Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Forward (+)

13421236 .. 13424580

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCAAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAATAAGAGCAAGAATGTCCAGAAGTACGTCCAGACTCTCAAGCAGTCCGTCGAGCCCAAGCCTGATCTCTCCAAAACCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAGGCGAAGGACAAGGAACTAAATGAGTTGTTTAAGGTTGCTATCAGTCAACCAAAAGTACCAGTTGGTGTTGATCCTAAGTCTATATTATGCGAGTTTTATAAAGCGGGGCAGTGTGCTAAAGGTTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATCTTTACAGTGATAAGCGTCAAAATGAAACAATGGAGGAATGGGATCAAGAAACTTTGGAGAAAGTTGTGGAGTCAAAGAGAAAAGAGTACAATATAAACAAGCCAACTGATATTGTTTGTAAATACTTTTTGGAAGCAGTGGAGAAAAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTCCTCCAGGATATATTCTGAAATCTCAGATGAAACGTGCTAAGTTGAAAACTTCGACTCCAATGACTCCTGAGTTGTTCATAGATGCTGGCTTGGCTTCAAAAATGGCAGAGCGGGCTAAGAATGACCGTATGAGTGGTCGTGAACTGTTTTTGTCAGATTCAACCTTATTTGTGGATGATGCTGAGGCATCTGAGAAGTATCAAAGAGAGAAGGAATCTGAAGTTGCTGAAAAGAAGGTTAGTAACAATGCTAATGGAGGTGGGCCAAATGTTGCTGATGGTGATGCCAAAGCTACCAACATGGATGACAGTGTTGAAGATGACGACTTGGACATAAATGAGTTAAACGAGTTGGAAGCAAGCTTATCAAAGGTAACAATTCAAGAGCCAGGCACTAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

329

Amino Acids

37.19

Weight (kDa)

