Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Reverse (-)

20162325 .. 20164658

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1126400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCGAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAACAAGAGCAAGAACGTGCAGAAGTATGTTCAGAGCCTCAAGCAATCTGTCGAGCTGAAACCCGATCCTTCCAAGACTGCCGTTAAGAAGAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAACTGAATGAATTATTTAAGGTTGCTGTTAGTCAACCGAAAGTACCAGTTGGTGTTGATCCCAAGTCTATAGTATGTGAGTTCTATAAGGTGGGGCAGTGCGCAAAAGGTTTCAAGTGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGACATTTACAGTGATAAGCGTGATAATGAAGAAACAATGGAGGCCTGGGATCAAGAAACTTTGGAGAAGGTGGTGGAGTCGAAAAAAAATGAGTACAAGCAGAACAAACCAACTGATATTGTCTGTAAATATTTTTTAGAAGCAGTGGAGAAGAAACAATATGGTTGGTTTTGGGTATGTCCCAATGGCGGTAAAAATTGCCATTACAGGCATGCTCTTCCTCCAGGATATGTTTTGAAGTCTCAGATGAAGGCTCTGTTGGAGGAAGAGAGTGAAAAGATACCCATTGAAGAGGAGATTGAAAATCAGCGTGCTAAATTGACAACTTCAACCCCTATGACTCCTGACTTATTCATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

244

Amino Acids

28.09

Weight (kDa)

9.09

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	307
AciI	CCGC	2 cut(s)	5, 558
AclWI	GGATC	3 cut(s)	143, 257, 426
AfaI	GTAC	2 cut(s)	249, 464
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	7 cut(s)	319, 343, 607, 659, 671, 699, 728
AjnI	CCWGG	2 cut(s)	413, 592
AjuI	GAANNNNNNNTTGG	4 cut(s)	14, 46, 611, 643
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	3 cut(s)	143, 257, 426
AoxI	GGCC	3 cut(s)	24, 192, 411
ApeKI	GCWGC	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	415, 594
BcoDI	GTCTC	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	5, 14
BlsI	GCNGC	2 cut(s)	6, 15
Bme1390I	CCNGG	2 cut(s)	415, 594
BmrFI	CCNGG	2 cut(s)	415, 594
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	59, 107
BsaJI	CCNNGG	2 cut(s)	195, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	415, 594
BseDI	CCNNGG	2 cut(s)	195, 414
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	26, 194, 413
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	3 cut(s)	26, 194, 413
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	48, 148, 262, 418
BspACI	CCGC	2 cut(s)	5, 558
BspANI	GGCC	3 cut(s)	26, 194, 413
BspCNI	CTCAG	1 cut(s)	625
BspPI	GGATC	3 cut(s)	143, 257, 426
BspQI	GCTCTTC	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	195, 414
BssMI	GATC	4 cut(s)	48, 148, 262, 418
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	415, 594
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	4 cut(s)	180, 591, 630, 654
BstC8I	GCNNGC	2 cut(s)	582, 681
BstDEI	CTNAG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	4 cut(s)	51, 151, 265, 421
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	4 cut(s)	48, 148, 262, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 13, 32
BstNI	CCWGG	2 cut(s)	415, 594
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	2 cut(s)	413, 592
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	26, 194, 413
BtsI	GCAGTG	2 cut(s)	308, 519
BtsIMutI	CAGTG	3 cut(s)	308, 385, 519
Cac8I	GCNNGC	2 cut(s)	582, 681
CfoI	GCGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	248, 463
CviAII	CATG	2 cut(s)	335, 581
CviJI	RGCY	7 cut(s)	26, 73, 120, 139, 194, 413, 623
CviKI_1	RGCY	7 cut(s)	26, 73, 120, 139, 194, 413, 623
CviQI	GTAC	2 cut(s)	248, 463
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	4 cut(s)	50, 150, 264, 420
DpnII	GATC	4 cut(s)	48, 148, 262, 418
Eam1104I	CTCTTC	4 cut(s)	180, 591, 630, 654
EarI	CTCTTC	4 cut(s)	180, 591, 630, 654
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	413
Eco24I	GRGCYC	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	413, 592
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	338, 584
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	2 cut(s)	334, 580
Fnu4HI	GCNGC	2 cut(s)	5, 14
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	5, 14
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	5, 14
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	26, 194, 413
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	338, 584
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	2 cut(s)	446, 709
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	117, 351, 615
Hpy188III	TCNNGA	3 cut(s)	76, 422, 713
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	7 cut(s)	16, 76, 162, 172, 184, 430, 613
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	103, 324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 13, 32
HpyF3I	CTNAG	1 cut(s)	612
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	338, 584
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	4 cut(s)	48, 148, 262, 418
LguI	GCTCTTC	1 cut(s)	591
LpnPI	CCDG	7 cut(s)	264, 400, 427, 562, 579, 606, 726
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	99
MalI	GATC	4 cut(s)	50, 150, 264, 420
MboI	GATC	4 cut(s)	48, 148, 262, 418
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	3 cut(s)	215, 565, 686
MlyI	GAGTC	2 cut(s)	455, 703
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	8 cut(s)	49, 131, 175, 345, 403, 600, 625, 655
MseI	TTAA	2 cut(s)	168, 222
MspR9I	CCNGG	2 cut(s)	415, 594
MvaI	CCWGG	2 cut(s)	415, 594
MwoI	GCNNNNNNNGC	3 cut(s)	10, 13, 32
NdeII	GATC	4 cut(s)	48, 148, 262, 418
NlaIII	CATG	2 cut(s)	338, 584
NsbI	TGCGCA	1 cut(s)	307
NspI	RCATGY	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	591
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	6, 15
PleI	GAGTC	2 cut(s)	454, 703
PpsI	GAGTC	2 cut(s)	454, 703
Psp6I	CCWGG	2 cut(s)	413, 592
PspGI	CCWGG	2 cut(s)	413, 592
RsaI	GTAC	2 cut(s)	249, 464
RsaNI	GTAC	2 cut(s)	248, 463
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	168, 222
SatI	GCNGC	2 cut(s)	5, 14
Sau3AI	GATC	4 cut(s)	48, 148, 262, 418
SchI	GAGTC	2 cut(s)	455, 703
ScrFI	CCNGG	2 cut(s)	415, 594
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	7 cut(s)	68, 102, 141, 228, 297, 316, 441
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	74, 122
SmoI	CTYRAG	2 cut(s)	74, 122
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	3 cut(s)	215, 565, 686
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	2 cut(s)	5, 558
SspI	AATATT	1 cut(s)	500
StuI	AGGCCT	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	413, 592
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	20, 135, 449
TasI	AATT	3 cut(s)	215, 565, 686
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	168, 222
Tru9I	TTAA	2 cut(s)	168, 222
TscAI	CASTG	3 cut(s)	308, 385, 519
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	4 cut(s)	228, 411, 632, 712
TspRI	CASTG	3 cut(s)	308, 385, 519
XceI	RCATGY	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.