Rroxscaffold_6G00412770

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002824
Physical Location & Seq
Reverse (-)
35275852 .. 35279887
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412770.1

Sequence Viewer

Length: 1086 bp
ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCAAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAATAAGAGCAAGAATGTCCAGAAGTACGTCCAGACTCTCAAGCAGTCCGTCCAGCCCAAGCCTGATCTCTCCAAAACCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAGGCGAAGGACAAGGAACTAAATGAGTTGTTTAAGGTTGCTATCAGTCAACCAAAAGTACCAGTTGGTGTTGATCCTAAGTCTATATTATGCGAGTTTTATAAAGCGGGGCAGTGTGCTAAAGGTTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATCTTTACAGTGATAAGCGTCAAAATGAAACAATGGAGGAATGGGATCAAGAAACTTTGGAGAAAGTTGTGGAGTCAAAGAGAAAAGAGTATAATATAAACAAACCAACTGATATTGTTTGTAAATACTTTTTGGAAGCAGTGGAGAAAAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTCCTCCAGGATATATTTTGAAGTCTCAGATGAAAGCTCTGTTGGAGGAAGAGACTGAAAAGATACCTATAGAGGAGGAGATTGAAGATCAGCGTGCCAAGTTGAAAACTTCAACTCCAATGACTCCTGAGTTGTTCATGCAATGGAAGAAGAAAAAGATAGCAGAAAGAGATGCTGGCTTGGCTTCAAAAATGGTAGAGCGGGCTAAGAATGACCGTATGAGTGGTCGTGAACTGTTTTTGTCAGATTCAACCTTATTTGTGGATGATGCTGAGGCATCTGAGAAGTATCAAAGAGATAAAGAATCTGAAGTTGCTGAAAAGAAGGTTAGTAACAATGCTAATGGAGGAGGGGCAAATAGCTCAGCAACAGCTGATGGTGATGCCAAAGCTACCAACGTCGATGATGATGTTGATGACGACGACTTGGACATAAATGAGTTAAACGAGTTGGAAGCAAGCTTATCAAAGGTAGCAATTCAAGAGCCAGGCACTAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

361

Amino Acids

40.93

Weight (kDa)

