Rw3G013530

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002824
Physical Location & Seq
Forward (+)
13390462 .. 13393892
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013530.1

Sequence Viewer

Length: 1125 bp
ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCAAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAATAAGAGCAAGAATGTCCAGAAGTACGTCCAGACTCTCAAGCAGTCCGTCGAGCCCAAGCCTGATCTCTCCAAAACCGCTGCTAAGAAGGCGAAGGACAAGGAACTAAATGAGTTGTTTAAGGTTGCTATCAGTCAACCAAAAGTACCATTTGGTGTTGATCCTAAGTCTATATTATGCGAGTTTTATAAAGCGGGGCAGTGTGCTAAAGGTTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATCTTTACAGTGATAAGCGTCAAAATGAAACAATGGAGGAATGGGATCAAGAAACTTTGGAGAAAGTTGTGGAGTCAAAGAGAAAAGAGTACAATATAAACAAGCCAACTGATATTGTTTGTAAATACTTTTTGGAAGCAGTGGAGAAAAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTCCTCCAGGATATATTCTGAAATCTCAGATGAAAGCTCTGTTGGAGGAAGAGACTGAAAAGATACCTATTGAGGAGGAGATTGAAGATCAGCGTGCTAAGTTGAAAACTTCGACTCCAATGACTCCTGAGTTGTTCATGCAATGGAAGAAGAAAAAGATAGCAGAAAGAGATGCTGGCTTGGCTTCAAAAATGGCAGAGCGGGCTAAGAATGACCGTATGAGTGGTCGTGAACTGTTTTTGTCAGATTCAACCTTATTTGTGGATGATGCTGAGGCATCTGAGAAGTATCAAAGAGAGAAGGAATCTGAAGTTGCTGAAAAGAAGGTTAGTAACAATGCTAATGGAGGTGGGCCAAATGTTGCTGATGGTGATGCCAAAGCTACCAACATGGATGACAGTGTTGAAGATGACGACTTGGACATAAATGAGTTAAACGAGTTGGAAGCAAGCTTATCAAAATTCAAGAGCCAGGCACTAGTGCTTAAGCCGAAGAGAGGCAGCCCAAAGTCTGCATACTTCCCGAGTGTGGACTCCATATTATTTTCTGTACACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

374

Amino Acids

42.56

Weight (kDa)

