AT2G20280

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002824
Physical Location & Seq
Reverse (-)
8739740 .. 8742650
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20280.1

Sequence Viewer

Length: 1116 bp
ATGCCTCCAAAGCAACAACCAAAGGCTGATTTGGCGAAGAAGCAGAAACAAGTGGAAGACAAAACTTTCGGATTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTTCAGAGTCTCAAGCAATCTGTTCAGCCTAAACCCGATGCAACTAAAGCTGCAGCTAAGAAAAAGAAAGAGGAAGAGAAAGCGAGAGAACAGGAATTGAATGAGTTGTTCAAGGTAGCTATTAGTCAGCCCAAAGTTCCTGTAGGTGTGGATCCAAAGTCTATACTCTGTGAGTTTTTCAAGGCCGGGCAGTGTCAAAAGGGTTTCAAGTGCAAATTCTCTCATGATTTGAACATTCAAAGGAAGGGTGAGAAGATTGATATTTACAGTGATACGCGTGATGAAGATGGAGATATGGATGAGTGGGATCAAGAGACCCTTGAAAAGGTTGTTGAATCAAAGAAAAATGAATATAATCAGAATAAGCCAACAGATATCGTTTGCAAGTATTTTCTGGATGCTGTGGAAAAGAAACAGTATGGGTGGTTCTGGTCATGCCCCAATGGTGGCAAAGAGTGTCATTACAGACACGCGCTTCCTCCTGGATATGTCCTTAAATCTCAAATGAAAGCCCTCTTGGAAGAGGAGTCATCGAAGAAGCTGGCAGTTGAGGACGAAATCGAAAACGAGCGTGCAAAACTGCAAACCGCAACACAAATGACTCCTGCACTATTTATGGAATGGAAGAGGAAGAAAATTGCTGAGAGAGATGCCGGTTTGGCTGCTTCTCAAGCGGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCCAATGCAAGCTTGTTTGTGGATGATGCTGAGGCTTGTGAAGAATACGAGAGGGAAAGAGAGCAGGAAGAGACTGAACAAAAGGCAAAGAACAAAGAAGCAGAGGCAGGGACAAGCAAGAGTAGTGGTGATGCTGAACAGAGTTCGAAAGAAGTCAATGAAGAAGAAGAAGATGACGATGATGATGATGATGACCTAGACATGGATGAGCTGGATGAATTGGAAGCAAGCTTGTCGAAAACATCGATCCAGATTCGTGAGCCAAACGACGAAGGGTCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

371

Amino Acids

42.39

Weight (kDa)

