MD07G1181600.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002824
Physical Location & Seq
Reverse (-)
26228400 .. 26234527
6128 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1181600.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGCCGCCAAAGGCATCGAAGGCCGACTTGGCGAAGAAGCAGAAGGTGGTGGAGGACAAGACCTTTGGGCTCAAGAACAAGAACAAGAGCAAGAATGTCCAGAAGTACGTCCAGAATCTCCAGCAGTCTGTCCAGCCCAAAGTAGACCCCACCAAGGCTAAGAAAAAGAAGGAGGAAGAGAAAGCAAAAGAGAAGGAGCTTAATGATTTGTTTAAGATTGCTGTTAGTCAGCCTAAAGTGCCACCTGGTGTTGATCCAAAGTCTATATTATGCGAGTTTTTCAAGGTTGGACAATGTACCAAGGGATTCAAGTGCAAGTTTTCGCATGACTTGAATGTCCAGAGGAAGGGTGAAAAGATTGATATTTACAGTGATAAACGTGATGATGAAGACACTATGGAGGATTGGGATCAAGCGACGTTGGAAAAGGTTGTGGAGTCAAAGAAGAATGAGTATAACCAGAATAAGCCCACCGAAATTGTTTGCAAACATTTCTTAGATGCAGTGGAAAAGAAGCAATATGGTTGGTTTTGGTCTTGTCCAAATGGTGGAAAAGAGTGCCACTACAGACATGCTCTTCCTCCTGGTTATGTTTTGAAATCTCAGATGAAGGCGCTTCTCGATGAAGAGGCTGAAAAAGTTGCCATTGAGGATGAAATTGAAAATCAGCGCGCAAAAGTAACAACCATTACTCCAATGACCACTGAGTTGTTCATGCAATGGAGGAATAAAAAGACTGAAGAGAAAGAGGCTGGCCTGGCTGCACAACGAGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGTTGTTTCTATCAGATGCTACCTTGTTTGTGGATGATGCTGAAGCGTATGAAAAATATCAAAGACAAGATCCTGAGGCCACTGAAGAGAAGGCCAAAGACAACTCAGCAGCAGGAGGGCCAAGCGCCTCGACTAGTGCTGCTGGTTCTGAAGTTCCCGTTAATGATGACATTGAAGATGATGATGATGATGATGAGTTGGACTTTGATGAGTTAAATGAACTCGAAGCAAGTTTGTCAAGAACATCCATTCAGATACGTGAGCCAGGTATAGAGGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

364

Amino Acids

41.19

Weight (kDa)

