Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014003.1

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Forward (+)

48440 .. 55007

Gene Structure 6568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014003.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

atgccgccgaagcagcaatcgaaggccgatttggcaaagaagcagaagatcgtagaggacaagaccttcgggctcaagaacaagaataagagcaagaatgtccagaagtacgtccagactctcaagcagtccgtccagcccaagcctgatctctccaaaaccgctgctaagaaaaagaaggaggaagagaaggcgaaggacaaggaactaaatgagttgtttaaggttgctatcagtcaaccaaaagtaccagttggtgttgatcctaagtctatattatgcgagttttataaagcggggcagtgtgctaaaggtttcaaatgcaagttctcacatgatttgaatgttcagaggaaaggagaaaagattgatctttacagtgataagcgtcaaaatgaaacaatggaggaatgggatcaagaaactttggagaaagttgtggagtcaaagagaaaagagtacaatataaacaagccaactgatattgtttgtaaatactttttggaagcagtggagaaaaaacaatatggttggttttgggtctgccccaatggtggtaaagattgccattacaggcatgctcttcctccaggatatattctgaaatctcagatgaaagctctgttggaggaagagactgaaaagatacctattgaggaggagattgaagatcagcgtgctaagttgaaaacttcgactccaatgactcctgagttgttcatgcaatggaagaagaaaaagatagcagaaagagatgctggcttggcttcaaaaatggcagagcgggctaagaatgaccgtatgagtggtcgtgaactgtttttgtcagattcaaccttatttgtggatgatgctgaggcatctgagaagtatcaaagagagaaggaatctgaagttgctgaaaagaaggtttgtaacaatgctaatggaggtgggccacatgttgctgatggtgataccaaagctaccaacattgatgacagtgttgaagatgacgacttggacataaatgagttaaacgagttggaagcaagcttatcaaagaatcatgatactgatctttcttatattgtggatatggtcttgggcagtgaatcttacagcttcaccatgcagtccgcccttgagaatggggtcgttagacgtgcatcactagggcgtccagcaaagaacgaccaatcatcttcttctttgacttcggcgtcatcttctccagctcatcagacccagtcgtcctcatctcttgctcagaaccttccagatagattccggttttgtcctcagccaaaagtcacttactcagatcgatctccggcttcgtcttcagccaaagaccgccgacgctcctcttgcccagaccgggttcaccattgcttcactcagaccggcctcatctccccagactcccttcgtcttcctcctgtgccgacgatcagcctgtccagttggtcttcctcctgctccgcccgtctgcagttcctgatcaactcaaatcccgttcagatcgctccgccaacccagaccgccgttgccatccctcactcaagtcggccggattcttcaattggcagcccaagtccgaccaggtcgacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

531

Amino Acids

59.44

Weight (kDa)

