RchiOBHm_Chr3g0468431

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002824
Physical Location & Seq
Forward (+)
14462324 .. 14466066
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43433

Sequence Viewer

Length: 1077 bp
ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCAAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAATAAGAGCAAGAATGTCCAGAAGTACGTCCAGACTCTCAAGCAGTCCGTCCAGCCCAAGCCTGATCTCTCCAAAACCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAGGCGAAGGACAAGGAACTAAATGAGTTGTTTAAGGTTGCTATCAGTCAACCAAAAGTACCAGTTGGTGTTGATCCTAAGTCTATATTATGCGAGTTTTATAAAGCGGGGCAGTGTGCTAAAGGTTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATCTTTACAGTGATAAGCGTCAAAATGAAACAATGGAGGAATGGGATCAAGAAACTTTGGAGAAAGTTGTGGAGTCAAAGAGAAAAGAGTACAATATAAACAAGCCAACTGATATTGTTTGTAAATACTTTTTGGAAGCAGTGGAGAAAAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTCCTCCAGGATATATTCTGAAATCTCAGATGAAAGCTCTGTTGGAGGAAGAGACTGAAAAGATACCTATTGAGGAGGAGATTGAAGATCAGCGTGCTAGGTTGAAAACTTCGACTCCAATGACTCCTGAGTTGTTCATGCAATGGAAGAAGAAAAAGATAGCAGAAAGAGATGCTGGCTTGGCTTCAAAAATGGCAGAGCGGGCTAAGAATGACTGTATGAGTGGTCGTGAACTGTTTTTGTCAGATTCAACCTTATTTGTGGATGATGCTGAGGCATCTGAGAAGTATCAAAGAGAGAAGGAATCTGAAGTTGCTGAAAAGAAGGTTAGTAACAATGCTAATGGAGGTGGGCCAAATGTTGCTGATGGTGATGCCAAAGCTACCAACATGGATGACAGTGTTGAAGATGACGACTTGGACATAAATGAGTTAAACGAGTTGGAAGCAAGCTTATCAAAGGTAACAATTCAAGAGCCAGGCACTAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

358

Amino Acids

40.71

Weight (kDa)

