Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Reverse (-)

14903350 .. 14906373

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCGAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAACAAGAGCAAGAACGTGCAGAAGTATGTTCAGAGCCTCAAGCAATCCGTCGAGCCAAAAGCCGATCCTTCCAAGACTGCCGTTAAGAAGAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAGCTGAATGAATTATTTAAGGTTGCTATTAGTCAACCGAAAGTACCAGTTGGTGTTGATCCCAAGTCTATACTATGTGAGTTCTATAAGGCAGGGCAGTGCGCAAAAGGTTTCAAGTGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAGGGAGAAAAGATTGACATTTACAGTGATAAGCGTGATAATGAAGAAACAATGGAGGGCTGGGATCAAGAAACTTTGGAGAAGGTCGTGGAGTCAAAAAAAAATGAGTACAAGCAGAACAAACCAACTGATATTGTCTGTAAATACTTTTTAGAAGCAGTGGAGAAGAAACAATATGGTTGGTTTTGGGCATGTCCCAATGGTGGTAAAAATTGCCATTACAGGCATGCTCTTCCTCCAGGATATGTTTTGAAGTCTCAGATGAAGGCTCTGTTAGAGGAAGAGAGTGAAAAGATACCCATTGAAGAGGAGATTGAAAATCAGCGTGCTAAATTGACAACTTCAACTCCTATGACTCCTGAGTTGTTCATGCAATGGAGGAAGAAAAAGATCGCAGAAAGAGATGCTGGCTTGGCTGTGCAAATGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGCCGTGAACTATTTTTGTCAGATTCTAGCTTATTTGTGGATGATGCCGAGGCACACGGGAATTACCAAAGAGAGCAAGAACCTGCAGTTTCCGAAAAGAAGGCCATCGAAAGCTCTAATGGACATGGACCAAGCAACCCAGCAACAGCTGGCGGTGATGCTGAAGTAACCAATTTCAATGATGACGACGAACTGGACATAGATGAGTTGAACGAGTTGGAAGCAAGCTTAGCGAAGGTAACAATTCAAGAACCGGGTGCTCGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

360

Amino Acids

40.66

Weight (kDa)

