Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002824

Physical Location & Seq

Genomic Coordinates Reverse (-)

24116675 .. 24119542

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G243000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCCGCCGAAGCAGCAATCGAAGGCCGATTTGGCGAAGAAGCAGAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAACAAGAGCAAGAATGTCCAGAAGTACGTTCAGACCCTCAAGCAGTCCGTCCAGCCCCAATCCGATCCTTCTAAGACCGCTGCTAAGAAAAAGAAGGAAGAAGATAAGGCTAAGGACAAGGAGCTGAATGAATTATTTAAGGTTGCTGTTAGTCAACCAAAAGTACCAGTTGGTGTTGATCCCAAGTCTATACTATGCGAGTTTTATAAAGCGGGGCAGTGTGCAAAAGGTTTCAAGTGCAAGTTCTCCCATGATTTGAATGTTCAGAGGAAAGGAGAAAAGATTGATATTTACAGTGATAAACGTGATCACGACACGATGGAGGAATGGGATCAAGAGACTTTGGAGAAGGTGGTGGAATCAAAGAAAAATGAATACCAGCAGAACAAACCGACTGATATTGTTTGTAAATATTTTCTGGAAGCAGTGGAGAAGAAACAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAAAATTGCCATTACAGACATGCTCTTCCTCCAGGATATGTTTTAAAGTCTCAGATGAAGGCTCTATTAGAGGAAGAGGCTGAAAAAATACCGATTGAGGAGGAGATCGAAAATCAGCGTGCTAAAGTGACGACTTCAACTCCTATGACTACTGAGTTGTTCATGCAATGGAAGAAGAAAAAGATGGCAGAAAGAGATGCCGGTTTGGCGGCAGAAATGGCAGAGCGGGCTAAAAATGACCGTATGAGTGGCCGTGAGCTATTTTTGTCAGATTCTAGCCTATTTGTGGACGATGTTGAGGCACATGAGAAGTACCAAAGAGATCAAGAACCTCCAGTTGCTGAACAGAAGGTCAGTGCCAATTCTAACAGAGATAGGCTTGGCGGTGGTGCCAAAGTTACCAATGATGATGATGACGACGAACTGGACATAGATGAGTTAAACGAGTTAGAAGCAAGCTTATCTAAGGTAACAATTCAGGAGCCGGACACTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DFRP_C

Protein Analysis

353

Amino Acids

40.21

Weight (kDa)