5.19

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 213 - 294 7.8e-17 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 548
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 672
AciI CCGC 2 cut(s) 5, 793
AclWI GGATC 3 cut(s) 248, 417, 872
AcuI CTGAAG 4 cut(s) 759, 870, 912, 978
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 2 cut(s) 107, 298
AfiI CCNNNNNNNGG 3 cut(s) 154, 346, 548
AgsI TTSAA 6 cut(s) 283, 310, 334, 598, 662, 983
AhlI ACTAGT 1 cut(s) 941
AjnI CCWGG 4 cut(s) 244, 583, 756, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
AlwI GGATC 3 cut(s) 248, 417, 872
AoxI GGCC 5 cut(s) 21, 754, 885, 900, 926
ApeKI GCWGC 3 cut(s) 761, 917, 947
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspLEI GCGC 4 cut(s) 616, 672, 674, 935
AspS9I GGNCC 1 cut(s) 926
AsuHPI GGTGA 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 882
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 748, 929, 934
BciT130I CCWGG 4 cut(s) 246, 585, 758, 1074
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 1 cut(s) 942
BfmI CTRYAG 1 cut(s) 565
BfoI RGCGCY 2 cut(s) 617, 936
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 5, 762, 918, 948
BlsI GCNGC 4 cut(s) 6, 763, 919, 949
Bme1390I CCNGG 4 cut(s) 246, 585, 758, 1074
BmgT120I GGNCC 1 cut(s) 926
BmrFI CCNGG 4 cut(s) 246, 585, 758, 1074
BmsI GCATC 4 cut(s) 23, 490, 814, 835
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 1067
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 153, 300
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 346, 548
Bse21I CCTNAGG 1 cut(s) 882
Bse3DI GCAATG 1 cut(s) 725
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 4 cut(s) 246, 585, 758, 1074
BseDI CCNNGG 2 cut(s) 153, 300
BseGI GGATG 3 cut(s) 658, 847, 1052
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 3 cut(s) 154, 346, 548
BseMI GCAATG 1 cut(s) 725
BseMII CTCAG 4 cut(s) 617, 696, 873, 927
BsePI GCGCGC 1 cut(s) 670
BseXI GCAGC 3 cut(s) 748, 929, 934
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 672
BshFI GGCC 5 cut(s) 23, 756, 887, 902, 928
BslI CCNNNNNNNGG 3 cut(s) 154, 346, 548
BsnI GGCC 5 cut(s) 23, 756, 887, 902, 928
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 253, 409, 877
BspACI CCGC 2 cut(s) 5, 793
BspANI GGCC 5 cut(s) 23, 756, 887, 902, 928
BspCNI CTCAG 4 cut(s) 616, 697, 874, 926
BspFNI CGCG 1 cut(s) 672
BspPI GGATC 3 cut(s) 248, 417, 872
BspQI GCTCTTC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 725
BssECI CCNNGG 2 cut(s) 153, 300
BssHII GCGCGC 1 cut(s) 670
BssMI GATC 3 cut(s) 253, 409, 877
BssT1I CCWWGG 2 cut(s) 153, 300
Bst2UI CCWGG 4 cut(s) 246, 585, 758, 1074
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 5 cut(s) 171, 582, 621, 735, 888
BstBAI YACGTR 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 672, 754
BstDEI CTNAG 7 cut(s) 159, 496, 603, 705, 783, 882, 913
BstF5I GGATG 3 cut(s) 658, 847, 1052
BstFNI CGCG 1 cut(s) 672
BstH2I RGCGCY 2 cut(s) 617, 936
BstHHI GCGC 4 cut(s) 616, 672, 674, 935
BstKTI GATC 3 cut(s) 256, 412, 880
BstMBI GATC 3 cut(s) 253, 409, 877
BstMWI GCNNNNNNNGC 6 cut(s) 20, 29, 238, 758, 770, 779
BstNI CCWGG 4 cut(s) 246, 585, 758, 1074
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 4 cut(s) 244, 583, 756, 1072
BstSFI CTRYAG 1 cut(s) 565
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 3 cut(s) 748, 929, 934
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
Bsu36I CCTNAGG 1 cut(s) 882
BsuRI GGCC 5 cut(s) 23, 756, 887, 902, 928
BtsCI GGATG 3 cut(s) 658, 847, 1052
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 4 cut(s) 376, 510, 702, 888
Cac8I GCNNGC 2 cut(s) 672, 754
CfoI GCGC 4 cut(s) 616, 672, 674, 935
Cfr13I GGNCC 1 cut(s) 926
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 2 cut(s) 106, 297
CspCI CAANNNNNGTGG 2 cut(s) 460, 495
CviAII CATG 4 cut(s) 326, 572, 715, 796
CviQI GTAC 2 cut(s) 106, 297
DdeI CTNAG 7 cut(s) 159, 496, 603, 705, 783, 882, 913
DpnI GATC 3 cut(s) 255, 411, 879
DpnII GATC 3 cut(s) 253, 409, 877
DraIII CACNNNGTG 1 cut(s) 248
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
Eam1104I CTCTTC 5 cut(s) 171, 582, 621, 735, 888