8.57

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 209 - 288 2.1e-18 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccBSI CCGCTC 1 cut(s) 766
AciI CCGC 4 cut(s) 5, 162, 278, 766
AclWI GGATC 2 cut(s) 239, 405
AcsI RAATTY 1 cut(s) 1025
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 4 cut(s) 110, 231, 443, 1116
AfiI CCNNNNNNNGG 3 cut(s) 536, 1061, 1093
AflII CTTAAG 1 cut(s) 1049
AgsI TTSAA 8 cut(s) 301, 325, 650, 670, 753, 816, 971, 1030
AhlI ACTAGT 1 cut(s) 1042
AjnI CCWGG 2 cut(s) 571, 1035
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 590, 622
AluBI AGCT 3 cut(s) 602, 947, 1017
AluI AGCT 3 cut(s) 602, 947, 1017
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 2 cut(s) 239, 405
Ama87I CYCGRG 1 cut(s) 1087
AoxI GGCC 2 cut(s) 24, 917
ApeKI GCWGC 3 cut(s) 13, 164, 1065
ApoI RAATTY 1 cut(s) 1025
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 1 cut(s) 917
AsuHPI GGTGA 1 cut(s) 947
AvaI CYCGRG 1 cut(s) 1087
BanII GRGCYC 2 cut(s) 75, 141
BbvCI CCTCAGC 1 cut(s) 837
BbvI GCAGC 3 cut(s) 25, 151, 1077
BccI CCATC 1 cut(s) 926
BciT130I CCWGG 2 cut(s) 573, 1037
BcoDI GTCTC 1 cut(s) 611
BcuI ACTAGT 1 cut(s) 1042
BfaI CTAG 1 cut(s) 1043
BfrI CTTAAG 1 cut(s) 1049
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 4 cut(s) 5, 14, 165, 1066
BlsI GCNGC 4 cut(s) 6, 15, 166, 1067
Bme1390I CCNGG 2 cut(s) 573, 1037
BmeT110I CYCGRG 1 cut(s) 1087
BmgT120I GGNCC 1 cut(s) 917
BmrFI CCNGG 2 cut(s) 573, 1037
BmsI GCATC 4 cut(s) 727, 823, 851, 928
BpmI CTGGAG 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 837
BpuEI CTTGAG 2 cut(s) 59, 107
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 1061, 1093
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 2 cut(s) 573, 1037
BseGI GGATG 2 cut(s) 835, 964
BseLI CCNNNNNNNGG 3 cut(s) 536, 1061, 1093
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 4 cut(s) 605, 684, 828, 837
BseRI GAGGAG 2 cut(s) 653, 656
BseXI GCAGC 3 cut(s) 25, 151, 1077
BshFI GGCC 2 cut(s) 26, 919
BsiHKCI CYCGRG 1 cut(s) 1087
BslI CCNNNNNNNGG 3 cut(s) 536, 1061, 1093
BsmAI GTCTC 1 cut(s) 611
BsnI GGCC 2 cut(s) 26, 919
BsoBI CYCGRG 1 cut(s) 1087
Bsp1286I GDGCHC 2 cut(s) 75, 141
Bsp1407I TGTACA 1 cut(s) 1114
Bsp143I GATC 6 cut(s) 48, 148, 244, 352, 397, 652
BspACI CCGC 4 cut(s) 5, 162, 278, 766
BspANI GGCC 2 cut(s) 26, 919
BspCNI CTCAG 4 cut(s) 604, 685, 829, 838
BspPI GGATC 2 cut(s) 239, 405
BspQI GCTCTTC 1 cut(s) 570
BspTI CTTAAG 1 cut(s) 1049
BsrBI CCGCTC 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 713
BsrGI TGTACA 1 cut(s) 1114
BssMI GATC 6 cut(s) 48, 148, 244, 352, 397, 652
Bst2UI CCWGG 2 cut(s) 573, 1037
Bst4CI ACNGT 4 cut(s) 362, 782, 801, 965
Bst6I CTCTTC 3 cut(s) 570, 609, 1052
BstAFI CTTAAG 1 cut(s) 1049
BstAUI TGTACA 1 cut(s) 1114
BstC8I GCNNGC 5 cut(s) 561, 660, 742, 768, 1015
BstDEI CTNAG 8 cut(s) 168, 249, 591, 663, 693, 771, 837, 846
BstF5I GGATG 2 cut(s) 835, 964
BstKTI GATC 6 cut(s) 51, 151, 247, 355, 400, 655
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 6 cut(s) 48, 148, 244, 352, 397, 652
BstMWI GCNNNNNNNGC 6 cut(s) 10, 13, 32, 173, 746, 767
BstNI CCWGG 2 cut(s) 573, 1037
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 571, 1035
BstV1I GCAGC 3 cut(s) 25, 151, 1077
BsuRI GGCC 2 cut(s) 26, 919
BtsCI GGATG 2 cut(s) 835, 964
BtsI GCAGTG 2 cut(s) 290, 498
BtsIMutI CAGTG 4 cut(s) 290, 367, 498, 970
Cac8I GCNNGC 5 cut(s) 561, 660, 742, 768, 1015
Cfr13I GGNCC 1 cut(s) 917
CseI GACGC 1 cut(s) 359
Csp6I GTAC 4 cut(s) 109, 230, 442, 1115
CviAII CATG 4 cut(s) 317, 560, 703, 955
CviQI GTAC 4 cut(s) 109, 230, 442, 1115
DdeI CTNAG 8 cut(s) 168, 249, 591, 663, 693, 771, 837, 846
DpnI GATC 6 cut(s) 50, 150, 246, 354, 399, 654
DpnII GATC 6 cut(s) 48, 148, 244, 352, 397, 652
Eam1104I CTCTTC 3 cut(s) 570, 609, 1052
EarI CTCTTC 3 cut(s) 570, 609, 1052
Eco24I GRGCYC 2 cut(s) 75, 141