4.96

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 217 - 300 2e-18 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 388, 584
AciI CCGC 2 cut(s) 699, 785
AclWI GGATC 4 cut(s) 257, 270, 426, 1072
AcsI RAATTY 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 436, 557, 1033
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 9 cut(s) 76, 211, 223, 292, 319, 343, 350, 434, 446
AhdI GACNNNNNGTC 1 cut(s) 1105
AjnI CCWGG 1 cut(s) 592
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
AluBI AGCT 9 cut(s) 161, 167, 230, 652, 794, 823, 843, 1042, 1062
AluI AGCT 9 cut(s) 161, 167, 230, 652, 794, 823, 843, 1042, 1062
Alw26I GTCTC 3 cut(s) 125, 419, 896
AlwI GGATC 4 cut(s) 257, 270, 426, 1072
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 3 cut(s) 161, 164, 773
ApoI RAATTY 1 cut(s) 326
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 1 cut(s) 586
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 371, 971
AsuII TTCGAA 1 cut(s) 977
BamHI GGATCC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 861
BbvI GCAGC 3 cut(s) 148, 176, 760
BccI CCATC 1 cut(s) 392
BcgI CGANNNNNNTGC 2 cut(s) 1047, 1081
BciT130I CCWGG 1 cut(s) 594
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 125, 419, 896
BfaI CTAG 1 cut(s) 1028
BfmI CTRYAG 2 cut(s) 162, 252
BglI GCCNNNNNGGC 1 cut(s) 770
BisI GCNGC 3 cut(s) 162, 165, 774
BlsI GCNGC 3 cut(s) 163, 166, 775
Bme1390I CCNGG 2 cut(s) 298, 594
BmeRI GACNNNNNGTC 1 cut(s) 1105
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 298, 594
BmsI GCATC 5 cut(s) 139, 499, 751, 847, 952
BpiI GAAGAC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 861
Bpu14I TTCGAA 1 cut(s) 977
BpuEI CTTGAG 2 cut(s) 107, 765
BpuMI CCSGG 1 cut(s) 298
Bsa29I ATCGAT 1 cut(s) 1076
BsaI GGTCTC 1 cut(s) 419
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 557, 1033
Bse118I RCCGGY 1 cut(s) 764
BseBI CCWGG 1 cut(s) 594
BseCI ATCGAT 1 cut(s) 1076
BseGI GGATG 5 cut(s) 415, 514, 859, 1042, 1051
BseLI CCNNNNNNNGG 3 cut(s) 436, 557, 1033
BseMII CTCAG 2 cut(s) 744, 852
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 3 cut(s) 148, 176, 760
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 2 cut(s) 388, 584
Bsh1285I CGRYCG 1 cut(s) 805
BshFI GGCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 1076
BsiEI CGRYCG 1 cut(s) 805
BsiSI CCGG 2 cut(s) 297, 765
BslFI GGGAC 1 cut(s) 955
BslI CCNNNNNNNGG 3 cut(s) 436, 557, 1033
BsmAI GTCTC 3 cut(s) 125, 419, 896
BsmFI GGGAC 1 cut(s) 955
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 977
Bsp143I GATC 3 cut(s) 262, 418, 1077
BspACI CCGC 2 cut(s) 699, 785
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 745, 853
BspDI ATCGAT 1 cut(s) 1076
BspFNI CGCG 2 cut(s) 388, 584
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 4 cut(s) 257, 270, 426, 1072
BspT104I TTCGAA 1 cut(s) 977
BspTNI GGTCTC 1 cut(s) 419
BsrFI RCCGGY 1 cut(s) 764
BssAI RCCGGY 1 cut(s) 764
BssMI GATC 3 cut(s) 262, 418, 1077
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 3 cut(s) 380, 528, 806
Bst6I CTCTTC 4 cut(s) 180, 627, 731, 894
BstBI TTCGAA 1 cut(s) 977
BstC8I GCNNGC 4 cut(s) 654, 684, 841, 1060
BstDEI CTNAG 4 cut(s) 168, 753, 795, 861
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 5 cut(s) 415, 514, 859, 1042, 1051
BstFNI CGCG 2 cut(s) 388, 584
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 3 cut(s) 265, 421, 1080
BstMAI GTCTC 3 cut(s) 125, 419, 896
BstMBI GATC 3 cut(s) 262, 418, 1077
BstMCI CGRYCG 1 cut(s) 805
BstMWI GCNNNNNNNGC 6 cut(s) 10, 32, 158, 770, 782, 791
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 2 cut(s) 296, 592
BstSFI CTRYAG 2 cut(s) 162, 252
BstUI CGCG 2 cut(s) 388, 584
BstV1I GCAGC 3 cut(s) 148, 176, 760
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
Bsu15I ATCGAT 1 cut(s) 1076
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 1076