EarI CTCTTC 5 cut(s) 171, 582, 621, 735, 888
Eco130I CCWWGG 2 cut(s) 153, 300
Eco24I GRGCYC 1 cut(s) 72
Eco57I CTGAAG 4 cut(s) 759, 870, 912, 978
Eco81I CCTNAGG 1 cut(s) 882
EcoRII CCWGG 4 cut(s) 244, 583, 756, 1072
EcoT14I CCWWGG 2 cut(s) 153, 300
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 2 cut(s) 153, 300
FaeI CATG 4 cut(s) 329, 575, 718, 799
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 4 cut(s) 325, 571, 714, 795
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 5, 762, 918, 948
FokI GGATG 3 cut(s) 665, 854, 1039
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 5, 762, 918, 948
FspBI CTAG 1 cut(s) 942
GlaI GCGC 4 cut(s) 615, 671, 673, 934
GluI GCNGC 4 cut(s) 5, 762, 918, 948
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 2 cut(s) 617, 936
HaeIII GGCC 5 cut(s) 23, 756, 887, 902, 928
HhaI GCGC 4 cut(s) 616, 672, 674, 935
Hin1II CATG 4 cut(s) 329, 575, 718, 799
Hin6I GCGC 4 cut(s) 614, 670, 672, 933
HinP1I GCGC 4 cut(s) 614, 670, 672, 933
HinfI GANTC 3 cut(s) 115, 306, 437
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 606, 823, 958, 1062
Hpy188III TCNNGA 9 cut(s) 73, 100, 112, 340, 620, 806, 881, 1047, 1089
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 7 cut(s) 13, 37, 163, 187, 340, 604, 892
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4IV ACGT 4 cut(s) 108, 379, 419, 1066
HpyCH4V TGCA 5 cut(s) 315, 486, 503, 718, 764
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 29, 238, 758, 770, 779
HpyF3I CTNAG 7 cut(s) 159, 496, 603, 705, 783, 882, 913
HpySE526I ACGT 4 cut(s) 108, 379, 419, 1066
Hsp92II CATG 4 cut(s) 329, 575, 718, 799
HspAI GCGC 4 cut(s) 614, 670, 672, 933
Kzo9I GATC 3 cut(s) 253, 409, 877
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 3 cut(s) 748, 929, 934
LweI GCATC 4 cut(s) 23, 490, 814, 835
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 1 cut(s) 942
MaeII ACGT 4 cut(s) 108, 379, 419, 1066
MaeIII GTNAC 1 cut(s) 679
MalI GATC 3 cut(s) 255, 411, 879
MboI GATC 3 cut(s) 253, 409, 877
MboII GAAGA 9 cut(s) 46, 188, 401, 457, 569, 638, 752, 905, 995
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 2 cut(s) 477, 657
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 3 cut(s) 268, 402, 987
MseI TTAA 4 cut(s) 201, 213, 969, 1022
MspR9I CCNGG 4 cut(s) 246, 585, 758, 1074
MvaI CCWGG 4 cut(s) 246, 585, 758, 1074
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 6 cut(s) 20, 29, 238, 758, 770, 779
NdeII GATC 3 cut(s) 253, 409, 877
NlaIII CATG 4 cut(s) 329, 575, 718, 799
NspI RCATGY 1 cut(s) 575
PauI GCGCGC 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 115, 306
PflMI CCANNNNNTGG 1 cut(s) 548
PkrI GCNGC 4 cut(s) 6, 763, 919, 949
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 1067
Psp6I CCWGG 4 cut(s) 244, 583, 756, 1072
PspGI CCWGG 4 cut(s) 244, 583, 756, 1072
PspPI GGNCC 1 cut(s) 926
PsuI RGATCY 1 cut(s) 877
PteI GCGCGC 1 cut(s) 670
RsaI GTAC 2 cut(s) 107, 298
RsaNI GTAC 2 cut(s) 106, 297
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 4 cut(s) 201, 213, 969, 1022
SatI GCNGC 4 cut(s) 5, 762, 918, 948
Sau3AI GATC 3 cut(s) 253, 409, 877
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 4 cut(s) 246, 585, 758, 1074
SduI GDGCHC 1 cut(s) 72
SexAI ACCWGGT 1 cut(s) 244
SfaNI GCATC 4 cut(s) 23, 490, 814, 835
SfcI CTRYAG 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 941
Sse9I AATT 2 cut(s) 477, 657
SsiI CCGC 2 cut(s) 5, 793
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 4 cut(s) 244, 583, 756, 1072
StyI CCWWGG 2 cut(s) 153, 300
TaaI ACNGT 1 cut(s) 371
TaiI ACGT 4 cut(s) 111, 382, 422, 1069
TaqI TCGA 4 cut(s) 17, 621, 938, 1032
TasI AATT 2 cut(s) 477, 657
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 115, 306
Tru1I TTAA 4 cut(s) 201, 213, 969, 1022
Tru9I TTAA 4 cut(s) 201, 213, 969, 1022
TscAI CASTG 4 cut(s) 376, 510, 709, 895
TseI GCWGC 3 cut(s) 761, 917, 947
TspDTI ATGAA 7 cut(s) 402, 623, 639, 669, 703, 873, 1041
TspRI CASTG 4 cut(s) 376, 510, 709, 895
Van91I CCANNNNNTGG 1 cut(s) 548
XceI RCATGY 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.