6.12

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20280
fragaria_vesca	FvH4_6g15130 FvH4_7g20460
malus_domestica	MD01G1113600.v1.1 MD04G1114100.v1.1 MD07G1181600.v1.1 MD12G1126400.v1.1
prunus_persica	Prupe.2G220500_v2.0.a1 Prupe.2G220500_v2.0.a1 Prupe.6G243000_v2.0.a1 Prupe.6G243000_v2.0.a1
pyrus_communis	pycom01g14240 pycom07g17440 pycom12g12450
rosa_chinensis	RchiOBHm_Chr1g0364371 RchiOBHm_Chr3g0468431
rosa_laevigata	RLG00000024429 RLG00000027487
rosa_multiflora	Rmu_co8470117.1_g000001 Rmu_sc0009489.1_g000006 Rmu_sc0014003.1_g000016 Rmu_sc0020046.1_g000005 Rmu_sc0040156.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292350 Rroxscaffold_6G00412770
rosa_rugosa	Rorug01G0315700 Rorug01G0315700 Rorug01G0315700 Rorug03G0095500
rosa_samantha	Rh1AG323800 Rh1BG286500 Rh1DG318000 Rh3AG143200 Rh3BG165600 Rh3DG165200
rosa_wichuraiana	Rw0G014190 Rw1G028690 Rw3G013530 Rw3G013560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	947
AccBSI	CCGCTC	1 cut(s)	784
AciI	CCGC	6 cut(s)	5, 162, 296, 767, 784, 942
AclWI	GGATC	3 cut(s)	143, 257, 423
AcoI	YGGCCR	1 cut(s)	808
AfaI	GTAC	3 cut(s)	110, 249, 872
AfiI	CCNNNNNNNGG	2 cut(s)	554, 844
AgsI	TTSAA	3 cut(s)	319, 343, 696
AjnI	CCWGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	3 cut(s)	208, 817, 1017
AluI	AGCT	3 cut(s)	208, 817, 1017
Alw26I	GTCTC	2 cut(s)	416, 612
AlwI	GGATC	3 cut(s)	143, 257, 423
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	2 cut(s)	24, 808
ApeKI	GCWGC	3 cut(s)	13, 164, 1052
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
BanI	GGYRCC	1 cut(s)	947
BanII	GRGCYC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	25, 151, 1039
BccI	CCATC	2 cut(s)	397, 736
BceAI	ACGGC	1 cut(s)	795
BciT130I	CCWGG	1 cut(s)	591
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	416, 612
BfaI	CTAG	1 cut(s)	834
BglI	GCCNNNNNGGC	2 cut(s)	32, 764
BisI	GCNGC	5 cut(s)	5, 14, 165, 768, 1053
BlsI	GCNGC	5 cut(s)	6, 15, 166, 769, 1054
Bme1390I	CCNGG	1 cut(s)	591
BmiI	GGNNCC	2 cut(s)	949, 1041
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	1 cut(s)	745
BpmI	CTGGAG	2 cut(s)	573, 876
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	2 cut(s)	59, 107
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 844
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	3 cut(s)	251, 893, 987
Bse3DI	GCAATG	1 cut(s)	731
BseBI	CCWGG	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	554, 844
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	623, 702
BseNI	ACTGG	3 cut(s)	251, 893, 987
BseRI	GAGGAG	2 cut(s)	671, 674
BseXI	GCAGC	3 cut(s)	25, 151, 1039
BshFI	GGCC	2 cut(s)	26, 810
BshNI	GGYRCC	1 cut(s)	947
BsiSI	CCGG	2 cut(s)	759, 1043
BslI	CCNNNNNNNGG	2 cut(s)	554, 844
BsmAI	GTCTC	2 cut(s)	416, 612
BsnI	GGCC	2 cut(s)	26, 810
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
BspACI	CCGC	6 cut(s)	5, 162, 296, 767, 784, 942
BspANI	GGCC	2 cut(s)	26, 810
BspCNI	CTCAG	2 cut(s)	622, 703
BspLI	GGNNCC	2 cut(s)	949, 1041
BspPI	GGATC	3 cut(s)	143, 257, 423
BspQI	GCTCTTC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	947
BsrBI	CCGCTC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	758
BsrI	ACTGG	3 cut(s)	251, 893, 987
BssAI	RCCGGY	1 cut(s)	758
BssMI	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	2 cut(s)	380, 800
Bst6I	CTCTTC	2 cut(s)	588, 627
BstC8I	GCNNGC	3 cut(s)	678, 786, 1015
BstDEI	CTNAG	6 cut(s)	156, 168, 195, 609, 711, 1023
BstKTI	GATC	7 cut(s)	51, 151, 265, 394, 418, 666, 883
BstMAI	GTCTC	2 cut(s)	416, 612
BstMBI	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 13, 32, 764, 776, 785
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	589
BstV1I	GCAGC	3 cut(s)	25, 151, 1039
BsuRI	GGCC	2 cut(s)	26, 810
BtsI	GCAGTG	3 cut(s)	308, 516, 1047
BtsIMutI	CAGTG	5 cut(s)	308, 385, 516, 919, 1047
Cac8I	GCNNGC	3 cut(s)	678, 786, 1015
CaiI	CAGNNNCTG	1 cut(s)	899
Cfr10I	RCCGGY	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	109, 248, 871
