 265, 373, 418
BstMBI GATC 5 cut(s) 48, 148, 262, 370, 415
BstMWI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 677, 698
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 25, 151
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 766
BtsI GCAGTG 2 cut(s) 308, 516
BtsIMutI CAGTG 3 cut(s) 308, 385, 516
Cac8I GCNNGC 3 cut(s) 579, 673, 699
CseI GACGC 1 cut(s) 377
Csp6I GTAC 3 cut(s) 109, 248, 460
CviAII CATG 2 cut(s) 335, 578
CviJI RGCY 8 cut(s) 26, 73, 139, 145, 475, 675, 680, 701
CviKI_1 RGCY 8 cut(s) 26, 73, 139, 145, 475, 675, 680, 701
CviQI GTAC 3 cut(s) 109, 248, 460
DdeI CTNAG 8 cut(s) 168, 267, 609, 624, 654, 702, 768, 777
DpnI GATC 5 cut(s) 50, 150, 264, 372, 417
DpnII GATC 5 cut(s) 48, 148, 262, 370, 415
Eam1104I CTCTTC 2 cut(s) 180, 588
EarI CTCTTC 2 cut(s) 180, 588
Eco24I GRGCYC 2 cut(s) 75, 141
EcoRII CCWGG 1 cut(s) 589
EcoT38I GRGCYC 2 cut(s) 75, 141
FaeI CATG 2 cut(s) 338, 581
FatI CATG 2 cut(s) 334, 577
FauI CCCGC 2 cut(s) 289, 690
Fnu4HI GCNGC 3 cut(s) 5, 14, 165
FokI GGATG 1 cut(s) 773
FriOI GRGCYC 2 cut(s) 75, 141
Fsp4HI GCNGC 3 cut(s) 5, 14, 165
GluI GCNGC 3 cut(s) 5, 14, 165
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 1 cut(s) 377
Hin1II CATG 2 cut(s) 338, 581
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HinfI GANTC 6 cut(s) 118, 443, 640, 649, 743, 800
Hpy166II GTNNAC 2 cut(s) 239, 728
Hpy188I TCNGA 6 cut(s) 351, 603, 612, 742, 778, 805
Hpy188III TCNNGA 6 cut(s) 76, 103, 115, 419, 653, 725
Hpy8I GTNNAC 2 cut(s) 239, 728
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 6 cut(s) 16, 76, 172, 184, 190, 790
HpyCH4III ACNGT 3 cut(s) 380, 713, 732
HpyCH4IV ACGT 2 cut(s) 111, 619
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 677, 698
HpyF3I CTNAG 8 cut(s) 168, 267, 609, 624, 654, 702, 768, 777
HpySE526I ACGT 2 cut(s) 111, 619
Hsp92II CATG 2 cut(s) 338, 581
Kzo9I GATC 5 cut(s) 48, 148, 262, 370, 415
LguI GCTCTTC 1 cut(s) 588
LpnPI CCDG 9 cut(s) 116, 128, 159, 264, 559, 576, 603, 657, 666
Lsp1109I GCAGC 2 cut(s) 25, 151
LweI GCATC 3 cut(s) 658, 754, 782
MaeII ACGT 2 cut(s) 111, 619
MalI GATC 5 cut(s) 50, 150, 264, 372, 417
MbiI CCGCTC 1 cut(s) 697
MboI GATC 5 cut(s) 48, 148, 262, 370, 415
MboII GAAGA 3 cut(s) 58, 197, 575
MhlI GDGCHC 2 cut(s) 75, 141
MlyI GAGTC 4 cut(s) 112, 452, 634, 643
MnlI CCTC 6 cut(s) 49, 175, 345, 400, 597, 763
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 677, 698
NdeII GATC 5 cut(s) 48, 148, 262, 370, 415
NlaIII CATG 2 cut(s) 338, 581
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 743, 800
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 3 cut(s) 6, 15, 166
PleI GAGTC 4 cut(s) 112, 451, 634, 643
PpsI GAGTC 4 cut(s) 112, 451, 634, 643
PsiI TTATAA 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
RsaI GTAC 3 cut(s) 110, 249, 461
RsaNI GTAC 3 cut(s) 109, 248, 460
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 5, 14, 165
Sau3AI GATC 5 cut(s) 48, 148, 262, 370, 415
SchI GAGTC 4 cut(s) 112, 452, 634, 643
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 2 cut(s) 75, 141
SetI ASST 6 cut(s) 68, 114, 228, 316, 622, 752
SfaNI GCATC 3 cut(s) 658, 754, 782
SmlI CTYRAG 2 cut(s) 74, 122
SmoI CTYRAG 2 cut(s) 74, 122
SphI GCATGC 1 cut(s) 581
SsiI CCGC 4 cut(s) 5, 162, 296, 697
StyD4I CCNGG 1 cut(s) 589
TaaI ACNGT 3 cut(s) 380, 713, 732
TaiI ACGT 2 cut(s) 114, 622
TaqI TCGA 3 cut(s) 20, 135, 638
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 743, 800
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 308, 385, 516
TseI GCWGC 2 cut(s) 13, 164
TspDTI ATGAA 3 cut(s) 411, 629, 652
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 3 cut(s) 308, 385, 516
XceI RCATGY 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.