RchiOBHm_Chr1g0364371

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002824
Physical Location & Seq
Forward (+)
55572561 .. 55578422
5862 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58906

Sequence Viewer

Length: 1086 bp
ATGCCGCCAAAGGCATCGAAGGCCGACGTGGCCAAGAAGCAGAAGGTGGTGGAGGACAAGACCTTCGGCCTGAAGAACAAGAACAAGAGCAAGAGTGTCCAGAAGTACGTCCAGCAAATCAAGTCGTCAGTCCAGCCCAAAGTCGACCCTACCAAAGCTAAGAAAAAGAAGGAGGAAGAGAAAGCCAAAGAGAAGGAGCTTAATGATTTGTTCAAGGTTGCTGTTAGTCAGCCAAAAGTGCCACCGGGTGTGGATCCCAAGTCCATTGTGTGCGAGTTTTTCAAGGCCGGGCAGTGTACTAAAGGATTCAAGTGCAAGTTTTCTCATGATTTGAATGTCCAGAGGAAGGGTGAAAAGATTGACATTTACAGTGATAAGCGCGACGATGAAACAATGGAGGAGTGGGATCAAGAGATGTTGGAAAAGGTTGTGGAGTCAAAGAAGAATGAGTATAACCAGAATAAGCCCACTGAGATTGTTTGCAAGTTCTTCTTGGAGGCAGTCGAAAAGAAACAGTATGGTTGGTTCTGGGTTTGTCCAAACGGTAGCAAAGAGTGCCACTACCGACATGCTCTTCCTCCGGGCTATATTTTGAAGTCTCAGATGAAGGCACTTCTTGAGGAAGAATCTCACAAGATTGCCATTGAGGACGAGATTGAAAACCAGCGTGCTAAAGTAACAACATGTACTCCGATGACTACTGAGTTGTTCATGCAATGGAGGAATAAGAAGACAGAAGAGAAAGAAGCTGGCCTGGCTGCACAACGAGCAGATAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGTTGTTTCTTGCGGATGCAAGCTTGTTTGTGGATGATGCTGAAGCATATGAAAAATACCAAAGACAAGAAGAACCTGAAGCATCTGAAGAGAAGATCAAAGGCAACTCTGCAGCAGTGGGACCAAGTAGCTCTACTAGTGCTGCTGGTTCTGAAGAAGTCCCTGTTGATGATGATGAGGATGACGATGATGAGTTGGACTTGGATGAGTTAAATGAACTCGAAGCAAGTTTGTCAAGAACATCGATTCAGATACGGGAACCGGGAATAGAGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

361

Amino Acids

41.06

Weight (kDa)

