FvH4_7g20460

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002824
Physical Location & Seq
Reverse (-)
16645392 .. 16650630
5239 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20460.t1

Sequence Viewer

Length: 1092 bp
ATGCCGCCAAAAGCATCGAAGGCCGACGTGGCCAAGAAGCAGAAGGTGGTGGAGGACAAGACCTTCGGGCTCAAGAACAAGAACAAGAGCAAGAGCGTCCAGAAGTACGTCCAGCAAATCAAGTCCTCAGTCCAGCCCAAAGTCGACCCTACCAAAGCCAAGAAAAAGAAGGAGGAGGATAAAGCGAAGGAGAAGGAGCTTAATGATTTGTTCAAGGTTGCGGTTAGTCAGCCGAAAGTGCCACCGGGTGTGGATCCCAAGTCGATTGTGTGCGAGTTTTTCAAGGCCGGGCAATGTACTAAGGGGTTCAAGTGCAAGTTTTCTCACGATTTGAATGTCCAGAGGAAGGGTGAAAAGATTGACATTTATAGTGATAAGCGTGACGACGAAACAATGGAGGAGTGGGATCAAGAGATGCTGGAGAAGGTTGTGGAGTCGAAGAAGAATGAGTATAATAATCAGAATAAGGCCACTGAGATTGTTTGCAAGTTCTTTTTGGAGGCAGTCGAAAAGAAACAGTATGGCTGGTTCTGGGTTTGTCCAAACGGTAACAAAGAGTGCCACTACAGACATGCTCTTCCTCCGGGCTATGTCTTGAAGTCTCAGATGAAGGCACTTCTTGAGGAAGAATCTGAAAAGATTGCCATTGAGGACGAGATTGAAAACCAGCGTTCTAAAGTAACAACATGTACTCCGATGACTACTGAGTTGTTCATGCAATGGAGGAATAAGAAGACAGAAGAGAAAGAAGCTGGCCTGGCTGCACAACGAGCAGATAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGTTGTTTCTTGCGGACGCAAGCTTGTTTGTGGATGATGCAGAAGCACATGAAAAATACCATAGACAAGAAGAACCTGAAGCTTCTGCAGAGAAGATCAAAGGCAACTCGGCAGCAGTGGGACCAAGTAGCTCTACTACTGCTGCTGGTTCTGAAGAAGTCCTAGTTGATGATGAAGATGAGGATGACGACGATGAGTTGGACTTGGATGAGCTAAATGAGCTTGAAGCAAGTTTGTCAAGAACATCAATCCAGATACGGGAACTGGGAATAGAGGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

364

Amino Acids

41.25

Weight (kDa)