6.87

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 215 - 294 2.1e-18 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccBSI CCGCTC 1 cut(s) 784
AciI CCGC 4 cut(s) 5, 162, 296, 784
AclWI GGATC 2 cut(s) 257, 423
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 3 cut(s) 110, 249, 461
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 8 cut(s) 319, 343, 668, 688, 771, 834, 989, 1055
AhlI ACTAGT 1 cut(s) 1067
AjnI CCWGG 2 cut(s) 589, 1060
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 608, 640
AluBI AGCT 3 cut(s) 620, 965, 1035
AluI AGCT 3 cut(s) 620, 965, 1035
Alw26I GTCTC 1 cut(s) 629
AlwI GGATC 2 cut(s) 257, 423
AoxI GGCC 2 cut(s) 24, 935
ApeKI GCWGC 2 cut(s) 13, 164
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 1 cut(s) 935
AsuHPI GGTGA 1 cut(s) 965
BanII GRGCYC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 2 cut(s) 25, 151
BccI CCATC 1 cut(s) 944
BciT130I CCWGG 2 cut(s) 591, 1062
BcoDI GTCTC 1 cut(s) 629
BcuI ACTAGT 1 cut(s) 1067
BfaI CTAG 2 cut(s) 681, 1068
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 5, 14, 165
BlsI GCNGC 3 cut(s) 6, 15, 166
Bme1390I CCNGG 2 cut(s) 591, 1062
BmgT120I GGNCC 1 cut(s) 935
BmrFI CCNGG 2 cut(s) 591, 1062
BmsI GCATC 4 cut(s) 745, 841, 869, 946
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 855
BpuEI CTTGAG 2 cut(s) 59, 107
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 2 cut(s) 591, 1062
BseGI GGATG 2 cut(s) 853, 982
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 4 cut(s) 623, 702, 846, 855
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 671, 674
BseXI GCAGC 2 cut(s) 25, 151
BshFI GGCC 2 cut(s) 26, 937
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 629
BsnI GGCC 2 cut(s) 26, 937
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 6 cut(s) 48, 148, 262, 370, 415, 670
BspACI CCGC 4 cut(s) 5, 162, 296, 784
BspANI GGCC 2 cut(s) 26, 937
BspCNI CTCAG 4 cut(s) 622, 703, 847, 856
BspPI GGATC 2 cut(s) 257, 423
BspQI GCTCTTC 1 cut(s) 588
BsrBI CCGCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 731
BsrI ACTGG 1 cut(s) 251
BssMI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
Bst2UI CCWGG 2 cut(s) 591, 1062
Bst4CI ACNGT 4 cut(s) 380, 800, 819, 983
Bst6I CTCTTC 3 cut(s) 180, 588, 627
BstC8I GCNNGC 5 cut(s) 579, 678, 760, 786, 1033
BstDEI CTNAG 7 cut(s) 168, 267, 609, 711, 789, 855, 864
BstF5I GGATG 2 cut(s) 853, 982
BstKTI GATC 6 cut(s) 51, 151, 265, 373, 418, 673
BstMAI GTCTC 1 cut(s) 629
BstMBI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
BstMWI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 764, 785
BstNI CCWGG 2 cut(s) 591, 1062
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 589, 1060
BstV1I GCAGC 2 cut(s) 25, 151
BsuRI GGCC 2 cut(s) 26, 937
BtsCI GGATG 2 cut(s) 853, 982
BtsI GCAGTG 2 cut(s) 308, 516
BtsIMutI CAGTG 4 cut(s) 308, 385, 516, 988
Cac8I GCNNGC 5 cut(s) 579, 678, 760, 786, 1033
Cfr13I GGNCC 1 cut(s) 935
CseI GACGC 1 cut(s) 377
Csp6I GTAC 3 cut(s) 109, 248, 460
CviAII CATG 4 cut(s) 335, 578, 721, 973
CviQI GTAC 3 cut(s) 109, 248, 460
DdeI CTNAG 7 cut(s) 168, 267, 609, 711, 789, 855, 864
DpnI GATC 6 cut(s) 50, 150, 264, 372, 417, 672
DpnII GATC 6 cut(s) 48, 148, 262, 370, 415, 670
Eam1104I CTCTTC 3 cut(s) 180, 588, 627
EarI CTCTTC 3 cut(s) 180, 588, 627
Eco24I GRGCYC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 912
EcoRII CCWGG 2 cut(s) 589, 1060
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 4 cut(s) 338, 581, 724, 976
FatI CATG 4 cut(s) 334, 577, 720, 972
FauI CCCGC 2 cut(s) 289, 777
Fnu4HI GCNGC 3 cut(s) 5, 14, 165
FokI GGATG 2 cut(s) 860, 989
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 5, 14, 165
FspBI CTAG 2 cut(s) 681, 1068
GluI GCNGC 3 cut(s) 5, 14, 165
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 2 cut(s) 26, 937
HgaI GACGC 1 cut(s) 377
Hin1II CATG 4 cut(s) 338, 581, 724, 976
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 1033
HinfI GANTC 6 cut(s) 118, 443, 697, 706, 830, 887
HphI GGTGA 1 cut(s) 965
Hpy166II GTNNAC 2 cut(s) 239, 815
Hpy188I TCNGA 6 cut(s) 351, 603, 612, 829, 865, 892
Hpy188III TCNNGA 7 cut(s) 76, 103, 115, 419, 710, 812, 1055
Hpy8I GTNNAC 2 cut(s) 239, 815
HpyAV CCTTC 7 cut(s) 16, 76, 172, 184, 190, 877, 901
HpyCH4III ACNGT 4 cut(s) 380, 800, 819, 983
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 324, 724
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 764, 785
HpyF3I CTNAG 7 cut(s) 168, 267, 609, 711, 789, 855, 864
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 4 cut(s) 338, 581, 724, 976
Kzo9I GATC 6 cut(s) 48, 148, 262, 370, 415, 670
LguI GCTCTTC 1 cut(s) 588
Lsp1109I GCAGC 2 cut(s) 25, 151
LweI GCATC 4 cut(s) 745, 841, 869, 946
MaeI CTAG 2 cut(s) 681, 1068
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 914, 1045
MalI GATC 6 cut(s) 50, 150, 264, 372, 417, 672
MbiI CCGCTC 1 cut(s) 784
MboI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
MboII GAAGA 8 cut(s) 58, 197, 575, 644, 680, 742, 745, 1001
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 1050
MlyI GAGTC 4 cut(s) 112, 452, 691, 700
MmeI TCCRAC 2 cut(s) 606, 1005
MseI TTAA 3 cut(s) 222, 1016, 1075
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 591, 1062
MvaI CCWGG 2 cut(s) 591, 1062
MwoI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 764, 785
NdeII GATC 6 cut(s) 48, 148, 262, 370, 415, 670
NlaIII CATG 4 cut(s) 338, 581, 724, 976
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 830, 887
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 3 cut(s) 6, 15, 166
PleI GAGTC 4 cut(s) 112, 451, 691, 700
PpsI GAGTC 4 cut(s) 112, 451, 691, 700
PsiI TTATAA 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 589, 1060
PspGI CCWGG 2 cut(s) 589, 1060
PspPI GGNCC 1 cut(s) 935
RsaI GTAC 3 cut(s) 110, 249, 461
RsaNI GTAC 3 cut(s) 109, 248, 460
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 222, 1016, 1075
SatI GCNGC 3 cut(s) 5, 14, 165
Sau3AI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
Sau96I GGNCC 1 cut(s) 935
SchI GAGTC 4 cut(s) 112, 452, 691, 700
ScrFI CCNGG 2 cut(s) 591, 1062
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 4 cut(s) 745, 841, 869, 946
SmlI CTYRAG 2 cut(s) 74, 122
SmoI CTYRAG 2 cut(s) 74, 122
SpeI ACTAGT 1 cut(s) 1067
SphI GCATGC 1 cut(s) 581
Sse9I AATT 1 cut(s) 1050
SsiI CCGC 4 cut(s) 5, 162, 296, 784
SspMI CTAG 2 cut(s) 681, 1068
StyD4I CCNGG 2 cut(s) 589, 1060
TaaI ACNGT 4 cut(s) 380, 800, 819, 983
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 20, 695
TasI AATT 1 cut(s) 1050
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 830, 887
Tru1I TTAA 3 cut(s) 222, 1016, 1075
Tru9I TTAA 3 cut(s) 222, 1016, 1075
TscAI CASTG 4 cut(s) 308, 385, 516, 988
TseI GCWGC 2 cut(s) 13, 164
TspDTI ATGAA 3 cut(s) 411, 629, 709
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 4 cut(s) 308, 385, 516, 988
XceI RCATGY 1 cut(s) 581
XspI CTAG 2 cut(s) 681, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.