FvH4_6g15130

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002824
Physical Location & Seq
Forward (+)
9399399 .. 9403316
3918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15130.t1

Sequence Viewer

Length: 1083 bp
ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCGAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAATAAGAGCAAGAATGTCCAGAAGTACGTCCAGACTCTCAAGCAGTCCGTCCAGCCCATGCCTGATCTTTCCAAGACCGCAGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAACTTAATGAGTTATTTAAGGTTGCTATCAGTCAACCAAAAGTACCAGTTGGTGTTGATCCCAAGTCTATATTATGCGAGTTTTACAAAGCGGGGCAGTGTGCTAAAGGTTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATATTTACAGTGATAAGCGTCAAAATGAAACAATGGAGGAATGGGATCAAGAGACTTTGGAGAAGGTGGTGGAGTCAAGGAGAAAAGAGTACAATATGAACAAACCAACTGATATTGTTTGTAAATACTTTTTGGAAGCAGTGGAGAGAAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTCCTCCAGGATATATTTTGAAGTCTCAGATGAAAGCTCTGTTGGAGGAAGAGTCTGATAAGATACCGATTGAGGAGGAGATTGAAAGTCAGCGTGCTAAGTTGAAAACTTCAACTCCTATGACTCCCGAGTTGTTTATGCAATGGAAGAAGAAAAAGATAGCGGAAAGAGATGCTGGCTTGGCTTCACAAATGGCAGAGCGGGCTAAGAATGACCGTATGAGTGGTCGTGAACTATTTTTGTCAGATGCAAGCTTATTTGTGGATGATGCTGAGGCATATGAGAAGTATCAAAGACATCAAGAATCTGAAGTTGCTGAAAAGGTTAGTAACATTGCTGATGGAGGTGAGCCAAAGAGCTCAGCAACAGCTGATGATGATGCCAAAGTTACCAACATCGATGATGATGTTGATGATGATGACTTGGATATAAATGAGCTAAACGAGTTGGAAGCAAGGTTATCAAAGGCAACAATTCAAGAACCAGGCACTAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

361

Amino Acids

41.14

Weight (kDa)

