Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Reverse (-)

24893725 .. 24898506

Gene Structure 4782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G220500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCCGCCAAAGGCATCGAAGGCCGACTTGGCAAAGAAGCAGAAGGTCGTGGAGGACAAGACCTTTGGTCTGAAGAACAAGAACAAGAGTAAGAATGTCCAGAAGTACGTACAGAATCTCAAGCAGTCAGTCCAGCCCAAAGTAGACCCAACCAAAGCCAAGAAAAAGAAGGAGGAAGAGAAAGCCAAAGAGAAGGAGCTTAATGATTTGTTCAAGGTTGCTGTTAGTCAGCCAAAAGTGCCAGCTGGTGTTGATCCCAAGTCTATATTGTGCGAGTTTTTCAAGGTTGGGCAATGTACTAAGGGATTTAAGTGCAAGTTTTCCCATGATTTGAATGTTCAGAGGAAGGGTGAAAAGATTGATATTTACAGTGATAAGCGCGATGATGAAACAATGGAGGATTGGGATCAAGAGACGTTGGAGAAGGTTGTGGAGTCAAAGAAGAATGAGTATAACCAGAATAAGCCCACCGAGATTGTTTGCAAACACTTCTTGGAAGCAGTGGAAAAGAAGCAGTATGGTTGGTTTTGGGCTTGTCCAAATGGTGGAAAAGAGTGCCATTACAGACATGCTCTTCCTCCTGGCTATATTTTGAAGTCTCAGATGAAGTCACTTCTTGACGAAGAGTCTGAAAAAATTGCCATTGAGGATGAGATCGAAAATCAGCGTGCAAAAGTTACAACCTGTACTCCAATGACCACTGATTTGTTCATGCAATGGAGGAAGAAAAAGACAGAAGAGAAAGAGGCTGGCCTGGCTGTACAACGAGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGTTGTTTCTTGCGGATGCTAGCGTGTTTGTGGATGATGCTGAAGCTTATGAAAAATACCAGAGACAAGAACCCGAGGCTGCTGAAGAGAAGGTCAAAGACAACTCAGCAGCAGCAGGACCAAGCGCCTCTACTAGTGTGGCTGGGTCCGAAGAAGTCCCCATCGACGATGACGATGACGATGATGATGATGAGTTGGATTTGGATGAGTTAAATGAACTTGAAGCAAGTTTGTCAAGAACATCCATTCAGATAAGGGAACCAGGTATAGAGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

362

Amino Acids

41.05

Weight (kDa)