CviAII	CATG	4 cut(s)	335, 578, 721, 863
CviQI	GTAC	3 cut(s)	109, 248, 871
DdeI	CTNAG	6 cut(s)	156, 168, 195, 609, 711, 1023
DpnI	GATC	7 cut(s)	50, 150, 264, 393, 417, 665, 882
DpnII	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
DraI	TTTAAA	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	2 cut(s)	588, 627
EarI	CTCTTC	2 cut(s)	588, 627
Eco24I	GRGCYC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	4 cut(s)	338, 581, 724, 866
FatI	CATG	4 cut(s)	334, 577, 720, 862
FauI	CCCGC	2 cut(s)	289, 777
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	5, 14, 165, 768, 1053
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	5 cut(s)	5, 14, 165, 768, 1053
FspBI	CTAG	1 cut(s)	834
GluI	GCNGC	5 cut(s)	5, 14, 165, 768, 1053
GsuI	CTGGAG	2 cut(s)	573, 876
HaeIII	GGCC	2 cut(s)	26, 810
HapII	CCGG	2 cut(s)	759, 1043
Hin1II	CATG	4 cut(s)	338, 581, 724, 866
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	1015
HinfI	GANTC	2 cut(s)	443, 830
HpaII	CCGG	2 cut(s)	759, 1043
Hpy166II	GTNNAC	2 cut(s)	239, 847
Hpy188I	TCNGA	5 cut(s)	117, 148, 351, 612, 829
Hpy188III	TCNNGA	7 cut(s)	76, 103, 395, 419, 503, 884, 1037
Hpy8I	GTNNAC	2 cut(s)	239, 847
Hpy99I	CGWCG	1 cut(s)	980
HpyAV	CCTTC	7 cut(s)	16, 76, 162, 172, 427, 610, 901
HpyCH4III	ACNGT	2 cut(s)	380, 800
HpyCH4IV	ACGT	2 cut(s)	111, 388
HpyCH4V	TGCA	3 cut(s)	308, 324, 724
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 13, 32, 764, 776, 785
HpyF3I	CTNAG	6 cut(s)	156, 168, 195, 609, 711, 1023
HpySE526I	ACGT	2 cut(s)	111, 388
Hsp92II	CATG	4 cut(s)	338, 581, 724, 866
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	2 cut(s)	205, 1039
Lsp1109I	GCAGC	3 cut(s)	25, 151, 1039
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	2 cut(s)	111, 388
MaeIII	GTNAC	3 cut(s)	685, 955, 1027
MalI	GATC	7 cut(s)	50, 150, 264, 393, 417, 665, 882
MbiI	CCGCTC	1 cut(s)	784
MboI	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
MboII	GAAGA	9 cut(s)	49, 58, 194, 197, 529, 575, 644, 742, 745
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	4 cut(s)	215, 562, 919, 1032
MseI	TTAA	4 cut(s)	222, 602, 998, 1057
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	2 cut(s)	759, 1043
MspR9I	CCNGG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	6 cut(s)	10, 13, 32, 764, 776, 785
NdeII	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
NlaIII	CATG	4 cut(s)	338, 581, 724, 866
NlaIV	GGNNCC	2 cut(s)	949, 1041
NmuCI	GTSAC	1 cut(s)	685
NspI	RCATGY	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	443, 830
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	5 cut(s)	6, 15, 166, 769, 1054
PsiI	TTATAA	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	2 cut(s)	949, 1041
PstNI	CAGNNNCTG	1 cut(s)	899
RsaI	GTAC	3 cut(s)	110, 249, 872
RsaNI	GTAC	3 cut(s)	109, 248, 871
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	4 cut(s)	222, 602, 998, 1057
SatI	GCNGC	5 cut(s)	5, 14, 165, 768, 1053
Sau3AI	GATC	7 cut(s)	48, 148, 262, 391, 415, 663, 880
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	745
SmlI	CTYRAG	2 cut(s)	74, 122
SmoI	CTYRAG	2 cut(s)	74, 122
Sse9I	AATT	4 cut(s)	215, 562, 919, 1032
SsiI	CCGC	6 cut(s)	5, 162, 296, 767, 784, 942
SspI	AATATT	1 cut(s)	497
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	380, 800
TaiI	ACGT	2 cut(s)	114, 391
TaqI	TCGA	2 cut(s)	20, 666
TasI	AATT	4 cut(s)	215, 562, 919, 1032
TauI	GCSGC	2 cut(s)	7, 770
TfiI	GAWTC	2 cut(s)	443, 830
Tru1I	TTAA	4 cut(s)	222, 602, 998, 1057
Tru9I	TTAA	4 cut(s)	222, 602, 998, 1057
TscAI	CASTG	5 cut(s)	308, 385, 516, 919, 1054
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	3 cut(s)	13, 164, 1052
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	4 cut(s)	228, 471, 629, 709
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	5 cut(s)	308, 385, 516, 919, 1054
XceI	RCATGY	1 cut(s)	581
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.