8.62

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AasI	GACNNNNNNGTC	2 cut(s)	1201, 1231
AccBSI	CCGCTC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	1589
AciI	CCGC	9 cut(s)	5, 162, 296, 784, 1119, 1336, 1464, 1511, 1524
AclWI	GGATC	2 cut(s)	257, 423
AcoI	YGGCCR	1 cut(s)	1550
AcuI	CTGAAG	2 cut(s)	912, 1308
AcyI	GRCGYC	2 cut(s)	1159, 1202
AfaI	GTAC	3 cut(s)	110, 249, 461
AfiI	CCNNNNNNNGG	2 cut(s)	554, 1360
AflIII	ACRYGT	1 cut(s)	940
AgsI	TTSAA	8 cut(s)	319, 343, 668, 688, 771, 834, 989, 1563
AjiI	CACGTC	1 cut(s)	1145
AjnI	CCWGG	2 cut(s)	589, 1583
AjuI	GAANNNNNNNTTGG	4 cut(s)	14, 46, 608, 640
AluBI	AGCT	5 cut(s)	620, 965, 1035, 1104, 1217
AluI	AGCT	5 cut(s)	620, 965, 1035, 1104, 1217
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	2 cut(s)	257, 423
AlwNI	CAGNNNCTG	1 cut(s)	1480
AoxI	GGCC	4 cut(s)	24, 935, 1387, 1550
ApeKI	GCWGC	3 cut(s)	13, 164, 1569
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspS9I	GGNCC	1 cut(s)	935
AsuC2I	CCSGG	1 cut(s)	1361
AsuHPI	GGTGA	3 cut(s)	965, 1099, 1358
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	3 cut(s)	1314, 1406, 1443
BbvCI	CCTCAGC	2 cut(s)	855, 1281
BbvI	GCAGC	3 cut(s)	25, 151, 1581
BccI	CCATC	2 cut(s)	944, 1541
BceAI	ACGGC	1 cut(s)	1511
BciT130I	CCWGG	2 cut(s)	591, 1585
BclI	TGATCA	1 cut(s)	1482
BcnI	CCSGG	1 cut(s)	1361
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	1154
BfmI	CTRYAG	1 cut(s)	1472
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	4 cut(s)	5, 14, 165, 1570
BlsI	GCNGC	4 cut(s)	6, 15, 166, 1571
Bme1390I	CCNGG	3 cut(s)	591, 1361, 1585
BmgBI	CACGTC	1 cut(s)	1145
BmgT120I	GGNCC	1 cut(s)	935
BmrFI	CCNGG	3 cut(s)	591, 1361, 1585
BmrI	ACTGGG	1 cut(s)	1222
BmsI	GCATC	4 cut(s)	745, 841, 869, 1157
BmuI	ACTGGG	1 cut(s)	1222
BpiI	GAAGAC	3 cut(s)	1314, 1406, 1443
BpmI	CTGGAG	2 cut(s)	573, 1197
Bpu10I	CCTNAGC	2 cut(s)	855, 1281
BpuEI	CTTGAG	4 cut(s)	59, 107, 1145, 1528
BpuMI	CCSGG	1 cut(s)	1361
Bsa29I	ATCGAT	1 cut(s)	1306
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaHI	GRCGYC	2 cut(s)	1159, 1202
BsaWI	WCCGGW	1 cut(s)	1269
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 1360
Bse118I	RCCGGY	1 cut(s)	1385
Bse1I	ACTGG	3 cut(s)	251, 1228, 1443
Bse3DI	GCAATG	2 cut(s)	731, 1369
Bse8I	GATNNNNATC	1 cut(s)	1056
BseBI	CCWGG	2 cut(s)	591, 1585
BseCI	ATCGAT	1 cut(s)	1306
BseGI	GGATG	2 cut(s)	853, 1533
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	2 cut(s)	554, 1360
BseMI	GCAATG	2 cut(s)	731, 1369
BseMII	CTCAG	8 cut(s)	623, 702, 846, 855, 1262, 1295, 1314, 1394
BseNI	ACTGG	3 cut(s)	251, 1228, 1443
BseRI	GAGGAG	3 cut(s)	671, 674, 1336
BseX3I	CGGCCG	1 cut(s)	1550
BseXI	GCAGC	3 cut(s)	25, 151, 1581
Bsh1285I	CGRYCG	1 cut(s)	1553
BshFI	GGCC	4 cut(s)	26, 937, 1389, 1552
BshVI	ATCGAT	1 cut(s)	1306
BsiEI	CGRYCG	1 cut(s)	1553
BsiSI	CCGG	5 cut(s)	1270, 1313, 1360, 1386, 1553
BslI	CCNNNNNNNGG	2 cut(s)	554, 1360
BsmAI	GTCTC	1 cut(s)	629
BsnI	GGCC	4 cut(s)	26, 937, 1389, 1552
Bsp1286I	GDGCHC	1 cut(s)	75
BspACI	CCGC	9 cut(s)	5, 162, 296, 784, 1119, 1336, 1464, 1511, 1524
BspANI	GGCC	4 cut(s)	26, 937, 1389, 1552
BspCNI	CTCAG	8 cut(s)	622, 703, 847, 856, 1261, 1294, 1313, 1393
BspDI	ATCGAT	1 cut(s)	1306