5.26

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	381
AciI	CCGC	3 cut(s)	5, 790, 818
AclWI	GGATC	2 cut(s)	248, 414
AcuI	CTGAAG	3 cut(s)	92, 867, 909
AfaI	GTAC	5 cut(s)	107, 111, 298, 688, 762
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	5 cut(s)	214, 283, 334, 595, 1028
AhdI	GACNNNNNGTC	2 cut(s)	66, 625
AhlI	ACTAGT	1 cut(s)	938
AjnI	CCWGG	3 cut(s)	580, 753, 1066
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	3 cut(s)	199, 245, 851
AluI	AGCT	3 cut(s)	199, 245, 851
Alw26I	GTCTC	3 cut(s)	407, 603, 862
AlwI	GGATC	2 cut(s)	248, 414
Ama87I	CYCGRG	1 cut(s)	878
AoxI	GGCC	2 cut(s)	21, 751
ApeKI	GCWGC	3 cut(s)	884, 914, 917
ArsI	GACNNNNNNTTYG	4 cut(s)	47, 79, 688, 720
AspLEI	GCGC	2 cut(s)	381, 932
AspS9I	GGNCC	2 cut(s)	923, 951
AsuHPI	GGTGA	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	824
AvaI	CYCGRG	1 cut(s)	878
AvaII	GGWCC	2 cut(s)	923, 951
BbvI	GCAGC	3 cut(s)	871, 926, 929
BccI	CCATC	1 cut(s)	974
BciT130I	CCWGG	3 cut(s)	582, 755, 1068
BcoDI	GTCTC	3 cut(s)	407, 603, 862
BcuI	ACTAGT	1 cut(s)	938
BfaI	CTAG	2 cut(s)	825, 939
BfoI	RGCGCY	1 cut(s)	933
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	4 cut(s)	5, 885, 915, 918
BlsI	GCNGC	4 cut(s)	6, 886, 916, 919
Bme1390I	CCNGG	3 cut(s)	582, 755, 1068
Bme18I	GGWCC	2 cut(s)	923, 951
BmeRI	GACNNNNNGTC	2 cut(s)	66, 625
BmeT110I	CYCGRG	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	923, 951
BmiI	GGNNCC	2 cut(s)	952, 1065
BmrFI	CCNGG	3 cut(s)	582, 755, 1068
BmsI	GCATC	3 cut(s)	23, 811, 832
BmtI	GCTAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse3DI	GCAATG	2 cut(s)	299, 722
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	3 cut(s)	582, 755, 1068
BseDI	CCNNGG	1 cut(s)	879
BseGI	GGATG	5 cut(s)	655, 826, 844, 1015, 1046
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	2 cut(s)	299, 722
BseMII	CTCAG	2 cut(s)	614, 924
BseXI	GCAGC	3 cut(s)	871, 926, 929
BseYI	CCCAGC	1 cut(s)	947
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	23, 753
BsiHKCI	CYCGRG	1 cut(s)	878
BslFI	GGGAC	1 cut(s)	947
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	3 cut(s)	407, 603, 862
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	947
BsnI	GGCC	2 cut(s)	23, 753
BsoBI	CYCGRG	1 cut(s)	878
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	3 cut(s)	253, 406, 654
BspACI	CCGC	3 cut(s)	5, 790, 818
BspANI	GGCC	2 cut(s)	23, 753
BspCNI	CTCAG	2 cut(s)	613, 923
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	952, 1065
BspOI	GCTAGC	1 cut(s)	828
BspPI	GGATC	2 cut(s)	248, 414
BspQI	GCTCTTC	1 cut(s)	579
BsrDI	GCAATG	2 cut(s)	299, 722
BsrGI	TGTACA	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	879
BssMI	GATC	3 cut(s)	253, 406, 654
Bst2UI	CCWGG	3 cut(s)	582, 755, 1068
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	5 cut(s)	171, 579, 618, 732, 885
BstAUI	TGTACA	1 cut(s)	760
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	4 cut(s)	243, 669, 751, 826
BstDEI	CTNAG	4 cut(s)	300, 600, 780, 910
BstF5I	GGATG	5 cut(s)	655, 826, 844, 1015, 1046
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	933
BstHHI	GCGC	2 cut(s)	381, 932
BstKTI	GATC	3 cut(s)	256, 409, 657
BstMAI	GTCTC	3 cut(s)	407, 603, 862
BstMBI	GATC	3 cut(s)	253, 406, 654
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 29, 238, 755, 776
BstNI	CCWGG	3 cut(s)	582, 755, 1068
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	580, 753, 1066
BstSNI	TACGTA	1 cut(s)	109
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	871, 926, 929
BsuRI	GGCC	2 cut(s)	23, 753
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	5 cut(s)	655, 826, 844, 1015, 1046
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	376, 507, 699
Cac8I	GCNNGC	4 cut(s)	243, 669, 751, 826
CfoI	GCGC	2 cut(s)	381, 932
Cfr13I	GGNCC	2 cut(s)	923, 951
CsiI	ACCWGGT	1 cut(s)	1066
Csp6I	GTAC	5 cut(s)	106, 110, 297, 687, 761
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	4 cut(s)	326, 569, 712, 793
CviQI	GTAC	5 cut(s)	106, 110, 297, 687, 761
DdeI	CTNAG	4 cut(s)	300, 600, 780, 910
DpnI	GATC	3 cut(s)	255, 408, 656
DpnII	GATC	3 cut(s)	253, 406, 654
DriI	GACNNNNNGTC	2 cut(s)	66, 625
Eam1104I	CTCTTC	5 cut(s)	171, 579, 618, 732, 885
Eam1105I	GACNNNNNGTC	2 cut(s)	66, 625