5.32

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 213 - 292 3.1e-17 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AciI CCGC 4 cut(s) 5, 221, 793, 821
AclWI GGATC 3 cut(s) 248, 261, 414
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 2 cut(s) 906, 981
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 3 cut(s) 107, 298, 691
AfiI CCNNNNNNNGG 2 cut(s) 346, 1066
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 7 cut(s) 214, 283, 310, 334, 598, 662, 1034
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 7 cut(s) 199, 752, 831, 890, 939, 1021, 1030
AluI AGCT 7 cut(s) 199, 752, 831, 890, 939, 1021, 1030
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 3 cut(s) 248, 261, 414
AoxI GGCC 5 cut(s) 21, 30, 285, 468, 754
ApeKI GCWGC 3 cut(s) 761, 920, 950
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspS9I GGNCC 1 cut(s) 929
AsuC2I CCSGG 3 cut(s) 246, 289, 585
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 929
BalI TGGCCA 1 cut(s) 32
BamHI GGATCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 740
BbvI GCAGC 3 cut(s) 748, 932, 937
BciT130I CCWGG 1 cut(s) 758
BcnI CCSGG 3 cut(s) 246, 289, 585
BcoDI GTCTC 1 cut(s) 606
BfaI CTAG 1 cut(s) 971
BfmI CTRYAG 2 cut(s) 565, 894
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 5, 762, 921, 951
BlsI GCNGC 4 cut(s) 6, 763, 922, 952
Bme1390I CCNGG 4 cut(s) 246, 289, 585, 758
Bme18I GGWCC 1 cut(s) 929
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 929
BmiI GGNNCC 2 cut(s) 255, 930
BmrFI CCNGG 4 cut(s) 246, 289, 585, 758
BmrI ACTGGG 1 cut(s) 1082
BmsI GCATC 3 cut(s) 23, 405, 835
BmuI ACTGGG 1 cut(s) 1082
BpiI GAAGAC 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 440
BpuEI CTTGAG 2 cut(s) 56, 641
BpuMI CCSGG 3 cut(s) 246, 289, 585
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 1066
Bse1I ACTGG 1 cut(s) 1077
Bse3DI GCAATG 2 cut(s) 299, 725
BseBI CCWGG 1 cut(s) 758
BseGI GGATG 3 cut(s) 847, 997, 1021
BseLI CCNNNNNNNGG 2 cut(s) 346, 1066
BseMI GCAATG 2 cut(s) 299, 725
BseMII CTCAG 4 cut(s) 141, 465, 617, 696
BseNI ACTGG 1 cut(s) 1077
BseRI GAGGAG 2 cut(s) 188, 413
BseXI GCAGC 3 cut(s) 748, 932, 937
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 5 cut(s) 23, 32, 287, 470, 756
BsiSI CCGG 3 cut(s) 245, 288, 584
BslFI GGGAC 1 cut(s) 942
BslI CCNNNNNNNGG 2 cut(s) 346, 1066
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 942
BsnI GGCC 5 cut(s) 23, 32, 287, 470, 756
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 253, 406, 903
BspACI CCGC 4 cut(s) 5, 221, 793, 821
BspANI GGCC 5 cut(s) 23, 32, 287, 470, 756
BspCNI CTCAG 4 cut(s) 140, 466, 616, 697
BspLI GGNNCC 2 cut(s) 255, 930
BspMAI CTGCAG 1 cut(s) 898
BspPI GGATC 3 cut(s) 248, 261, 414
BspQI GCTCTTC 1 cut(s) 582
BsrDI GCAATG 2 cut(s) 299, 725
BsrI ACTGG 1 cut(s) 1077
BssMI GATC 3 cut(s) 253, 406, 903
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 2 cut(s) 519, 548
Bst6I CTCTTC 2 cut(s) 582, 735
BstC8I GCNNGC 2 cut(s) 754, 829
BstDEI CTNAG 6 cut(s) 127, 300, 474, 603, 705, 783
BstF5I GGATG 3 cut(s) 847, 997, 1021
BstKTI GATC 3 cut(s) 256, 409, 906
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 3 cut(s) 253, 406, 903
BstMWI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 758, 770, 779, 1027
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 2 cut(s) 575, 690
BstSCI CCNGG 4 cut(s) 244, 287, 583, 756
BstSFI CTRYAG 2 cut(s) 565, 894
BstV1I GCAGC 3 cut(s) 748, 932, 937
BstV2I GAAGAC 1 cut(s) 740
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 5 cut(s) 23, 32, 287, 470, 756
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 3 cut(s) 847, 997, 1021
BtsI GCAGTG 1 cut(s) 930
BtsIMutI CAGTG 2 cut(s) 471, 930
Cac8I GCNNGC 2 cut(s) 754, 829
Cfr13I GGNCC 1 cut(s) 929
CseI GACGC 2 cut(s) 85, 833
Csp6I GTAC 3 cut(s) 106, 297, 690
CspCI CAANNNNNGTGG 2 cut(s) 460, 495
CviAII CATG 5 cut(s) 572, 687, 715, 796, 857
CviQI GTAC 3 cut(s) 106, 297, 690
DdeI CTNAG 6 cut(s) 127, 300, 474, 603, 705, 783
