Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020046.1

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Forward (+)

25126 .. 27453

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020046.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgcttactaaaaagaaggaggaagagaaggcgaaggacaaggaactaaatgagttgtttaaggttgctatcagtcaaccaaaagtaccagttggtgttgatcctaagtctatattttgcgagttttataaagcggggcagtgtgctaaaggtttcaaatgcaagttctcacatgatttgaatgttcagaggaaaggagaaaagattgatctttacagtgataagcgtcaaaatgaaacaatggaggaatgggatcaagaaactttggagaaagttgtggagtcaaagagaaaagagtacaatataaacaagccaactgatattgtttgtaaatactttttggaagcagtggagaaaaaacaatatggttggttttgggtctgccccaatggtggtaaagattgccattacaggcatgctcttcctccaggatatattctgaaatctcagatgaaagctctgttggaggaagagactgaaaagatacctattgaggaggagattgaagatcagcgtgctaagttgaaaacttcgactccaatgactcctgagttgttcatgcaatggaagaagaaaaagatagcagaaagagatgctggcttggcttcaaaaatggcagagcgggctaagaatgaccgtatgagtggtcgtgaactgtttttgtcagattcaaccttatttgtggatgatgctgaggcatctgagaagtatcaaagagagaaggaatctgaagttgctgaaaagaaggttagtaacaatgctaatggaggtgggccaaatgttgctgatggtgatgccaaagctaccaacatggatgacagtgttgaagatgacgacttggacataaatgagttaaacgagttggaagcaagcttatcaaagaatcatgatactgatctttcttatattgtggatatggtcttgggcagtgaatcttacagcttcaccatgcagtccgcccttgagaatggggtcgttagacgtggtatgaattatgttatacgttttggacatatgggttttcgaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

343

Amino Acids

39.29

Weight (kDa)