5.32

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 212 - 291 2.8e-17 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 381
AciI CCGC 3 cut(s) 5, 790, 818
AclWI GGATC 3 cut(s) 248, 261, 414
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 5 cut(s) 92, 867, 903, 912, 978
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 3 cut(s) 107, 298, 688
AfiI CCNNNNNNNGG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 683
AgsI TTSAA 6 cut(s) 214, 283, 310, 334, 595, 659
AhlI ACTAGT 1 cut(s) 941
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 753
AluBI AGCT 5 cut(s) 158, 199, 749, 828, 936
AluI AGCT 5 cut(s) 158, 199, 749, 828, 936
Alw26I GTCTC 1 cut(s) 603
AlwI GGATC 3 cut(s) 248, 261, 414
AoxI GGCC 5 cut(s) 21, 30, 67, 285, 751
ApeKI GCWGC 3 cut(s) 758, 917, 947
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 926
AsuC2I CCSGG 4 cut(s) 246, 289, 582, 1068
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 926
BalI TGGCCA 1 cut(s) 32
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 737
BbvI GCAGC 3 cut(s) 745, 929, 934
BciT130I CCWGG 1 cut(s) 755
BcnI CCSGG 4 cut(s) 246, 289, 582, 1068
BcoDI GTCTC 1 cut(s) 603
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 1 cut(s) 942
BfmI CTRYAG 1 cut(s) 915
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 4 cut(s) 5, 759, 918, 948
BlsI GCNGC 4 cut(s) 6, 760, 919, 949
Bme1390I CCNGG 5 cut(s) 246, 289, 582, 755, 1068
Bme18I GGWCC 1 cut(s) 926
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 3 cut(s) 255, 927, 1065
BmrFI CCNGG 5 cut(s) 246, 289, 582, 755, 1068
BmsI GCATC 4 cut(s) 23, 811, 832, 896
BpiI GAAGAC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 4 cut(s) 246, 289, 582, 1068
Bsa29I ATCGAT 1 cut(s) 1049
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 722
BseBI CCWGG 1 cut(s) 755
BseCI ATCGAT 1 cut(s) 1049
BseGI GGATG 4 cut(s) 826, 844, 991, 1015
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 3 cut(s) 462, 614, 693
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 745, 929, 934
BsgI GTGCAG 1 cut(s) 744
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 5 cut(s) 23, 32, 69, 287, 753
BshVI ATCGAT 1 cut(s) 1049
BsiSI CCGG 4 cut(s) 245, 288, 581, 1067
BslFI GGGAC 2 cut(s) 939, 950
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 939, 950
BsnI GGCC 5 cut(s) 23, 32, 69, 287, 753
Bsp143I GATC 3 cut(s) 253, 406, 900
BspACI CCGC 3 cut(s) 5, 790, 818
BspANI GGCC 5 cut(s) 23, 32, 69, 287, 753
BspCNI CTCAG 3 cut(s) 463, 613, 694
BspDI ATCGAT 1 cut(s) 1049
BspFNI CGCG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 255, 927, 1065
BspMAI CTGCAG 1 cut(s) 919
BspPI GGATC 3 cut(s) 248, 261, 414
BspQI GCTCTTC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 722
BssMI GATC 3 cut(s) 253, 406, 900
Bst2UI CCWGG 1 cut(s) 755
Bst4CI ACNGT 3 cut(s) 371, 516, 545
Bst6I CTCTTC 4 cut(s) 171, 579, 732, 888
BstAPI GCANNNNNTGC 1 cut(s) 555
BstC8I GCNNGC 3 cut(s) 669, 751, 826
BstDEI CTNAG 5 cut(s) 159, 471, 600, 702, 780
BstF5I GGATG 4 cut(s) 826, 844, 991, 1015
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 256, 409, 903
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 3 cut(s) 253, 406, 900
BstMWI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 555, 755, 767, 776
BstNI CCWGG 1 cut(s) 755
BstNSI RCATGY 2 cut(s) 572, 687
BstSCI CCNGG 5 cut(s) 244, 287, 580, 753, 1066
BstSFI CTRYAG 1 cut(s) 915
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 745, 929, 934
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 1049
BsuRI GGCC 5 cut(s) 23, 32, 69, 287, 753
BsuTUI ATCGAT 1 cut(s) 1049
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 4 cut(s) 826, 844, 991, 1015
BtsI GCAGTG 2 cut(s) 299, 927
BtsIMutI CAGTG 4 cut(s) 299, 376, 468, 927
Cac8I GCNNGC 3 cut(s) 669, 751, 826
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 926
ClaI ATCGAT 1 cut(s) 1049
Csp6I GTAC 3 cut(s) 106, 297, 687
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 5 cut(s) 326, 569, 684, 712, 793
CviQI GTAC 3 cut(s) 106, 297, 687
DdeI CTNAG 5 cut(s) 159, 471, 600, 702, 780
DpnI GATC 3 cut(s) 255, 408, 902
DpnII GATC 3 cut(s) 253, 406, 900