6.04

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 215 - 294 5.1e-19 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 784
AciI CCGC 5 cut(s) 5, 162, 296, 746, 784
AclWI GGATC 2 cut(s) 257, 423
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 3 cut(s) 110, 249, 461
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 7 cut(s) 319, 343, 604, 668, 688, 696, 1061
AhlI ACTAGT 1 cut(s) 1073
AjnI CCWGG 2 cut(s) 589, 1066
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 608, 640
AluBI AGCT 5 cut(s) 620, 837, 942, 953, 1021
AluI AGCT 5 cut(s) 620, 837, 942, 953, 1021
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 2 cut(s) 416, 612
AlwI GGATC 2 cut(s) 257, 423
Ama87I CYCGRG 1 cut(s) 710
AoxI GGCC 2 cut(s) 24, 192
ApeKI GCWGC 2 cut(s) 13, 164
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsuHPI GGTGA 1 cut(s) 941
AvaI CYCGRG 1 cut(s) 710
BanII GRGCYC 2 cut(s) 75, 944
Bbv12I GWGCWC 1 cut(s) 944
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 2 cut(s) 25, 176
BccI CCATC 1 cut(s) 917
BciT130I CCWGG 2 cut(s) 591, 1068
BcoDI GTCTC 2 cut(s) 416, 612
BcuI ACTAGT 1 cut(s) 1073
BfaI CTAG 1 cut(s) 1074
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 5, 14, 165
BlpI GCTNAGC 1 cut(s) 943
BlsI GCNGC 3 cut(s) 6, 15, 166
Bme1390I CCNGG 2 cut(s) 591, 1068
BmeT110I CYCGRG 1 cut(s) 710
BmrFI CCNGG 2 cut(s) 591, 1068
BmsI GCATC 4 cut(s) 745, 820, 841, 952
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 855
Bpu1102I GCTNAGC 1 cut(s) 943
BpuEI CTTGAG 2 cut(s) 59, 107
Bsa29I ATCGAT 1 cut(s) 981
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 4 cut(s) 620, 650, 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 2 cut(s) 731, 915
BseBI CCWGG 2 cut(s) 591, 1068
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 853
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMI GCAATG 2 cut(s) 731, 915
BseMII CTCAG 3 cut(s) 623, 846, 957
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 671, 674
BseXI GCAGC 2 cut(s) 25, 176
BshFI GGCC 2 cut(s) 26, 194
BshVI ATCGAT 1 cut(s) 981
BsiHKAI GWGCWC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 710
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 2 cut(s) 416, 612
BsnI GGCC 2 cut(s) 26, 194
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 75, 944
Bsp143I GATC 4 cut(s) 48, 148, 262, 415
Bsp1720I GCTNAGC 1 cut(s) 943
BspACI CCGC 5 cut(s) 5, 162, 296, 746, 784
BspANI GGCC 2 cut(s) 26, 194
BspCNI CTCAG 3 cut(s) 622, 847, 956
BspDI ATCGAT 1 cut(s) 981
BspPI GGATC 2 cut(s) 257, 423
BspQI GCTCTTC 1 cut(s) 588
BsrBI CCGCTC 1 cut(s) 784
BsrDI GCAATG 2 cut(s) 731, 915
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 4 cut(s) 48, 148, 262, 415
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 591, 1068
Bst4CI ACNGT 2 cut(s) 380, 800
Bst6I CTCTTC 3 cut(s) 180, 588, 627
BstC8I GCNNGC 5 cut(s) 579, 678, 760, 786, 835
BstDEI CTNAG 5 cut(s) 609, 681, 789, 855, 943
BstF5I GGATG 1 cut(s) 853
BstKTI GATC 4 cut(s) 51, 151, 265, 418
BstMAI GTCTC 2 cut(s) 416, 612
BstMBI GATC 4 cut(s) 48, 148, 262, 415
BstMWI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 764, 785
BstNI CCWGG 2 cut(s) 591, 1068
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 589, 1066
BstV1I GCAGC 2 cut(s) 25, 176
Bsu15I ATCGAT 1 cut(s) 981
BsuRI GGCC 2 cut(s) 26, 194
BsuTUI ATCGAT 1 cut(s) 981
BtsCI GGATG 1 cut(s) 853
BtsI GCAGTG 2 cut(s) 308, 516
BtsIMutI CAGTG 3 cut(s) 308, 385, 516
Cac8I GCNNGC 5 cut(s) 579, 678, 760, 786, 835
ClaI ATCGAT 1 cut(s) 981
CseI GACGC 1 cut(s) 377
Csp6I GTAC 3 cut(s) 109, 248, 460
CviAII CATG 3 cut(s) 142, 335, 578
CviQI GTAC 3 cut(s) 109, 248, 460
DdeI CTNAG 5 cut(s) 609, 681, 789, 855, 943
DpnI GATC 4 cut(s) 50, 150, 264, 417
DpnII GATC 4 cut(s) 48, 148, 262, 415