DpnI GATC 3 cut(s) 255, 408, 905
DpnII GATC 3 cut(s) 253, 406, 903
DraIII CACNNNGTG 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 582, 735
EarI CTCTTC 2 cut(s) 582, 735
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 929
Eco57I CTGAAG 2 cut(s) 906, 981
EcoRII CCWGG 1 cut(s) 756
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 5 cut(s) 575, 690, 718, 799, 860
FaqI GGGAC 1 cut(s) 942
FatI CATG 5 cut(s) 571, 686, 714, 795, 856
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 5, 762, 921, 951
FokI GGATG 3 cut(s) 854, 1004, 1028
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 5, 762, 921, 951
FspBI CTAG 1 cut(s) 971
GluI GCNGC 4 cut(s) 5, 762, 921, 951
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 5 cut(s) 23, 32, 287, 470, 756
HapII CCGG 3 cut(s) 245, 288, 584
HgaI GACGC 2 cut(s) 85, 833
Hin1II CATG 5 cut(s) 575, 690, 718, 799, 860
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 2 cut(s) 829, 888
HinfI GANTC 2 cut(s) 434, 629
HpaII CCGG 3 cut(s) 245, 288, 584
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 5 cut(s) 462, 606, 634, 696, 961
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 3 cut(s) 29, 389, 1001
HpyAV CCTTC 9 cut(s) 13, 37, 73, 163, 181, 187, 340, 418, 604
HpyCH4III ACNGT 2 cut(s) 519, 548
HpyCH4IV ACGT 2 cut(s) 27, 108
HpyCH4V TGCA 6 cut(s) 315, 486, 718, 764, 848, 896
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 758, 770, 779, 1027
HpyF3I CTNAG 6 cut(s) 127, 300, 474, 603, 705, 783
HpySE526I ACGT 2 cut(s) 27, 108
Hsp92II CATG 5 cut(s) 575, 690, 718, 799, 860
Kzo9I GATC 3 cut(s) 253, 406, 903
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 3 cut(s) 748, 932, 937
LweI GCATC 3 cut(s) 23, 405, 835
MaeI CTAG 1 cut(s) 971
MaeII ACGT 2 cut(s) 27, 108
MaeIII GTNAC 3 cut(s) 380, 548, 679
MalI GATC 3 cut(s) 255, 408, 905
MboI GATC 3 cut(s) 253, 406, 903
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 987
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 3 cut(s) 245, 288, 584
MspR9I CCNGG 4 cut(s) 246, 289, 585, 758
MvaI CCWGG 1 cut(s) 758
MwoI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 758, 770, 779, 1027
NciI CCSGG 3 cut(s) 246, 289, 585
NdeII GATC 3 cut(s) 253, 406, 903
NlaIII CATG 5 cut(s) 575, 690, 718, 799, 860
NlaIV GGNNCC 2 cut(s) 255, 930
NmeAIII GCCGAG 1 cut(s) 896
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 2 cut(s) 575, 690
PciI ACATGT 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 629
PkrI GCNGC 4 cut(s) 6, 763, 922, 952
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PscI ACATGT 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 756
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 2 cut(s) 255, 930
PspPI GGNCC 1 cut(s) 929
PsrI GAACNNNNNNTAC 2 cut(s) 512, 544
PstI CTGCAG 1 cut(s) 898
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 3 cut(s) 107, 298, 691
RsaNI GTAC 3 cut(s) 106, 297, 690
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 4 cut(s) 5, 762, 921, 951
Sau3AI GATC 3 cut(s) 253, 406, 903
Sau96I GGNCC 1 cut(s) 929
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 4 cut(s) 246, 289, 585, 758
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 3 cut(s) 23, 405, 835
SfcI CTRYAG 2 cut(s) 565, 894
SfiI GGCCNNNNNGGCC 1 cut(s) 29
SinI GGWCC 1 cut(s) 929
SmlI CTYRAG 2 cut(s) 71, 620
SmoI CTYRAG 2 cut(s) 71, 620
SsiI CCGC 4 cut(s) 5, 221, 793, 821
SspMI CTAG 1 cut(s) 971
StyD4I CCNGG 4 cut(s) 244, 287, 583, 756
TaaI ACNGT 2 cut(s) 519, 548
TaiI ACGT 2 cut(s) 30, 111
TaqI TCGA 5 cut(s) 17, 144, 263, 437, 507
TatI WGTACW 2 cut(s) 296, 689
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 478, 930
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 3 cut(s) 761, 920, 950
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 4 cut(s) 623, 703, 873, 996
TspRI CASTG 2 cut(s) 478, 930
VpaK11BI GGWCC 1 cut(s) 929
XceI RCATGY 2 cut(s) 575, 690
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.