DraIII CACNNNGTG 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 4 cut(s) 171, 579, 732, 888
EarI CTCTTC 4 cut(s) 171, 579, 732, 888
Eco47I GGWCC 1 cut(s) 926
Eco57I CTGAAG 5 cut(s) 92, 867, 903, 912, 978
EcoRII CCWGG 1 cut(s) 753
FaeI CATG 5 cut(s) 329, 572, 687, 715, 796
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 2 cut(s) 939, 950
FatI CATG 5 cut(s) 325, 568, 683, 711, 792
FauNDI CATATG 1 cut(s) 853
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 5, 759, 918, 948
FokI GGATG 4 cut(s) 833, 851, 998, 1022
Fsp4HI GCNGC 4 cut(s) 5, 759, 918, 948
FspBI CTAG 1 cut(s) 942
GlaI GCGC 1 cut(s) 380
GluI GCNGC 4 cut(s) 5, 759, 918, 948
HaeIII GGCC 5 cut(s) 23, 32, 69, 287, 753
HapII CCGG 4 cut(s) 245, 288, 581, 1067
HhaI GCGC 1 cut(s) 381
Hin1II CATG 5 cut(s) 329, 572, 687, 715, 796
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 4 cut(s) 306, 434, 626, 1051
HpaII CCGG 4 cut(s) 245, 288, 581, 1067
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 145, 297
Hpy188I TCNGA 5 cut(s) 603, 693, 892, 958, 1056
Hpy188III TCNNGA 8 cut(s) 100, 326, 340, 410, 617, 803, 1041, 1083
Hpy8I GTNNAC 2 cut(s) 145, 297
Hpy99I CGWCG 2 cut(s) 29, 386
HpyAV CCTTC 7 cut(s) 13, 37, 73, 163, 187, 340, 601
HpyCH4III ACNGT 3 cut(s) 371, 516, 545
HpyCH4IV ACGT 2 cut(s) 27, 108
HpyCH4V TGCA 6 cut(s) 315, 483, 715, 761, 824, 917
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 555, 755, 767, 776
HpyF3I CTNAG 5 cut(s) 159, 471, 600, 702, 780
HpySE526I ACGT 2 cut(s) 27, 108
Hsp92II CATG 5 cut(s) 329, 572, 687, 715, 796
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 253, 406, 900
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 3 cut(s) 745, 929, 934
LweI GCATC 4 cut(s) 23, 811, 832, 896
MaeI CTAG 1 cut(s) 942
MaeII ACGT 2 cut(s) 27, 108
MaeIII GTNAC 1 cut(s) 676
MalI GATC 3 cut(s) 255, 408, 902
MboI GATC 3 cut(s) 253, 406, 900
MflI RGATCY 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 399, 981
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 201, 1016
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 4 cut(s) 245, 288, 581, 1067
MspR9I CCNGG 5 cut(s) 246, 289, 582, 755, 1068
MvaI CCWGG 1 cut(s) 755
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 7 cut(s) 20, 29, 238, 555, 755, 767, 776
NciI CCSGG 4 cut(s) 246, 289, 582, 1068
NdeI CATATG 1 cut(s) 853
NdeII GATC 3 cut(s) 253, 406, 900
NlaIII CATG 5 cut(s) 329, 572, 687, 715, 796
NlaIV GGNNCC 3 cut(s) 255, 927, 1065
NspI RCATGY 2 cut(s) 572, 687
PagI TCATGA 1 cut(s) 325
PciI ACATGT 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 579
PfeI GAWTC 3 cut(s) 306, 626, 1051
PkrI GCNGC 4 cut(s) 6, 760, 919, 949
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PscI ACATGT 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 753
PspGI CCWGG 1 cut(s) 753
PspN4I GGNNCC 3 cut(s) 255, 927, 1065
PspPI GGNCC 1 cut(s) 926
PsrI GAACNNNNNNTAC 2 cut(s) 509, 541
PstI CTGCAG 1 cut(s) 919
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 3 cut(s) 107, 298, 688
RsaNI GTAC 3 cut(s) 106, 297, 687
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 201, 1016
SatI GCNGC 4 cut(s) 5, 759, 918, 948
Sau3AI GATC 3 cut(s) 253, 406, 900
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 5 cut(s) 246, 289, 582, 755, 1068
SfaNI GCATC 4 cut(s) 23, 811, 832, 896
SfcI CTRYAG 1 cut(s) 915
SfiI GGCCNNNNNGGCC 1 cut(s) 29
SinI GGWCC 1 cut(s) 926
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SpeI ACTAGT 1 cut(s) 941
SsiI CCGC 3 cut(s) 5, 790, 818
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 5 cut(s) 244, 287, 580, 753, 1066
TaaI ACNGT 3 cut(s) 371, 516, 545
TaiI ACGT 2 cut(s) 30, 111
TaqI TCGA 5 cut(s) 17, 144, 504, 1026, 1049
TatI WGTACW 2 cut(s) 296, 686
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 306, 626, 1051
Tru1I TTAA 2 cut(s) 201, 1016
Tru9I TTAA 2 cut(s) 201, 1016
TscAI CASTG 4 cut(s) 299, 376, 475, 927
TseI GCWGC 3 cut(s) 758, 917, 947
TspDTI ATGAA 5 cut(s) 402, 620, 700, 870, 1035
TspRI CASTG 4 cut(s) 299, 376, 475, 927
VpaK11BI GGWCC 1 cut(s) 926
XceI RCATGY 2 cut(s) 572, 687
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.