BtsCI GGATG 5 cut(s) 415, 514, 859, 1042, 1051
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 308, 385
Cac8I GCNNGC 4 cut(s) 654, 684, 841, 1060
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 586
Cfr10I RCCGGY 1 cut(s) 764
ClaI ATCGAT 1 cut(s) 1076
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 3 cut(s) 335, 546, 1033
DdeI CTNAG 4 cut(s) 168, 753, 795, 861
DpnI GATC 3 cut(s) 264, 420, 1079
DpnII GATC 3 cut(s) 262, 418, 1077
DriI GACNNNNNGTC 1 cut(s) 1105
Eam1104I CTCTTC 4 cut(s) 180, 627, 731, 894
Eam1105I GACNNNNNGTC 1 cut(s) 1105
EarI CTCTTC 4 cut(s) 180, 627, 731, 894
Eco31I GGTCTC 1 cut(s) 419
Eco32I GATATC 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 592
EcoRV GATATC 1 cut(s) 487
FaeI CATG 3 cut(s) 338, 549, 1036
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 955
FatI CATG 3 cut(s) 334, 545, 1032
Fnu4HI GCNGC 3 cut(s) 162, 165, 774
FokI GGATG 5 cut(s) 422, 521, 866, 1049, 1058
Fsp4HI GCNGC 3 cut(s) 162, 165, 774
FspBI CTAG 1 cut(s) 1028
GlaI GCGC 1 cut(s) 585
GluI GCNGC 3 cut(s) 162, 165, 774
HaeIII GGCC 1 cut(s) 296
HapII CCGG 2 cut(s) 297, 765
HhaI GCGC 1 cut(s) 586
Hin1II CATG 3 cut(s) 338, 549, 1036
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HindIII AAGCTT 2 cut(s) 841, 1060
HinfI GANTC 5 cut(s) 118, 446, 638, 712, 1084
HpaII CCGG 2 cut(s) 297, 765
HphI GGTGA 2 cut(s) 371, 971
Hpy188I TCNGA 4 cut(s) 71, 105, 117, 471
Hpy188III TCNNGA 7 cut(s) 335, 422, 506, 818, 1081, 1088, 1113
Hpy99I CGWCG 1 cut(s) 1103
HpyAV CCTTC 2 cut(s) 349, 1097
HpyCH4III ACNGT 3 cut(s) 380, 528, 806
HpyCH4V TGCA 8 cut(s) 152, 164, 324, 495, 686, 694, 719, 839
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 32, 158, 770, 782, 791
HpyF3I CTNAG 4 cut(s) 168, 753, 795, 861
Hsp92II CATG 3 cut(s) 338, 549, 1036
HspAI GCGC 1 cut(s) 584
Kzo9I GATC 3 cut(s) 262, 418, 1077
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 3 cut(s) 148, 176, 760
LweI GCATC 5 cut(s) 139, 499, 751, 847, 952
MaeI CTAG 1 cut(s) 1028
MalI GATC 3 cut(s) 264, 420, 1079
MboI GATC 3 cut(s) 262, 418, 1077
MflI RGATCY 1 cut(s) 262
MluCI AATT 4 cut(s) 206, 326, 747, 1049
MluI ACGCGT 1 cut(s) 386
MlyI GAGTC 3 cut(s) 127, 647, 706
MseI TTAA 1 cut(s) 606
MspI CCGG 2 cut(s) 297, 765
MspR9I CCNGG 2 cut(s) 298, 594
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 2 cut(s) 388, 584
MwoI GCNNNNNNNGC 6 cut(s) 10, 32, 158, 770, 782, 791
NciI CCSGG 1 cut(s) 298
NdeII GATC 3 cut(s) 262, 418, 1077
NlaIII CATG 3 cut(s) 338, 549, 1036
NlaIV GGNNCC 1 cut(s) 264
NspV TTCGAA 1 cut(s) 977
PagI TCATGA 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 1073
PfeI GAWTC 2 cut(s) 446, 1084
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 3 cut(s) 163, 166, 775
PleI GAGTC 3 cut(s) 126, 646, 706
PpsI GAGTC 3 cut(s) 126, 646, 706
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 1 cut(s) 264
PsrI GAACNNNNNNTAC 2 cut(s) 521, 553
PstI CTGCAG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 262
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 3 cut(s) 162, 165, 774
Sau3AI GATC 3 cut(s) 262, 418, 1077
SchI GAGTC 3 cut(s) 127, 647, 706
ScrFI CCNGG 2 cut(s) 298, 594
SfaNI GCATC 5 cut(s) 139, 499, 751, 847, 952
SfcI CTRYAG 2 cut(s) 162, 252
SfuI TTCGAA 1 cut(s) 977
SmlI CTYRAG 2 cut(s) 122, 780
SmoI CTYRAG 2 cut(s) 122, 780
Sse9I AATT 4 cut(s) 206, 326, 747, 1049
SsiI CCGC 2 cut(s) 699, 785
SspMI CTAG 1 cut(s) 1028
StyD4I CCNGG 2 cut(s) 296, 592
TaaI ACNGT 3 cut(s) 380, 528, 806
TaqI TCGA 5 cut(s) 644, 672, 977, 1067, 1076
TasI AATT 4 cut(s) 206, 326, 747, 1049
TfiI GAWTC 2 cut(s) 446, 1084
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 2 cut(s) 308, 385
TseI GCWGC 3 cut(s) 161, 164, 773
TspDTI ATGAA 5 cut(s) 408, 474, 632, 1005, 1062
TspRI CASTG 2 cut(s) 308, 385
XagI CCTNNNNNAGG 1 cut(s) 434
XapI RAATTY 1 cut(s) 326
XspI CTAG 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.