Rh3DG165200

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002824
Physical Location & Seq
Forward (+)
14350767 .. 14355192
4426 bp
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UTR
Exon/CDS
Intron
Rh3DG165200.1

Sequence Viewer

Length: 846 bp
ATGCTTATTTGTTTAGGTGTTGATCCTAAGTCTATATTATGCGAGTTTTATAAAGCGGGGCAGTGTGCTAAAGGTTTCAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATCTTTACAGTGATAAGCGTCAAAATGAAACAATGGAGGAATGGGATCAAGAAACTTTGGAGAAAGTTGTGGAGTCAAAGAGAAAAGAGTACAATATAAACAAACCAACTGATATTGTTTGTAAATACTTTTTGGAAGCAGTGGAGAAAAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTCCTCCAGGATATATTCTGAAATCTCAGATGAAAGCTCTGTTGGAGGAAGAGACTGAAAAGATACCTATTGAGGAGGAGATTGAAGATCAGCGTGCTAAGTTGAAAACTTCAACTCCAATGACTCCTGAGTTGTTCATGCAATGGAAGAAGAAAAAGATAGCAGAAAGAGATGCTGGCTTGGCTTCAAAAATGGCAGAGCGGGCTAAGAATGACCGTATGAGTGGTCGTGAACTGTTTTTGTCAGATTCAACCTTATTTGTGGATGATGCTGAGGCATCTGAGAAGTATCAAAGAGATAAAGAATCTGAAGTTGCTGAAAAGAAGGTTAGTAACAATGCTAATGGAGGTGGGCCAAATAGCTCAGCAACAGCTGATGGTGATGCCAAAGCTACCAACATCGATGACGATGTTGATGATGACGACTTGGACATAAATGAGTTAAACGAGTTGGAAGCAAGCCTATCAAAGGTAACAATTCAAGAGCCAGGCACTAGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DFRP_C

Protein Analysis

281

Amino Acids

31.88

Weight (kDa)

