Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8470117.1

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1901

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8470117.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggtagaaaatttaaaaaagaaggaggaagagaaggcgaaggacaaggaactaaatgagttgtttaaggttgctatcagtcaaccaaaagtaccagttggtgttgatcctaagtctatattatgcgagttttataaagcggggcagtgtgctaaaggtttcaaatgcaagttctcacatgatttgaatgttcagaggaaaggagaaaagattgatctttacagtgataagcgtcaaaatgaaacaatggaggaatgggatcaagaaactttggagaaagttgtggagtcaaagagaaaagagtacaatataaacaagccaactgatattgtttgtaaatactttttggaagcagtggagaaaaaacaatatggttggttttgggtctgccccaatggtggtaaagattgccattacaggcatgctcttcctccaggatatattctgaaatctcagatgaaagctctgttggaggaagagactgaaaagatacctattgaggaggagattgaagatcagcgtgctaagttgaaaacttcgactccaatgactcctgagttgttcatgcaatggaagaagaaaaagatagcagaaagagatgctggcttggcttcaaaaatggcagagcgggctaagaatgaccgtatgagtggtcgtgaactgtttttgtcagattcaaccttatttgtggatgatgctgaggcatctgagaagtatcaaagagagaaggaatctgaagttgctgaaaagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

251

Amino Acids

29.3

Weight (kDa)

6.87

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	628
AciI	CCGC	2 cut(s)	140, 628
AclWI	GGATC	2 cut(s)	101, 267
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	2 cut(s)	93, 305
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	6 cut(s)	163, 187, 512, 532, 615, 678
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	1 cut(s)	464
AluI	AGCT	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	2 cut(s)	101, 267
ApoI	RAATTY	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	699
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	589, 685, 713
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	4 cut(s)	467, 546, 690, 699
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	515, 518
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	106, 214, 259, 514
BspACI	CCGC	2 cut(s)	140, 628
BspCNI	CTCAG	4 cut(s)	466, 547, 691, 700
BspPI	GGATC	2 cut(s)	101, 267
BspQI	GCTCTTC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	4 cut(s)	106, 214, 259, 514
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	224, 644, 663
Bst6I	CTCTTC	3 cut(s)	24, 432, 471
BstC8I	GCNNGC	4 cut(s)	423, 522, 604, 630
BstDEI	CTNAG	7 cut(s)	111, 453, 525, 555, 633, 699, 708
BstF5I	GGATG	1 cut(s)	697
BstKTI	GATC	4 cut(s)	109, 217, 262, 517
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	4 cut(s)	106, 214, 259, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 629
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	697
BtsI	GCAGTG	2 cut(s)	152, 360
BtsIMutI	CAGTG	3 cut(s)	152, 229, 360
Cac8I	GCNNGC	4 cut(s)	423, 522, 604, 630
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	92, 304
CviAII	CATG	3 cut(s)	179, 422, 565
CviJI	RGCY	5 cut(s)	319, 464, 606, 611, 632
CviKI_1	RGCY	5 cut(s)	319, 464, 606, 611, 632
CviQI	GTAC	2 cut(s)	92, 304
DdeI	CTNAG	7 cut(s)	111, 453, 525, 555, 633, 699, 708
DpnI	GATC	4 cut(s)	108, 216, 261, 516
DpnII	GATC	4 cut(s)	106, 214, 259, 514
DraI	TTTAAA	1 cut(s)	15
Eam1104I	CTCTTC	3 cut(s)	24, 432, 471
EarI	CTCTTC	3 cut(s)	24, 432, 471
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	3 cut(s)	182, 425, 568
FatI	CATG	3 cut(s)	178, 421, 564
FauI	CCCGC	2 cut(s)	133, 621
FokI	GGATG	1 cut(s)	704
GsuI	CTGGAG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	182, 425, 568
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	5 cut(s)	287, 541, 550, 674, 731
Hpy166II	GTNNAC	2 cut(s)	83, 659
Hpy188I	TCNGA	6 cut(s)	195, 447, 456, 673, 709, 736
Hpy188III	TCNNGA	3 cut(s)	263, 554, 656
Hpy8I	GTNNAC	2 cut(s)	83, 659
HpyAV	CCTTC	4 cut(s)	16, 28, 34, 721
HpyCH4III	ACNGT	3 cut(s)	224, 644, 663
HpyCH4V	TGCA	2 cut(s)	168, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 629
HpyF3I	CTNAG	7 cut(s)	111, 453, 525, 555, 633, 699, 708
Hsp92II	CATG	3 cut(s)	182, 425, 568
Kzo9I	GATC	4 cut(s)	106, 214, 259, 514
LguI	GCTCTTC	1 cut(s)	432
LpnPI	CCDG	6 cut(s)	108, 403, 420, 447, 567, 588
LweI	GCATC	3 cut(s)	589, 685, 713
MalI	GATC	4 cut(s)	108, 216, 261, 516
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	4 cut(s)	106, 214, 259, 514
MboII	GAAGA	6 cut(s)	41, 419, 488, 524, 586, 589
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	296, 535, 544
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	8 cut(s)	19, 189, 244, 441, 466, 493, 496, 694
MseI	TTAA	2 cut(s)	14, 66
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	608, 629
NdeII	GATC	4 cut(s)	106, 214, 259, 514
NlaIII	CATG	3 cut(s)	182, 425, 568
NspI	RCATGY	1 cut(s)	425
PaeI	GCATGC	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	674, 731
PfoI	TCCNGGA	1 cut(s)	433
PleI	GAGTC	3 cut(s)	295, 535, 544
PpsI	GAGTC	3 cut(s)	295, 535, 544
PsiI	TTATAA	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	93, 305
RsaNI	GTAC	2 cut(s)	92, 304
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	14, 66
Sau3AI	GATC	4 cut(s)	106, 214, 259, 514
SchI	GAGTC	3 cut(s)	296, 535, 544
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	5 cut(s)	72, 160, 466, 496, 683
SfaNI	GCATC	3 cut(s)	589, 685, 713
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	140, 628
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	3 cut(s)	224, 644, 663
TaqI	TCGA	1 cut(s)	539
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	674, 731
Tru1I	TTAA	2 cut(s)	14, 66
Tru9I	TTAA	2 cut(s)	14, 66
TscAI	CASTG	3 cut(s)	152, 229, 360
TspDTI	ATGAA	3 cut(s)	255, 473, 553
TspRI	CASTG	3 cut(s)	152, 229, 360
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.