8.46

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AccBSI	CCGCTC	1 cut(s)	697
AciI	CCGC	4 cut(s)	5, 162, 296, 697
AclWI	GGATC	2 cut(s)	257, 423
AcuI	CTGAAG	1 cut(s)	825
AfaI	GTAC	3 cut(s)	110, 249, 461
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	7 cut(s)	319, 343, 631, 684, 747, 902, 968
AhlI	ACTAGT	1 cut(s)	980
AjnI	CCWGG	2 cut(s)	589, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	2 cut(s)	878, 948
AluI	AGCT	2 cut(s)	878, 948
AlwI	GGATC	2 cut(s)	257, 423
AoxI	GGCC	2 cut(s)	24, 848
ApeKI	GCWGC	2 cut(s)	13, 164
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	1 cut(s)	878
BanII	GRGCYC	2 cut(s)	75, 141
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	2 cut(s)	25, 151
BccI	CCATC	1 cut(s)	857
BciT130I	CCWGG	2 cut(s)	591, 975
BcuI	ACTAGT	1 cut(s)	980
BfaI	CTAG	1 cut(s)	981
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	5, 14, 165
BlsI	GCNGC	3 cut(s)	6, 15, 166
Bme1390I	CCNGG	2 cut(s)	591, 975
BmgT120I	GGNCC	1 cut(s)	848
BmrFI	CCNGG	2 cut(s)	591, 975
BmsI	GCATC	4 cut(s)	658, 754, 782, 859
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	768
BpuEI	CTTGAG	2 cut(s)	59, 107
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	591, 975
BseGI	GGATG	2 cut(s)	766, 895
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	4 cut(s)	623, 645, 759, 768
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	25, 151
BshFI	GGCC	2 cut(s)	26, 850
BslI	CCNNNNNNNGG	1 cut(s)	554
BsnI	GGCC	2 cut(s)	26, 850
Bsp1286I	GDGCHC	2 cut(s)	75, 141
Bsp143I	GATC	5 cut(s)	48, 148, 262, 370, 415
BspACI	CCGC	4 cut(s)	5, 162, 296, 697
BspANI	GGCC	2 cut(s)	26, 850
BspCNI	CTCAG	4 cut(s)	622, 646, 760, 769
BspPI	GGATC	2 cut(s)	257, 423
BspQI	GCTCTTC	1 cut(s)	588
BsrBI	CCGCTC	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	251
BssMI	GATC	5 cut(s)	48, 148, 262, 370, 415
Bst2UI	CCWGG	2 cut(s)	591, 975
Bst4CI	ACNGT	4 cut(s)	380, 713, 732, 896
Bst6I	CTCTTC	2 cut(s)	180, 588
BstC8I	GCNNGC	4 cut(s)	579, 673, 699, 946
BstDEI	CTNAG	8 cut(s)	168, 267, 609, 624, 654, 702, 768, 777
BstF5I	GGATG	2 cut(s)	766, 895
BstKTI	GATC	5 cut(s)	51, 151, 265, 373, 418
BstMBI	GATC	5 cut(s)	48, 148, 262, 370, 415
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 13, 32, 677, 698
BstNI	CCWGG	2 cut(s)	591, 975
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	589, 973
BstV1I	GCAGC	2 cut(s)	25, 151
BsuRI	GGCC	2 cut(s)	26, 850
BtsCI	GGATG	2 cut(s)	766, 895
BtsI	GCAGTG	2 cut(s)	308, 516
BtsIMutI	CAGTG	4 cut(s)	308, 385, 516, 901
Cac8I	GCNNGC	4 cut(s)	579, 673, 699, 946
Cfr13I	GGNCC	1 cut(s)	848
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	3 cut(s)	109, 248, 460
CviAII	CATG	3 cut(s)	335, 578, 886
CviQI	GTAC	3 cut(s)	109, 248, 460
DdeI	CTNAG	8 cut(s)	168, 267, 609, 624, 654, 702, 768, 777
DpnI	GATC	5 cut(s)	50, 150, 264, 372, 417
DpnII	GATC	5 cut(s)	48, 148, 262, 370, 415
Eam1104I	CTCTTC	2 cut(s)	180, 588
EarI	CTCTTC	2 cut(s)	180, 588
Eco24I	GRGCYC	2 cut(s)	75, 141
Eco57I	CTGAAG	1 cut(s)	825
EcoRII	CCWGG	2 cut(s)	589, 973
EcoT38I	GRGCYC	2 cut(s)	75, 141
FaeI	CATG	3 cut(s)	338, 581, 889
FatI	CATG	3 cut(s)	334, 577, 885
FauI	CCCGC	2 cut(s)	289, 690
Fnu4HI	GCNGC	3 cut(s)	5, 14, 165
FokI	GGATG	2 cut(s)	773, 902
FriOI	GRGCYC	2 cut(s)	75, 141
Fsp4HI	GCNGC	3 cut(s)	5, 14, 165
FspBI	CTAG	1 cut(s)	981
GluI	GCNGC	3 cut(s)	5, 14, 165
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	26, 850
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	338, 581, 889
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	946
HinfI	GANTC	6 cut(s)	118, 443, 640, 649, 743, 800
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	2 cut(s)	239, 728
Hpy188I	TCNGA	6 cut(s)	351, 603, 612, 742, 778, 805
Hpy188III	TCNNGA	7 cut(s)	76, 103, 115, 419, 653, 725, 968
Hpy8I	GTNNAC	2 cut(s)	239, 728
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	7 cut(s)	16, 76, 172, 184, 190, 790, 814
HpyCH4III	ACNGT	4 cut(s)	380, 713, 732, 896
HpyCH4IV	ACGT	2 cut(s)	111, 619
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 13, 32, 677, 698
HpyF3I	CTNAG	8 cut(s)	168, 267, 609, 624, 654, 702, 768, 777
HpySE526I	ACGT	2 cut(s)	111, 619
Hsp92II	CATG	3 cut(s)	338, 581, 889
Kzo9I	GATC	5 cut(s)	48, 148, 262, 370, 415
LguI	GCTCTTC	1 cut(s)	588
Lsp1109I	GCAGC	2 cut(s)	25, 151
LweI	GCATC	4 cut(s)	658, 754, 782, 859
MaeI	CTAG	1 cut(s)	981
MaeII	ACGT	2 cut(s)	111, 619
MaeIII	GTNAC	2 cut(s)	827, 958
MalI	GATC	5 cut(s)	50, 150, 264, 372, 417
MbiI	CCGCTC	1 cut(s)	697
MboI	GATC	5 cut(s)	48, 148, 262, 370, 415
MboII	GAAGA	4 cut(s)	58, 197, 575, 914
MhlI	GDGCHC	2 cut(s)	75, 141
MluCI	AATT	1 cut(s)	963
MlyI	GAGTC	4 cut(s)	112, 452, 634, 643
MmeI	TCCRAC	1 cut(s)	918
MnlI	CCTC	7 cut(s)	49, 175, 345, 400, 597, 763, 836
MseI	TTAA	3 cut(s)	222, 929, 988
MspA1I	CMGCKG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	591, 975
MvaI	CCWGG	2 cut(s)	591, 975
MwoI	GCNNNNNNNGC	5 cut(s)	10, 13, 32, 677, 698
NdeII	GATC	5 cut(s)	48, 148, 262, 370, 415
NlaIII	CATG	3 cut(s)	338, 581, 889
NspI	RCATGY	1 cut(s)	581
PaeI	GCATGC	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	743, 800
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	6, 15, 166
PleI	GAGTC	4 cut(s)	112, 451, 634, 643
PpsI	GAGTC	4 cut(s)	112, 451, 634, 643
PsiI	TTATAA	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	589, 973
PspGI	CCWGG	2 cut(s)	589, 973
PspPI	GGNCC	1 cut(s)	848
RsaI	GTAC	3 cut(s)	110, 249, 461
RsaNI	GTAC	3 cut(s)	109, 248, 460
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	3 cut(s)	222, 929, 988
SatI	GCNGC	3 cut(s)	5, 14, 165
Sau3AI	GATC	5 cut(s)	48, 148, 262, 370, 415
Sau96I	GGNCC	1 cut(s)	848
SchI	GAGTC	4 cut(s)	112, 452, 634, 643
ScrFI	CCNGG	2 cut(s)	591, 975
SduI	GDGCHC	2 cut(s)	75, 141
SfaNI	GCATC	4 cut(s)	658, 754, 782, 859
SmlI	CTYRAG	2 cut(s)	74, 122
SmoI	CTYRAG	2 cut(s)	74, 122
SpeI	ACTAGT	1 cut(s)	980
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	1 cut(s)	963
SsiI	CCGC	4 cut(s)	5, 162, 296, 697
SspMI	CTAG	1 cut(s)	981
StyD4I	CCNGG	2 cut(s)	589, 973
TaaI	ACNGT	4 cut(s)	380, 713, 732, 896
TaiI	ACGT	2 cut(s)	114, 622
TaqI	TCGA	3 cut(s)	20, 135, 638
TasI	AATT	1 cut(s)	963
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	743, 800
Tru1I	TTAA	3 cut(s)	222, 929, 988
Tru9I	TTAA	3 cut(s)	222, 929, 988
TscAI	CASTG	4 cut(s)	308, 385, 516, 901
TseI	GCWGC	2 cut(s)	13, 164
TspDTI	ATGAA	3 cut(s)	411, 629, 652
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	4 cut(s)	308, 385, 516, 901
XceI	RCATGY	1 cut(s)	581
XspI	CTAG	1 cut(s)	981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.