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 1 cut(s) 1087
EcoRII CCWGG 2 cut(s) 571, 1035
EcoT38I GRGCYC 2 cut(s) 75, 141
FaeI CATG 4 cut(s) 320, 563, 706, 958
FatI CATG 4 cut(s) 316, 559, 702, 954
FauI CCCGC 2 cut(s) 271, 759
Fnu4HI GCNGC 4 cut(s) 5, 14, 165, 1066
FokI GGATG 2 cut(s) 842, 971
FriOI GRGCYC 2 cut(s) 75, 141
Fsp4HI GCNGC 4 cut(s) 5, 14, 165, 1066
FspBI CTAG 1 cut(s) 1043
GluI GCNGC 4 cut(s) 5, 14, 165, 1066
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 26, 919
HgaI GACGC 1 cut(s) 359
Hin1II CATG 4 cut(s) 320, 563, 706, 958
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 1015
HinfI GANTC 7 cut(s) 118, 425, 679, 688, 812, 869, 1097
HphI GGTGA 1 cut(s) 947
Hpy166II GTNNAC 4 cut(s) 221, 797, 1096, 1117
Hpy188I TCNGA 6 cut(s) 333, 585, 594, 811, 847, 874
Hpy188III TCNNGA 8 cut(s) 76, 103, 115, 401, 692, 794, 1030, 1087
Hpy8I GTNNAC 4 cut(s) 221, 797, 1096, 1117
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 6 cut(s) 16, 76, 166, 172, 859, 883
HpyCH4III ACNGT 4 cut(s) 362, 782, 801, 965
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 306, 706, 1079
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 13, 32, 173, 746, 767
HpyF3I CTNAG 8 cut(s) 168, 249, 591, 663, 693, 771, 837, 846
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 4 cut(s) 320, 563, 706, 958
Kzo9I GATC 6 cut(s) 48, 148, 244, 352, 397, 652
LguI GCTCTTC 1 cut(s) 570
Lsp1109I GCAGC 3 cut(s) 25, 151, 1077
LweI GCATC 4 cut(s) 727, 823, 851, 928
MaeI CTAG 1 cut(s) 1043
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 896
MalI GATC 6 cut(s) 50, 150, 246, 354, 399, 654
MbiI CCGCTC 1 cut(s) 766
MboI GATC 6 cut(s) 48, 148, 244, 352, 397, 652
MboII GAAGA 8 cut(s) 58, 557, 626, 662, 724, 727, 983, 1069
MhlI GDGCHC 2 cut(s) 75, 141
MluCI AATT 1 cut(s) 1025
MlyI GAGTC 5 cut(s) 112, 434, 673, 682, 1091
MmeI TCCRAC 2 cut(s) 588, 987
MseI TTAA 3 cut(s) 204, 998, 1050
MspA1I CMGCKG 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 1049
MspR9I CCNGG 2 cut(s) 573, 1037
MvaI CCWGG 2 cut(s) 573, 1037
MwoI GCNNNNNNNGC 6 cut(s) 10, 13, 32, 173, 746, 767
NdeII GATC 6 cut(s) 48, 148, 244, 352, 397, 652
NlaIII CATG 4 cut(s) 320, 563, 706, 958
NspI RCATGY 1 cut(s) 563
PaeI GCATGC 1 cut(s) 563
PciSI GCTCTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 812, 869
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 4 cut(s) 6, 15, 166, 1067
PleI GAGTC 5 cut(s) 112, 433, 673, 682, 1091
PpsI GAGTC 5 cut(s) 112, 433, 673, 682, 1091
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 571, 1035
PspGI CCWGG 2 cut(s) 571, 1035
PspPI GGNCC 1 cut(s) 917
RsaI GTAC 4 cut(s) 110, 231, 443, 1116
RsaNI GTAC 4 cut(s) 109, 230, 442, 1115
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 204, 998, 1050
SatI GCNGC 4 cut(s) 5, 14, 165, 1066
Sau3AI GATC 6 cut(s) 48, 148, 244, 352, 397, 652
Sau96I GGNCC 1 cut(s) 917
SchI GAGTC 5 cut(s) 112, 434, 673, 682, 1091
ScrFI CCNGG 2 cut(s) 573, 1037
SduI GDGCHC 2 cut(s) 75, 141
SfaNI GCATC 4 cut(s) 727, 823, 851, 928
SmlI CTYRAG 3 cut(s) 74, 122, 1049
SmoI CTYRAG 3 cut(s) 74, 122, 1049
SpeI ACTAGT 1 cut(s) 1042
SphI GCATGC 1 cut(s) 563
Sse9I AATT 1 cut(s) 1025
SsiI CCGC 4 cut(s) 5, 162, 278, 766
SspMI CTAG 1 cut(s) 1043
StyD4I CCNGG 2 cut(s) 571, 1035
TaaI ACNGT 4 cut(s) 362, 782, 801, 965
TaiI ACGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 20, 135, 677
TasI AATT 1 cut(s) 1025
TatI WGTACW 2 cut(s) 441, 1114
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 812, 869
Tru1I TTAA 3 cut(s) 204, 998, 1050
Tru9I TTAA 3 cut(s) 204, 998, 1050
TscAI CASTG 4 cut(s) 290, 367, 498, 970
TseI GCWGC 3 cut(s) 13, 164, 1065
TspDTI ATGAA 3 cut(s) 393, 611, 691
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 4 cut(s) 290, 367, 498, 970
Vha464I CTTAAG 1 cut(s) 1049
XapI RAATTY 1 cut(s) 1025
XceI RCATGY 1 cut(s) 563
XspI CTAG 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.