6.88

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 215 - 294 2.3e-18 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccBSI CCGCTC 1 cut(s) 784
AciI CCGC 4 cut(s) 5, 162, 296, 784
AclWI GGATC 2 cut(s) 257, 423
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 2 cut(s) 110, 249
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 9 cut(s) 319, 343, 604, 668, 688, 696, 771, 834, 1064
AhlI ACTAGT 1 cut(s) 1076
AjnI CCWGG 2 cut(s) 589, 1069
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 608, 640
AluBI AGCT 5 cut(s) 620, 945, 956, 974, 1044
AluI AGCT 5 cut(s) 620, 945, 956, 974, 1044
Alw26I GTCTC 2 cut(s) 612, 629
AlwI GGATC 2 cut(s) 257, 423
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 13, 164
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsuHPI GGTGA 1 cut(s) 974
BanII GRGCYC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 2 cut(s) 25, 151
BccI CCATC 1 cut(s) 953
BciT130I CCWGG 2 cut(s) 591, 1071
BcoDI GTCTC 2 cut(s) 612, 629
BcuI ACTAGT 1 cut(s) 1076
BfaI CTAG 1 cut(s) 1077
BfmI CTRYAG 1 cut(s) 651
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 5, 14, 165
BlpI GCTNAGC 1 cut(s) 946
BlsI GCNGC 3 cut(s) 6, 15, 166
Bme1390I CCNGG 2 cut(s) 591, 1071
BmrFI CCNGG 2 cut(s) 591, 1071
BmsI GCATC 4 cut(s) 745, 841, 869, 955
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 855
Bpu1102I GCTNAGC 1 cut(s) 946
BpuEI CTTGAG 2 cut(s) 59, 107
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 2 cut(s) 591, 1071
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 5 cut(s) 623, 702, 846, 855, 960
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 3 cut(s) 671, 674, 945
BseXI GCAGC 2 cut(s) 25, 151
BshFI GGCC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 2 cut(s) 612, 629
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 6 cut(s) 48, 148, 262, 370, 415, 670
Bsp1720I GCTNAGC 1 cut(s) 946
BspACI CCGC 4 cut(s) 5, 162, 296, 784
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 5 cut(s) 622, 703, 847, 856, 959
BspPI GGATC 2 cut(s) 257, 423
BspQI GCTCTTC 1 cut(s) 588
BsrBI CCGCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 731
BsrI ACTGG 1 cut(s) 251
BssMI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
Bst2UI CCWGG 2 cut(s) 591, 1071
Bst4CI ACNGT 3 cut(s) 380, 800, 819
Bst6I CTCTTC 3 cut(s) 180, 588, 627
BstC8I GCNNGC 5 cut(s) 579, 678, 760, 786, 1042
BstDEI CTNAG 8 cut(s) 168, 267, 609, 711, 789, 855, 864, 946
BstF5I GGATG 1 cut(s) 853
BstKTI GATC 6 cut(s) 51, 151, 265, 373, 418, 673
BstMAI GTCTC 2 cut(s) 612, 629
BstMBI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
BstMWI GCNNNNNNNGC 4 cut(s) 10, 13, 32, 764
BstNI CCWGG 2 cut(s) 591, 1071
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 589, 1069
BstSFI CTRYAG 1 cut(s) 651
BstV1I GCAGC 2 cut(s) 25, 151
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 853
BtsI GCAGTG 2 cut(s) 308, 516
BtsIMutI CAGTG 3 cut(s) 308, 385, 516
Cac8I GCNNGC 5 cut(s) 579, 678, 760, 786, 1042
CseI GACGC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 109, 248
CviAII CATG 3 cut(s) 335, 578, 721
CviQI GTAC 2 cut(s) 109, 248
DdeI CTNAG 8 cut(s) 168, 267, 609, 711, 789, 855, 864, 946
DpnI GATC 6 cut(s) 50, 150, 264, 372, 417, 672
DpnII GATC 6 cut(s) 48, 148, 262, 370, 415, 670
Eam1104I CTCTTC 3 cut(s) 180, 588, 627
EarI CTCTTC 3 cut(s) 180, 588, 627
Eco24I GRGCYC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 912
EcoRII CCWGG 2 cut(s) 589, 1069
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 3 cut(s) 338, 581, 724
FatI CATG 3 cut(s) 334, 577, 720
FauI CCCGC 2 cut(s) 289, 777
Fnu4HI GCNGC 3 cut(s) 5, 14, 165
FokI GGATG 1 cut(s) 860
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 3 cut(s) 5, 14, 165
FspBI CTAG 1 cut(s) 1077
GluI GCNGC 3 cut(s) 5, 14, 165
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 1 cut(s) 377
Hin1II CATG 3 cut(s) 338, 581, 724
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 5 cut(s) 118, 443, 706, 830, 887
HphI GGTGA 1 cut(s) 974
Hpy166II GTNNAC 2 cut(s) 239, 815
Hpy188I TCNGA 5 cut(s) 351, 612, 829, 865, 892
Hpy188III TCNNGA 7 cut(s) 76, 103, 115, 419, 710, 812, 1064
Hpy8I GTNNAC 2 cut(s) 239, 815
Hpy99I CGWCG 2 cut(s) 986, 1007
HpyAV CCTTC 6 cut(s) 16, 76, 172, 184, 190, 901
HpyCH4III ACNGT 3 cut(s) 380, 800, 819
HpyCH4IV ACGT 2 cut(s) 111, 981
HpyCH4V TGCA 2 cut(s) 324, 724
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 13, 32, 764
HpyF3I CTNAG 8 cut(s) 168, 267, 609, 711, 789, 855, 864, 946
HpySE526I ACGT 2 cut(s) 111, 981
Hsp92II CATG 3 cut(s) 338, 581, 724
Kzo9I GATC 6 cut(s) 48, 148, 262, 370, 415, 670
LguI GCTCTTC 1 cut(s) 588
Lsp1109I GCAGC 2 cut(s) 25, 151
LweI GCATC 4 cut(s) 745, 841, 869, 955
MaeI CTAG 1 cut(s) 1077
MaeII ACGT 2 cut(s) 111, 981
MaeIII GTNAC 1 cut(s) 914
MalI GATC 6 cut(s) 50, 150, 264, 372, 417, 672
MbiI CCGCTC 1 cut(s) 784
MboI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
MboII GAAGA 7 cut(s) 58, 197, 575, 644, 680, 742, 745
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 1059
MlyI GAGTC 3 cut(s) 112, 452, 700
MmeI TCCRAC 2 cut(s) 606, 1014
MseI TTAA 3 cut(s) 222, 1025, 1084
MspA1I CMGCKG 2 cut(s) 164, 956
MspR9I CCNGG 2 cut(s) 591, 1071
MvaI CCWGG 2 cut(s) 591, 1071
MwoI GCNNNNNNNGC 4 cut(s) 10, 13, 32, 764
NdeII GATC 6 cut(s) 48, 148, 262, 370, 415, 670
NlaIII CATG 3 cut(s) 338, 581, 724
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 830, 887
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 3 cut(s) 6, 15, 166
PleI GAGTC 3 cut(s) 112, 451, 700
PpsI GAGTC 3 cut(s) 112, 451, 700
PsiI TTATAA 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 589, 1069
PspGI CCWGG 2 cut(s) 589, 1069
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 2 cut(s) 110, 249
RsaNI GTAC 2 cut(s) 109, 248
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 222, 1025, 1084
SatI GCNGC 3 cut(s) 5, 14, 165
Sau3AI GATC 6 cut(s) 48, 148, 262, 370, 415, 670
SchI GAGTC 3 cut(s) 112, 452, 700
ScrFI CCNGG 2 cut(s) 591, 1071
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 4 cut(s) 745, 841, 869, 955
SfcI CTRYAG 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 74, 122
SmoI CTYRAG 2 cut(s) 74, 122
SpeI ACTAGT 1 cut(s) 1076
SphI GCATGC 1 cut(s) 581
Sse9I AATT 1 cut(s) 1059
SsiI CCGC 4 cut(s) 5, 162, 296, 784
SspMI CTAG 1 cut(s) 1077
StyD4I CCNGG 2 cut(s) 589, 1069
TaaI ACNGT 3 cut(s) 380, 800, 819
TaiI ACGT 2 cut(s) 114, 984
TaqI TCGA 2 cut(s) 20, 984
TasI AATT 1 cut(s) 1059
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 830, 887
Tru1I TTAA 3 cut(s) 222, 1025, 1084
Tru9I TTAA 3 cut(s) 222, 1025, 1084
TscAI CASTG 3 cut(s) 308, 385, 516
TseI GCWGC 2 cut(s) 13, 164
TspDTI ATGAA 3 cut(s) 411, 629, 709
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 3 cut(s) 308, 385, 516
XceI RCATGY 1 cut(s) 581
XspI CTAG 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.