5.33

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	622
AciI	CCGC	3 cut(s)	134, 622, 957
AclWI	GGATC	2 cut(s)	95, 261
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	2 cut(s)	87, 299
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	7 cut(s)	157, 181, 506, 526, 609, 672, 827
AjiI	CACGTC	1 cut(s)	983
AjnI	CCWGG	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	4 cut(s)	458, 803, 873, 942
AluI	AGCT	4 cut(s)	458, 803, 873, 942
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	95, 261
AoxI	GGCC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	803, 937
BbvCI	CCTCAGC	1 cut(s)	693
BccI	CCATC	1 cut(s)	782
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	983
BmgT120I	GGNCC	1 cut(s)	773
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	4 cut(s)	583, 679, 707, 784
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	983
BsaBI	GATNNNNATC	1 cut(s)	894
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	569
Bse8I	GATNNNNATC	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	691, 820
BseJI	GATNNNNATC	1 cut(s)	894
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	4 cut(s)	461, 540, 684, 693
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	509, 512
Bsh1285I	CGRYCG	1 cut(s)	1028
BshFI	GGCC	1 cut(s)	775
BsiEI	CGRYCG	1 cut(s)	1028
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	100, 208, 253, 508, 895
BspACI	CCGC	3 cut(s)	134, 622, 957
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	4 cut(s)	460, 541, 685, 694
BspHI	TCATGA	1 cut(s)	886
BspPI	GGATC	2 cut(s)	95, 261
BspQI	GCTCTTC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	5 cut(s)	100, 208, 253, 508, 895
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	5 cut(s)	218, 638, 657, 821, 1029
Bst6I	CTCTTC	3 cut(s)	18, 426, 465
BstC8I	GCNNGC	5 cut(s)	417, 516, 598, 624, 871
BstDEI	CTNAG	7 cut(s)	105, 447, 519, 549, 627, 693, 702
BstF5I	GGATG	2 cut(s)	691, 820
BstKTI	GATC	5 cut(s)	103, 211, 256, 511, 898
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	5 cut(s)	100, 208, 253, 508, 895
BstMCI	CGRYCG	1 cut(s)	1028
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 623
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	775
BtrI	CACGTC	1 cut(s)	983
BtsCI	GGATG	2 cut(s)	691, 820
BtsI	GCAGTG	3 cut(s)	146, 354, 934
BtsIMutI	CAGTG	5 cut(s)	146, 223, 354, 826, 934
Cac8I	GCNNGC	5 cut(s)	417, 516, 598, 624, 871
CciI	TCATGA	1 cut(s)	886
Cfr13I	GGNCC	1 cut(s)	773
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	86, 298
CviAII	CATG	6 cut(s)	173, 416, 559, 811, 887, 949
CviJI	RGCY	9 cut(s)	313, 458, 600, 605, 626, 775, 803, 873, 942
CviKI_1	RGCY	9 cut(s)	313, 458, 600, 605, 626, 775, 803, 873, 942
CviQI	GTAC	2 cut(s)	86, 298
DdeI	CTNAG	7 cut(s)	105, 447, 519, 549, 627, 693, 702
DpnI	GATC	5 cut(s)	102, 210, 255, 510, 897
DpnII	GATC	5 cut(s)	100, 208, 253, 508, 895
Eam1104I	CTCTTC	3 cut(s)	18, 426, 465
EarI	CTCTTC	3 cut(s)	18, 426, 465
EciI	GGCGGA	1 cut(s)	946
Eco57I	CTGAAG	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	6 cut(s)	176, 419, 562, 814, 890, 952
FatI	CATG	6 cut(s)	172, 415, 558, 810, 886, 948
FauI	CCCGC	2 cut(s)	127, 615
FauNDI	CATATG	1 cut(s)	1014
FokI	GGATG	2 cut(s)	698, 827
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	775
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	6 cut(s)	176, 419, 562, 814, 890, 952
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	871
HinfI	GANTC	7 cut(s)	281, 535, 544, 668, 725, 883, 932
HphI	GGTGA	2 cut(s)	803, 937
Hpy166II	GTNNAC	2 cut(s)	77, 653
Hpy188I	TCNGA	6 cut(s)	189, 441, 450, 667, 703, 730
Hpy188III	TCNNGA	4 cut(s)	257, 548, 650, 887
Hpy8I	GTNNAC	2 cut(s)	77, 653
HpyAV	CCTTC	5 cut(s)	10, 22, 28, 715, 739
HpyCH4III	ACNGT	5 cut(s)	218, 638, 657, 821, 1029
HpyCH4IV	ACGT	2 cut(s)	982, 1003
HpyCH4V	TGCA	3 cut(s)	162, 562, 952
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 623
HpyF3I	CTNAG	7 cut(s)	105, 447, 519, 549, 627, 693, 702
HpySE526I	ACGT	2 cut(s)	982, 1003
Hsp92II	CATG	6 cut(s)	176, 419, 562, 814, 890, 952
Kzo9I	GATC	5 cut(s)	100, 208, 253, 508, 895
LguI	GCTCTTC	1 cut(s)	426
LpnPI	CCDG	6 cut(s)	102, 397, 414, 441, 561, 582
LweI	GCATC	4 cut(s)	583, 679, 707, 784
MaeII	ACGT	2 cut(s)	982, 1003
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	5 cut(s)	102, 210, 255, 510, 897
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	5 cut(s)	100, 208, 253, 508, 895
MboII	GAAGA	7 cut(s)	35, 413, 482, 518, 580, 583, 839
MluCI	AATT	1 cut(s)	991
MlyI	GAGTC	3 cut(s)	290, 529, 538
MmeI	TCCRAC	2 cut(s)	444, 843
MnlI	CCTC	9 cut(s)	13, 183, 238, 435, 460, 487, 490, 688, 761
MseI	TTAA	2 cut(s)	60, 854
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	602, 623
NdeI	CATATG	1 cut(s)	1014
NdeII	GATC	5 cut(s)	100, 208, 253, 508, 895
NlaIII	CATG	6 cut(s)	176, 419, 562, 814, 890, 952
NspI	RCATGY	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	886
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	668, 725, 883, 932
PfoI	TCCNGGA	1 cut(s)	427
PleI	GAGTC	3 cut(s)	289, 529, 538
PpsI	GAGTC	3 cut(s)	289, 529, 538
PsiI	TTATAA	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	773
RsaI	GTAC	2 cut(s)	87, 299
RsaNI	GTAC	2 cut(s)	86, 298
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	60, 854
Sau3AI	GATC	5 cut(s)	100, 208, 253, 508, 895
Sau96I	GGNCC	1 cut(s)	773
SchI	GAGTC	3 cut(s)	290, 529, 538
ScrFI	CCNGG	1 cut(s)	429
SfaNI	GCATC	4 cut(s)	583, 679, 707, 784
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	991
SsiI	CCGC	3 cut(s)	134, 622, 957
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	5 cut(s)	218, 638, 657, 821, 1029
TaiI	ACGT	2 cut(s)	985, 1006
TaqI	TCGA	2 cut(s)	533, 1024
TasI	AATT	1 cut(s)	991
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	4 cut(s)	668, 725, 883, 932
Tru1I	TTAA	2 cut(s)	60, 854
Tru9I	TTAA	2 cut(s)	60, 854
TscAI	CASTG	5 cut(s)	146, 223, 354, 826, 934
TspDTI	ATGAA	4 cut(s)	249, 467, 547, 1004
TspRI	CASTG	5 cut(s)	146, 223, 354, 826, 934
XceI	RCATGY	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.