4.96

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DFRP_C PF16543 135 - 214 1.5e-18 DRG Family Regulatory Proteins, Tma46
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 544
AciI CCGC 2 cut(s) 56, 544
AclWI GGATC 2 cut(s) 17, 183
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 314, 811
AgsI TTSAA 8 cut(s) 79, 103, 428, 448, 456, 531, 594, 824
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 2 cut(s) 349, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 4 cut(s) 380, 705, 716, 734
AluI AGCT 4 cut(s) 380, 705, 716, 734
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 17, 183
AoxI GGCC 1 cut(s) 695
AspS9I GGNCC 1 cut(s) 695
AsuHPI GGTGA 1 cut(s) 734
BbvCI CCTCAGC 1 cut(s) 615
BccI CCATC 1 cut(s) 713
BciT130I CCWGG 2 cut(s) 351, 831
BcoDI GTCTC 1 cut(s) 389
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 1 cut(s) 837
BlpI GCTNAGC 1 cut(s) 706
Bme1390I CCNGG 2 cut(s) 351, 831
BmgT120I GGNCC 1 cut(s) 695
BmrFI CCNGG 2 cut(s) 351, 831
BmsI GCATC 4 cut(s) 505, 601, 629, 715
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 706
Bsa29I ATCGAT 1 cut(s) 744
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 811
Bse3DI GCAATG 1 cut(s) 491
BseBI CCWGG 2 cut(s) 351, 831
BseCI ATCGAT 1 cut(s) 744
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 2 cut(s) 314, 811
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 5 cut(s) 383, 462, 606, 615, 720
BseRI GAGGAG 2 cut(s) 431, 434
BshFI GGCC 1 cut(s) 697
BshVI ATCGAT 1 cut(s) 744
BslI CCNNNNNNNGG 2 cut(s) 314, 811
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 1 cut(s) 697
Bsp143I GATC 4 cut(s) 22, 130, 175, 430
Bsp1720I GCTNAGC 1 cut(s) 706
BspACI CCGC 2 cut(s) 56, 544
BspANI GGCC 1 cut(s) 697
BspCNI CTCAG 5 cut(s) 382, 463, 607, 616, 719
BspDI ATCGAT 1 cut(s) 744
BspPI GGATC 2 cut(s) 17, 183
BspQI GCTCTTC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 491
BssMI GATC 4 cut(s) 22, 130, 175, 430
Bst2UI CCWGG 2 cut(s) 351, 831
Bst4CI ACNGT 3 cut(s) 140, 560, 579
Bst6I CTCTTC 2 cut(s) 348, 387
BstC8I GCNNGC 5 cut(s) 339, 438, 520, 546, 802
BstDEI CTNAG 8 cut(s) 27, 369, 441, 471, 549, 615, 624, 706
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 1 cut(s) 613
BstKTI GATC 4 cut(s) 25, 133, 178, 433
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 22, 130, 175, 430
BstMWI GCNNNNNNNGC 2 cut(s) 524, 545
BstNI CCWGG 2 cut(s) 351, 831
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 349, 829
Bsu15I ATCGAT 1 cut(s) 744
BsuRI GGCC 1 cut(s) 697
BsuTUI ATCGAT 1 cut(s) 744
BtsCI GGATG 1 cut(s) 613
BtsI GCAGTG 2 cut(s) 68, 276
BtsIMutI CAGTG 3 cut(s) 68, 145, 276
Cac8I GCNNGC 5 cut(s) 339, 438, 520, 546, 802
Cfr13I GGNCC 1 cut(s) 695
ClaI ATCGAT 1 cut(s) 744
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 220
CviAII CATG 3 cut(s) 95, 338, 481
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 8 cut(s) 27, 369, 441, 471, 549, 615, 624, 706
DpnI GATC 4 cut(s) 24, 132, 177, 432
DpnII GATC 4 cut(s) 22, 130, 175, 430
Eam1104I CTCTTC 2 cut(s) 348, 387
EarI CTCTTC 2 cut(s) 348, 387
Eco57I CTGAAG 1 cut(s) 672
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 349, 829
FaeI CATG 3 cut(s) 98, 341, 484
FatI CATG 3 cut(s) 94, 337, 480
FauI CCCGC 2 cut(s) 49, 537
FokI GGATG 1 cut(s) 620
FspBI CTAG 1 cut(s) 837
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 697
HgaI GACGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 98, 341, 484
HinfI GANTC 4 cut(s) 203, 466, 590, 647
HphI GGTGA 1 cut(s) 734
Hpy166II GTNNAC 1 cut(s) 575
Hpy188I TCNGA 6 cut(s) 111, 363, 372, 589, 625, 652
Hpy188III TCNNGA 4 cut(s) 179, 470, 572, 824
Hpy8I GTNNAC 1 cut(s) 575
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 3 cut(s) 140, 560, 579
HpyCH4V TGCA 2 cut(s) 84, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 545
HpyF3I CTNAG 8 cut(s) 27, 369, 441, 471, 549, 615, 624, 706
Hsp92II CATG 3 cut(s) 98, 341, 484
Kzo9I GATC 4 cut(s) 22, 130, 175, 430
LguI GCTCTTC 1 cut(s) 348
LpnPI CCDG 6 cut(s) 319, 336, 363, 483, 504, 816
LweI GCATC 4 cut(s) 505, 601, 629, 715
MaeI CTAG 1 cut(s) 837
MaeIII GTNAC 2 cut(s) 674, 814
MalI GATC 4 cut(s) 24, 132, 177, 432
MbiI CCGCTC 1 cut(s) 544
MboI GATC 4 cut(s) 22, 130, 175, 430
MboII GAAGA 5 cut(s) 335, 404, 440, 502, 505
MluCI AATT 1 cut(s) 819
MlyI GAGTC 2 cut(s) 212, 460
MmeI TCCRAC 2 cut(s) 366, 774
MnlI CCTC 8 cut(s) 105, 160, 357, 382, 409, 412, 610, 683
MseI TTAA 2 cut(s) 785, 844
MspA1I CMGCKG 1 cut(s) 716
MspR9I CCNGG 2 cut(s) 351, 831
MvaI CCWGG 2 cut(s) 351, 831
MwoI GCNNNNNNNGC 2 cut(s) 524, 545
NdeII GATC 4 cut(s) 22, 130, 175, 430
NlaIII CATG 3 cut(s) 98, 341, 484
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 590, 647
PfoI TCCNGGA 1 cut(s) 349
PleI GAGTC 2 cut(s) 211, 460
PpsI GAGTC 2 cut(s) 211, 460
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 349, 829
PspGI CCWGG 2 cut(s) 349, 829
PspPI GGNCC 1 cut(s) 695
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 785, 844
Sau3AI GATC 4 cut(s) 22, 130, 175, 430
Sau96I GGNCC 1 cut(s) 695
SchI GAGTC 2 cut(s) 212, 460
ScrFI CCNGG 2 cut(s) 351, 831
SfaNI GCATC 4 cut(s) 505, 601, 629, 715
SpeI ACTAGT 1 cut(s) 836
SphI GCATGC 1 cut(s) 341
Sse9I AATT 1 cut(s) 819
SsiI CCGC 2 cut(s) 56, 544
SspMI CTAG 1 cut(s) 837
StyD4I CCNGG 2 cut(s) 349, 829
TaaI ACNGT 3 cut(s) 140, 560, 579
TaqI TCGA 1 cut(s) 744
TasI AATT 1 cut(s) 819
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 590, 647
Tru1I TTAA 2 cut(s) 785, 844
Tru9I TTAA 2 cut(s) 785, 844
TscAI CASTG 3 cut(s) 68, 145, 276
TspDTI ATGAA 3 cut(s) 171, 389, 469
TspRI CASTG 3 cut(s) 68, 145, 276
XagI CCTNNNNNAGG 1 cut(s) 809
XceI RCATGY 1 cut(s) 341
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.