BspHI	TCATGA	1 cut(s)	1048
BspMAI	CTGCAG	1 cut(s)	1476
BspPI	GGATC	2 cut(s)	257, 423
BspQI	GCTCTTC	1 cut(s)	588
BsrBI	CCGCTC	1 cut(s)	784
BsrDI	GCAATG	2 cut(s)	731, 1369
BsrFI	RCCGGY	1 cut(s)	1385
BsrI	ACTGG	3 cut(s)	251, 1228, 1443
BssAI	RCCGGY	1 cut(s)	1385
BssNI	GRCGYC	2 cut(s)	1159, 1202
Bst2UI	CCWGG	2 cut(s)	591, 1585
Bst4CI	ACNGT	4 cut(s)	380, 800, 819, 983
Bst6I	CTCTTC	3 cut(s)	180, 588, 627
BstACI	GRCGYC	2 cut(s)	1159, 1202
BstC8I	GCNNGC	5 cut(s)	579, 678, 760, 786, 1033
BstF5I	GGATG	2 cut(s)	853, 1533
BstMAI	GTCTC	1 cut(s)	629
BstMCI	CGRYCG	1 cut(s)	1553
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 13, 32, 764, 785, 1350
BstNI	CCWGG	2 cut(s)	591, 1585
BstNSI	RCATGY	2 cut(s)	581, 944
BstSCI	CCNGG	3 cut(s)	589, 1359, 1583
BstSFI	CTRYAG	1 cut(s)	1472
BstV1I	GCAGC	3 cut(s)	25, 151, 1581
BstV2I	GAAGAC	3 cut(s)	1314, 1406, 1443
BstZI	CGGCCG	1 cut(s)	1550
Bsu15I	ATCGAT	1 cut(s)	1306
BsuRI	GGCC	4 cut(s)	26, 937, 1389, 1552
BsuTUI	ATCGAT	1 cut(s)	1306
BtrI	CACGTC	1 cut(s)	1145
BtsCI	GGATG	2 cut(s)	853, 1533
BtsI	GCAGTG	3 cut(s)	308, 516, 1096
BtsIMutI	CAGTG	5 cut(s)	308, 385, 516, 988, 1096
Cac8I	GCNNGC	5 cut(s)	579, 678, 760, 786, 1033
CaiI	CAGNNNCTG	1 cut(s)	1480
CciI	TCATGA	1 cut(s)	1048
Cfr10I	RCCGGY	1 cut(s)	1385
Cfr13I	GGNCC	1 cut(s)	935
ClaI	ATCGAT	1 cut(s)	1306
CseI	GACGC	4 cut(s)	377, 1148, 1191, 1350
CsiI	ACCWGGT	1 cut(s)	1583
Csp6I	GTAC	3 cut(s)	109, 248, 460
CviAII	CATG	6 cut(s)	335, 578, 721, 941, 1049, 1111
CviQI	GTAC	3 cut(s)	109, 248, 460
DrdI	GACNNNNNNGTC	2 cut(s)	1201, 1231
DseDI	GACNNNNNNGTC	2 cut(s)	1201, 1231
EaeI	YGGCCR	1 cut(s)	1550
EagI	CGGCCG	1 cut(s)	1550
Eam1104I	CTCTTC	3 cut(s)	180, 588, 627
EarI	CTCTTC	3 cut(s)	180, 588, 627
EciI	GGCGGA	3 cut(s)	1108, 1453, 1500
EclXI	CGGCCG	1 cut(s)	1550
Eco24I	GRGCYC	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	1550
Eco57I	CTGAAG	2 cut(s)	912, 1308
EcoRII	CCWGG	2 cut(s)	589, 1583
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	6 cut(s)	338, 581, 724, 944, 1052, 1114
FatI	CATG	6 cut(s)	334, 577, 720, 940, 1048, 1110
FauI	CCCGC	2 cut(s)	289, 777
FbaI	TGATCA	1 cut(s)	1482
FblI	GTMKAC	1 cut(s)	1589
Fnu4HI	GCNGC	4 cut(s)	5, 14, 165, 1570
FokI	GGATG	2 cut(s)	860, 1520
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	4 cut(s)	5, 14, 165, 1570
FspBI	CTAG	1 cut(s)	1154
GluI	GCNGC	4 cut(s)	5, 14, 165, 1570
GsuI	CTGGAG	2 cut(s)	573, 1197
HaeIII	GGCC	4 cut(s)	26, 937, 1389, 1552
HapII	CCGG	5 cut(s)	1270, 1313, 1360, 1386, 1553
HgaI	GACGC	4 cut(s)	377, 1148, 1191, 1350
Hin1I	GRCGYC	2 cut(s)	1159, 1202
Hin1II	CATG	6 cut(s)	338, 581, 724, 944, 1052, 1114
HincII	GTYRAC	2 cut(s)	239, 1590
HindII	GTYRAC	2 cut(s)	239, 1590
HindIII	AAGCTT	1 cut(s)	1033
HpaII	CCGG	5 cut(s)	1270, 1313, 1360, 1386, 1553
HphI	GGTGA	3 cut(s)	965, 1099, 1358
Hpy166II	GTNNAC	4 cut(s)	239, 815, 1366, 1590
Hpy188III	TCNNGA	9 cut(s)	76, 103, 115, 419, 710, 812, 1049, 1259, 1480
Hpy8I	GTNNAC	4 cut(s)	239, 815, 1366, 1590
Hpy99I	CGWCG	2 cut(s)	1344, 1432
HpyAV	CCTTC	9 cut(s)	16, 76, 172, 184, 190, 877, 901, 1265, 1418
HpyCH4III	ACNGT	4 cut(s)	380, 800, 819, 983
HpyCH4IV	ACGT	2 cut(s)	111, 1144