6.6

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	901
AciI	CCGC	3 cut(s)	5, 802, 963
AclWI	GGATC	3 cut(s)	143, 257, 426
AcoI	YGGCCR	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	993
AfaI	GTAC	2 cut(s)	249, 464
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	9 cut(s)	319, 343, 607, 659, 671, 699, 988, 1021, 1058
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	5 cut(s)	208, 840, 924, 959, 1038
AluI	AGCT	5 cut(s)	208, 840, 924, 959, 1038
Alw21I	GWGCWC	1 cut(s)	1072
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	3 cut(s)	143, 257, 426
AoxI	GGCC	4 cut(s)	24, 192, 811, 912
ApeKI	GCWGC	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	938
AsuC2I	CCSGG	1 cut(s)	1065
AsuHPI	GGTGA	1 cut(s)	977
AvaII	GGWCC	1 cut(s)	938
BanII	GRGCYC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	1071
Bbv12I	GWGCWC	1 cut(s)	1072
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	2 cut(s)	149, 798
BciT130I	CCWGG	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	1065
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	1 cut(s)	894
BfuAI	ACCTGC	1 cut(s)	901
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	5, 14
BlpI	GCTNAGC	1 cut(s)	1039
BlsI	GCNGC	2 cut(s)	6, 15
Bme1390I	CCNGG	2 cut(s)	594, 1065
Bme18I	GGWCC	1 cut(s)	938
BmgT120I	GGNCC	1 cut(s)	938
BmrFI	CCNGG	2 cut(s)	594, 1065
BmsI	GCATC	3 cut(s)	748, 844, 958
BpmI	CTGGAG	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	1039
BpuEI	CTTGAG	2 cut(s)	59, 107
BpuMI	CCSGG	1 cut(s)	1065
BsaJI	CCNNGG	2 cut(s)	195, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	685, 715
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	251, 1008
Bse3DI	GCAATG	1 cut(s)	734
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	195, 858
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	2 cut(s)	626, 705
BseNI	ACTGG	2 cut(s)	251, 1008
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	2 cut(s)	414, 949
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	4 cut(s)	26, 194, 813, 914
BsiHKAI	GWGCWC	1 cut(s)	1072
BsiSI	CCGG	1 cut(s)	1064
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	4 cut(s)	26, 194, 813, 914
Bsp1286I	GDGCHC	2 cut(s)	75, 1072
Bsp143I	GATC	5 cut(s)	48, 148, 262, 418, 744
Bsp1720I	GCTNAGC	1 cut(s)	1039
BspACI	CCGC	3 cut(s)	5, 802, 963
BspANI	GGCC	4 cut(s)	26, 194, 813, 914
BspCNI	CTCAG	2 cut(s)	625, 706
BspMAI	CTGCAG	1 cut(s)	898
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	3 cut(s)	143, 257, 426
BspQI	GCTCTTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	734
BsrI	ACTGG	2 cut(s)	251, 1008
BssECI	CCNNGG	2 cut(s)	195, 858
BssMI	GATC	5 cut(s)	48, 148, 262, 418, 744
BssSI	CACGAG	1 cut(s)	1071
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	1071
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	4 cut(s)	180, 591, 630, 654
BstC8I	GCNNGC	5 cut(s)	582, 681, 763, 961, 1036
BstDEI	CTNAG	5 cut(s)	612, 714, 792, 1039, 1077
BstF5I	GGATG	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	5 cut(s)	51, 151, 265, 421, 747
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	5 cut(s)	48, 148, 262, 418, 744
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 13, 32, 767, 788, 810, 1040
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	2 cut(s)	549, 584
BstSCI	CCNGG	2 cut(s)	592, 1063
BstSFI	CTRYAG	1 cut(s)	894
BstV1I	GCAGC	1 cut(s)	25
BsuRI	GGCC	4 cut(s)	26, 194, 813, 914
BtsCI	GGATG	1 cut(s)	856
BtsI	GCAGTG	2 cut(s)	308, 519
BtsIMutI	CAGTG	3 cut(s)	308, 385, 519
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	5 cut(s)	582, 681, 763, 961, 1036
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	938
Csp6I	GTAC	2 cut(s)	248, 463
CviAII	CATG	6 cut(s)	335, 546, 581, 724, 805, 935
CviQI	GTAC	2 cut(s)	248, 463
DdeI	CTNAG	5 cut(s)	612, 714, 792, 1039, 1077
DpnI	GATC	5 cut(s)	50, 150, 264, 420, 746
DpnII	GATC	5 cut(s)	48, 148, 262, 418, 744
EaeI	YGGCCR	1 cut(s)	811
Eam1104I	CTCTTC	4 cut(s)	180, 591, 630, 654
EarI	CTCTTC	4 cut(s)	180, 591, 630, 654
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	938
Eco57I	CTGAAG	1 cut(s)	993
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	6 cut(s)	338, 549, 584, 727, 808, 938
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	6 cut(s)	334, 545, 580, 723, 804, 934
Fnu4HI	GCNGC	2 cut(s)	5, 14
FokI	GGATG	1 cut(s)	863
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	5, 14
FspBI	CTAG	1 cut(s)	837
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	5, 14
GsaI	CCCAGC	2 cut(s)	418, 953
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	4 cut(s)	26, 194, 813, 914
HapII	CCGG	1 cut(s)	1064
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	6 cut(s)	338, 549, 584, 727, 808, 938
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	1036
HinfI	GANTC	3 cut(s)	446, 709, 833
HpaII	CCGG	1 cut(s)	1064
HphI	GGTGA	1 cut(s)	977
Hpy166II	GTNNAC	2 cut(s)	239, 818
Hpy188I	TCNGA	5 cut(s)	117, 351, 615, 832, 904
Hpy188III	TCNNGA	4 cut(s)	76, 422, 713, 1058
Hpy8I	GTNNAC	2 cut(s)	239, 818
Hpy99I	CGWCG	2 cut(s)	137, 1001
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	103, 324, 727, 775, 896
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 13, 32, 767, 788, 810, 1040
HpyF3I	CTNAG	5 cut(s)	612, 714, 792, 1039, 1077
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	338, 549, 584, 727, 808, 938
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	5 cut(s)	48, 148, 262, 418, 744
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	3 cut(s)	748, 844, 958
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	976, 1048
MalI	GATC	5 cut(s)	50, 150, 264, 420, 746
MboI	GATC	5 cut(s)	48, 148, 262, 418, 744
MhlI	GDGCHC	2 cut(s)	75, 1072
MluCI	AATT	6 cut(s)	215, 565, 686, 871, 982, 1053
MlyI	GAGTC	2 cut(s)	455, 703
MmeI	TCCRAC	1 cut(s)	1008
MseI	TTAA	2 cut(s)	168, 222
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	1 cut(s)	1064
MspR9I	CCNGG	2 cut(s)	594, 1065
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	7 cut(s)	10, 13, 32, 767, 788, 810, 1040
NciI	CCSGG	1 cut(s)	1065
NdeII	GATC	5 cut(s)	48, 148, 262, 418, 744
NlaIII	CATG	6 cut(s)	338, 549, 584, 727, 808, 938
NmeAIII	GCCGAG	1 cut(s)	883
NsbI	TGCGCA	1 cut(s)	307
NspI	RCATGY	2 cut(s)	549, 584
PaeI	GCATGC	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	833
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	6, 15
PleI	GAGTC	2 cut(s)	454, 703
PpsI	GAGTC	2 cut(s)	454, 703
Psp6I	CCWGG	1 cut(s)	592
PspFI	CCCAGC	2 cut(s)	414, 949
PspGI	CCWGG	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	898
PvuII	CAGCTG	1 cut(s)	959
RsaI	GTAC	2 cut(s)	249, 464
RsaNI	GTAC	2 cut(s)	248, 463
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	168, 222
SatI	GCNGC	2 cut(s)	5, 14
Sau3AI	GATC	5 cut(s)	48, 148, 262, 418, 744
Sau96I	GGNCC	1 cut(s)	938
SchI	GAGTC	2 cut(s)	455, 703
ScrFI	CCNGG	2 cut(s)	594, 1065
SduI	GDGCHC	2 cut(s)	75, 1072
SfaNI	GCATC	3 cut(s)	748, 844, 958
SfcI	CTRYAG	1 cut(s)	894
SinI	GGWCC	1 cut(s)	938
SmlI	CTYRAG	2 cut(s)	74, 122
SmoI	CTYRAG	2 cut(s)	74, 122
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	6 cut(s)	215, 565, 686, 871, 982, 1053
SsiI	CCGC	3 cut(s)	5, 802, 963
SspMI	CTAG	1 cut(s)	837
StyD4I	CCNGG	2 cut(s)	592, 1063
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	20, 135, 918
TasI	AATT	6 cut(s)	215, 565, 686, 871, 982, 1053
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	833
Tru1I	TTAA	2 cut(s)	168, 222
Tru9I	TTAA	2 cut(s)	168, 222
TscAI	CASTG	3 cut(s)	308, 385, 519
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	4 cut(s)	228, 411, 632, 712
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	3 cut(s)	308, 385, 519
VpaK11BI	GGWCC	1 cut(s)	938
XceI	RCATGY	2 cut(s)	549, 584
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.