EarI	CTCTTC	5 cut(s)	171, 579, 618, 732, 885
Eco105I	TACGTA	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	923, 951
Eco57I	CTGAAG	3 cut(s)	92, 867, 909
Eco88I	CYCGRG	1 cut(s)	878
EcoRII	CCWGG	3 cut(s)	580, 753, 1066
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	4 cut(s)	329, 572, 715, 796
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	4 cut(s)	325, 568, 711, 792
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	5, 885, 915, 918
FokI	GGATG	5 cut(s)	662, 833, 851, 1022, 1033
Fsp4HI	GCNGC	4 cut(s)	5, 885, 915, 918
FspBI	CTAG	2 cut(s)	825, 939
GlaI	GCGC	2 cut(s)	380, 931
GluI	GCNGC	4 cut(s)	5, 885, 915, 918
GsaI	CCCAGC	1 cut(s)	951
HaeII	RGCGCY	1 cut(s)	933
HaeIII	GGCC	2 cut(s)	23, 753
HhaI	GCGC	2 cut(s)	381, 932
Hin1II	CATG	4 cut(s)	329, 572, 715, 796
Hin6I	GCGC	2 cut(s)	379, 930
HinP1I	GCGC	2 cut(s)	379, 930
HindIII	AAGCTT	1 cut(s)	849
HinfI	GANTC	3 cut(s)	115, 434, 626
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	6 cut(s)	72, 342, 603, 631, 955, 1056
Hpy188III	TCNNGA	6 cut(s)	100, 410, 617, 803, 1041, 1083
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	974
HpyAV	CCTTC	7 cut(s)	13, 37, 163, 187, 340, 418, 889
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	108, 416
HpyCH4V	TGCA	4 cut(s)	315, 483, 671, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 29, 238, 755, 776
HpyF3I	CTNAG	4 cut(s)	300, 600, 780, 910
HpySE526I	ACGT	2 cut(s)	108, 416
Hsp92II	CATG	4 cut(s)	329, 572, 715, 796
HspAI	GCGC	2 cut(s)	379, 930
Kzo9I	GATC	3 cut(s)	253, 406, 654
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	3 cut(s)	871, 926, 929
LweI	GCATC	3 cut(s)	23, 811, 832
MabI	ACCWGGT	1 cut(s)	1066
MaeI	CTAG	2 cut(s)	825, 939
MaeII	ACGT	2 cut(s)	108, 416
MaeIII	GTNAC	2 cut(s)	609, 676
MalI	GATC	3 cut(s)	255, 408, 656
MboI	GATC	3 cut(s)	253, 406, 654
MboII	GAAGA	9 cut(s)	85, 188, 454, 566, 635, 736, 749, 902, 968
MluCI	AATT	1 cut(s)	636
MlyI	GAGTC	2 cut(s)	443, 635
MmeI	TCCRAC	2 cut(s)	399, 981
MseI	TTAA	3 cut(s)	201, 309, 1016
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	3 cut(s)	582, 755, 1068
MvaI	CCWGG	3 cut(s)	582, 755, 1068
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	20, 29, 238, 755, 776
NdeII	GATC	3 cut(s)	253, 406, 654
NheI	GCTAGC	1 cut(s)	824
NlaIII	CATG	4 cut(s)	329, 572, 715, 796
NlaIV	GGNNCC	2 cut(s)	952, 1065
NmuCI	GTSAC	1 cut(s)	609
NspI	RCATGY	1 cut(s)	572
PciSI	GCTCTTC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PfeI	GAWTC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	6, 886, 916, 919
PleI	GAGTC	2 cut(s)	442, 634
PpsI	GAGTC	2 cut(s)	442, 634
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	3 cut(s)	580, 753, 1066
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	3 cut(s)	580, 753, 1066
PspN4I	GGNNCC	2 cut(s)	952, 1065
PspPI	GGNCC	2 cut(s)	923, 951
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	107, 111, 298, 688, 762
RsaNI	GTAC	5 cut(s)	106, 110, 297, 687, 761
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	201, 309, 1016
SatI	GCNGC	4 cut(s)	5, 885, 915, 918
Sau3AI	GATC	3 cut(s)	253, 406, 654
Sau96I	GGNCC	2 cut(s)	923, 951
SchI	GAGTC	2 cut(s)	443, 635
ScrFI	CCNGG	3 cut(s)	582, 755, 1068
SexAI	ACCWGGT	1 cut(s)	1066
SfaNI	GCATC	3 cut(s)	23, 811, 832
SinI	GGWCC	2 cut(s)	923, 951
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SnaBI	TACGTA	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	938
Sse9I	AATT	1 cut(s)	636
SsiI	CCGC	3 cut(s)	5, 790, 818
SspMI	CTAG	2 cut(s)	825, 939
StyD4I	CCNGG	3 cut(s)	580, 753, 1066
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	111, 419
TaqI	TCGA	3 cut(s)	17, 657, 969
TasI	AATT	1 cut(s)	636
TatI	WGTACW	3 cut(s)	296, 686, 760
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	201, 309, 1016
Tru9I	TTAA	3 cut(s)	201, 309, 1016
TscAI	CASTG	3 cut(s)	376, 507, 706
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	3 cut(s)	884, 914, 917
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	5 cut(s)	402, 620, 700, 870, 1035
TspRI	CASTG	3 cut(s)	376, 507, 706
Van91I	CCANNNNNTGG	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	923, 951
XceI	RCATGY	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	825, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.