HpyCH4V	TGCA	5 cut(s)	324, 724, 1114, 1148, 1474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 13, 32, 764, 785, 1350
HpySE526I	ACGT	2 cut(s)	111, 1144
Hsp92I	GRCGYC	2 cut(s)	1159, 1202
Hsp92II	CATG	6 cut(s)	338, 581, 724, 944, 1052, 1114
Ksp22I	TGATCA	1 cut(s)	1482
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	3 cut(s)	1349, 1466, 1513
Lsp1109I	GCAGC	3 cut(s)	25, 151, 1581
LweI	GCATC	4 cut(s)	745, 841, 869, 1157
MabI	ACCWGGT	1 cut(s)	1583
MaeI	CTAG	1 cut(s)	1154
MaeII	ACGT	2 cut(s)	111, 1144
MaeIII	GTNAC	2 cut(s)	914, 1291
MbiI	CCGCTC	1 cut(s)	784
MfeI	CAATTG	1 cut(s)	1563
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	1563
MlyI	GAGTC	5 cut(s)	112, 452, 691, 700, 1397
MmeI	TCCRAC	2 cut(s)	606, 1005
MseI	TTAA	2 cut(s)	222, 1016
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	5 cut(s)	1270, 1313, 1360, 1386, 1553
MspR9I	CCNGG	3 cut(s)	591, 1361, 1585
MunI	CAATTG	1 cut(s)	1563
MvaI	CCWGG	2 cut(s)	591, 1585
MwoI	GCNNNNNNNGC	6 cut(s)	10, 13, 32, 764, 785, 1350
NciI	CCSGG	1 cut(s)	1361
NlaIII	CATG	6 cut(s)	338, 581, 724, 944, 1052, 1114
NmuCI	GTSAC	1 cut(s)	1291
NspI	RCATGY	2 cut(s)	581, 944
PaeI	GCATGC	1 cut(s)	581
PagI	TCATGA	1 cut(s)	1048
PciI	ACATGT	1 cut(s)	940
PciSI	GCTCTTC	1 cut(s)	588
PfeI	GAWTC	6 cut(s)	830, 887, 1045, 1094, 1266, 1556
PflFI	GACNNNGTC	2 cut(s)	1228, 1585
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	4 cut(s)	6, 15, 166, 1571
PleI	GAGTC	5 cut(s)	112, 451, 691, 700, 1397
PpsI	GAGTC	5 cut(s)	112, 451, 691, 700, 1397
PscI	ACATGT	1 cut(s)	940
PsiI	TTATAA	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	589, 1583
PspGI	CCWGG	2 cut(s)	589, 1583
PspPI	GGNCC	1 cut(s)	935
PstI	CTGCAG	1 cut(s)	1476
PstNI	CAGNNNCTG	1 cut(s)	1480
PsyI	GACNNNGTC	2 cut(s)	1228, 1585
RsaI	GTAC	3 cut(s)	110, 249, 461
RsaNI	GTAC	3 cut(s)	109, 248, 460
SalI	GTCGAC	1 cut(s)	1588
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	222, 1016
SatI	GCNGC	4 cut(s)	5, 14, 165, 1570
Sau96I	GGNCC	1 cut(s)	935
SchI	GAGTC	5 cut(s)	112, 452, 691, 700, 1397
ScrFI	CCNGG	3 cut(s)	591, 1361, 1585
SduI	GDGCHC	1 cut(s)	75
SexAI	ACCWGGT	1 cut(s)	1583
SfaNI	GCATC	4 cut(s)	745, 841, 869, 1157
SfcI	CTRYAG	1 cut(s)	1472
SmlI	CTYRAG	4 cut(s)	74, 122, 1124, 1543
SmoI	CTYRAG	4 cut(s)	74, 122, 1124, 1543
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	1 cut(s)	1563
SsiI	CCGC	9 cut(s)	5, 162, 296, 784, 1119, 1336, 1464, 1511, 1524
SspMI	CTAG	1 cut(s)	1154
StyD4I	CCNGG	3 cut(s)	589, 1359, 1583
TaaI	ACNGT	4 cut(s)	380, 800, 819, 983
TaiI	ACGT	2 cut(s)	114, 1147
TaqI	TCGA	4 cut(s)	20, 695, 1306, 1589
TasI	AATT	1 cut(s)	1563
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	6 cut(s)	830, 887, 1045, 1094, 1266, 1556
Tru1I	TTAA	2 cut(s)	222, 1016
Tru9I	TTAA	2 cut(s)	222, 1016
TscAI	CASTG	5 cut(s)	308, 385, 516, 988, 1096
TseFI	GTSAC	1 cut(s)	1291
TseI	GCWGC	3 cut(s)	13, 164, 1569
Tsp45I	GTSAC	1 cut(s)	1291
TspDTI	ATGAA	3 cut(s)	411, 629, 709
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	5 cut(s)	308, 385, 516, 988, 1096
Tth111I	GACNNNGTC	2 cut(s)	1228, 1585
XceI	RCATGY	2 cut(s)	581, 944
XmiI	GTMKAC	1 cut(s)	1589
XspI	CTAG	1 cut(s)	1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.