Eam1104I CTCTTC 3 cut(s) 180, 588, 627
EarI CTCTTC 3 cut(s) 180, 588, 627
Ecl136II GAGCTC 1 cut(s) 942
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 75, 944
Eco53kI GAGCTC 1 cut(s) 942
Eco57I CTGAAG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 942
EcoRII CCWGG 2 cut(s) 589, 1066
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 75, 944
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 145, 338, 581
FatI CATG 3 cut(s) 141, 334, 577
FauI CCCGC 2 cut(s) 289, 777
FauNDI CATATG 1 cut(s) 862
Fnu4HI GCNGC 3 cut(s) 5, 14, 165
FokI GGATG 1 cut(s) 860
FriOI GRGCYC 2 cut(s) 75, 944
Fsp4HI GCNGC 3 cut(s) 5, 14, 165
FspBI CTAG 1 cut(s) 1074
GluI GCNGC 3 cut(s) 5, 14, 165
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 2 cut(s) 26, 194
HgaI GACGC 1 cut(s) 377
Hin1II CATG 3 cut(s) 145, 338, 581
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 5 cut(s) 118, 443, 635, 706, 887
HphI GGTGA 1 cut(s) 941
Hpy166II GTNNAC 2 cut(s) 239, 815
Hpy188I TCNGA 5 cut(s) 351, 612, 640, 829, 892
Hpy188III TCNNGA 8 cut(s) 76, 103, 115, 419, 710, 812, 884, 1061
Hpy8I GTNNAC 2 cut(s) 239, 815
HpyAV CCTTC 5 cut(s) 16, 76, 172, 184, 427
HpyCH4III ACNGT 2 cut(s) 380, 800
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 324, 724, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 764, 785
HpyF3I CTNAG 5 cut(s) 609, 681, 789, 855, 943
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 3 cut(s) 145, 338, 581
Kzo9I GATC 4 cut(s) 48, 148, 262, 415
LguI GCTCTTC 1 cut(s) 588
Lsp1109I GCAGC 2 cut(s) 25, 176
LweI GCATC 4 cut(s) 745, 820, 841, 952
MaeI CTAG 1 cut(s) 1074
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 911, 970
MalI GATC 4 cut(s) 50, 150, 264, 417
MbiI CCGCTC 1 cut(s) 784
MboI GATC 4 cut(s) 48, 148, 262, 415
MboII GAAGA 7 cut(s) 49, 58, 197, 575, 644, 742, 745
MhlI GDGCHC 2 cut(s) 75, 944
MluCI AATT 1 cut(s) 1056
MlyI GAGTC 4 cut(s) 112, 452, 644, 700
MmeI TCCRAC 2 cut(s) 606, 1011
MseI TTAA 3 cut(s) 210, 222, 1081
MspA1I CMGCKG 1 cut(s) 953
MspR9I CCNGG 2 cut(s) 591, 1068
MvaI CCWGG 2 cut(s) 591, 1068
MwoI GCNNNNNNNGC 5 cut(s) 10, 13, 32, 764, 785
NdeI CATATG 1 cut(s) 862
NdeII GATC 4 cut(s) 48, 148, 262, 415
NlaIII CATG 3 cut(s) 145, 338, 581
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 887
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 3 cut(s) 6, 15, 166
PleI GAGTC 4 cut(s) 112, 451, 643, 700
PpsI GAGTC 4 cut(s) 112, 451, 643, 700
Psp124BI GAGCTC 1 cut(s) 944
Psp6I CCWGG 2 cut(s) 589, 1066
PspGI CCWGG 2 cut(s) 589, 1066
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 3 cut(s) 110, 249, 461
RsaNI GTAC 3 cut(s) 109, 248, 460
SacI GAGCTC 1 cut(s) 944
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 210, 222, 1081
SatI GCNGC 3 cut(s) 5, 14, 165
Sau3AI GATC 4 cut(s) 48, 148, 262, 415
SchI GAGTC 4 cut(s) 112, 452, 644, 700
ScrFI CCNGG 2 cut(s) 591, 1068
SduI GDGCHC 2 cut(s) 75, 944
SfaNI GCATC 4 cut(s) 745, 820, 841, 952
SmlI CTYRAG 2 cut(s) 74, 122
SmoI CTYRAG 2 cut(s) 74, 122
SpeI ACTAGT 1 cut(s) 1073
SphI GCATGC 1 cut(s) 581
Sse9I AATT 1 cut(s) 1056
SsiI CCGC 5 cut(s) 5, 162, 296, 746, 784
SspMI CTAG 1 cut(s) 1074
SstI GAGCTC 1 cut(s) 944
StyD4I CCNGG 2 cut(s) 589, 1066
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 380, 800
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 20, 981
TasI AATT 1 cut(s) 1056
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 3 cut(s) 210, 222, 1081
Tru9I TTAA 3 cut(s) 210, 222, 1081
TscAI CASTG 3 cut(s) 308, 385, 516
TseI GCWGC 2 cut(s) 13, 164
TspDTI ATGAA 3 cut(s) 411, 482, 629
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 3 cut(s) 308, 385, 516
XceI RCATGY 1 cut(s) 581
XspI CTAG 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.