RLG00000024428

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015460
Physical Location & Seq
Forward (+)
35740484 .. 35741924
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024428

Sequence Viewer

Length: 444 bp
ATGGATATTCAAGCTCGACTGGGAAGCGTAGCTTCTCATCACTTTTTCTGGATCACTCCAAAACGCAAACCTTCATCTTCTTCTTCTTCTTCTCGTTCTTCGCCATTGAAACCTTTCTGCAACAAAAGAGGCTCCAAAGAACCCCAGCAAAACGGTGACAGTGGTAATGGTGATAAATTCTCAACAGATTGGGACAAGGCCTGGTCAAAGATCAAGAAGCAAAAGAAGAACAAGAAGAGCTTCTTCTCGAAATTCTCTCCAAACAAGTATGTGACCTGGGATCCCAGGCCTTCTGATTATCCACTCTCTGAGGAAGTTGATCCCATCAAGAGGACAGAGAGGTCCAACCTTATGTTATGGACTAGCCCAAGGTTTACTCTAGCAGGAGCCATTGTAATTGTCACCTTCCTCTTGGTTTACACCATTATTGTACCATCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.8

Weight (kDa)

10.17

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53470 AT3G53470
fragaria_vesca FvH4_6g15150 FvH4_6g15150
malus_domestica MD12G1126200.v1.1
prunus_persica Prupe.6G242800_v2.0.a1
pyrus_communis pycom12g12440
rosa_chinensis RchiOBHm_Chr3g0468451
rosa_laevigata RLG00000024428
rosa_multiflora Rmu_sc0040156.1_g000005
rosa_roxburghii Rroxscaffold_6G00412750
rosa_rugosa Rorug03G0095500
rosa_samantha Rh3AG143800 Rh3BG165800 Rh3DG165400
rosa_wichuraiana Rw3G013570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 340
AclWI GGATC 4 cut(s) 59, 275, 288, 314
AcsI RAATTY 2 cut(s) 176, 251
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 2 cut(s) 11, 109
AjnI CCWGG 3 cut(s) 200, 275, 284
AluBI AGCT 3 cut(s) 14, 32, 240
AluI AGCT 3 cut(s) 14, 32, 240
AlwI GGATC 4 cut(s) 59, 275, 288, 314
AoxI GGCC 2 cut(s) 198, 287
ApoI RAATTY 2 cut(s) 176, 251
Asp700I GAANNNNTTC 2 cut(s) 113, 239
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 167, 182, 394
AvaII GGWCC 1 cut(s) 342
BamHI GGATCC 1 cut(s) 280
BccI CCATC 2 cut(s) 332, 442
BciT130I CCWGG 3 cut(s) 202, 277, 286
BfaI CTAG 2 cut(s) 363, 380
Bme1390I CCNGG 3 cut(s) 202, 277, 286
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 3 cut(s) 133, 282, 388
BmrFI CCNGG 3 cut(s) 202, 277, 286
BmrI ACTGGG 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 276, 284, 368
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 3 cut(s) 202, 277, 286
BseDI CCNNGG 3 cut(s) 276, 284, 368
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 144
BshFI GGCC 2 cut(s) 200, 289
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 200, 289
Bsp143I GATC 4 cut(s) 51, 210, 280, 319
BspANI GGCC 2 cut(s) 200, 289
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 133, 282, 388
BspPI GGATC 4 cut(s) 59, 275, 288, 314
BspQI GCTCTTC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 3 cut(s) 276, 284, 368
BssMI GATC 4 cut(s) 51, 210, 280, 319
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 3 cut(s) 202, 277, 286
Bst4CI ACNGT 2 cut(s) 155, 161
Bst6I CTCTTC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 4 cut(s) 54, 213, 283, 322
BstMBI GATC 4 cut(s) 51, 210, 280, 319
BstNI CCWGG 3 cut(s) 202, 277, 286
BstSCI CCNGG 3 cut(s) 200, 275, 284
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 200, 289
BtsIMutI CAGTG 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 431
CviJI RGCY 8 cut(s) 14, 32, 132, 200, 240, 289, 366, 389
CviKI_1 RGCY 8 cut(s) 14, 32, 132, 200, 240, 289, 366, 389
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 1 cut(s) 309
DpnI GATC 4 cut(s) 53, 212, 282, 321
DpnII GATC 4 cut(s) 51, 210, 280, 319
DrdI GACNNNNNNGTC 1 cut(s) 340
DseDI GACNNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 2 cut(s) 200, 289
Eco47I GGWCC 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 200, 275, 284
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaiI YATR 3 cut(s) 270, 353, 358
FalI AAGNNNNNCTT 6 cut(s) 16, 48, 224, 256, 227, 259
FaqI GGGAC 1 cut(s) 206
FspBI CTAG 2 cut(s) 363, 380
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 2 cut(s) 200, 289
HphI GGTGA 3 cut(s) 167, 182, 394
Hpy166II GTNNAC 2 cut(s) 375, 418
Hpy188I TCNGA 2 cut(s) 295, 310
Hpy188III TCNNGA 4 cut(s) 49, 214, 247, 328
Hpy8I GTNNAC 2 cut(s) 375, 418
HpyAV CCTTC 3 cut(s) 81, 300, 415
HpyCH4III ACNGT 2 cut(s) 155, 161
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 309
Kzo9I GATC 4 cut(s) 51, 210, 280, 319
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 137, 386
MaeI CTAG 2 cut(s) 363, 380
MaeIII GTNAC 3 cut(s) 155, 271, 400
MalI GATC 4 cut(s) 53, 212, 282, 321
MboI GATC 4 cut(s) 51, 210, 280, 319
MboII GAAGA 9 cut(s) 69, 72, 75, 78, 81, 90, 235, 238, 247
MflI RGATCY 1 cut(s) 280
MluCI AATT 3 cut(s) 176, 251, 396
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 5 cut(s) 122, 304, 324, 333, 419
MroXI GAANNNNTTC 2 cut(s) 113, 239
MspR9I CCNGG 3 cut(s) 202, 277, 286
MvaI CCWGG 3 cut(s) 202, 277, 286
NdeII GATC 4 cut(s) 51, 210, 280, 319
NlaIV GGNNCC 3 cut(s) 133, 282, 388
NmuCI GTSAC 3 cut(s) 155, 271, 400
PceI AGGCCT 2 cut(s) 200, 289
PciSI GCTCTTC 1 cut(s) 230
PdmI GAANNNNTTC 2 cut(s) 113, 239
Psp6I CCWGG 3 cut(s) 200, 275, 284
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 3 cut(s) 200, 275, 284
PspN4I GGNNCC 3 cut(s) 133, 282, 388
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 230
Sau3AI GATC 4 cut(s) 51, 210, 280, 319
Sau96I GGNCC 1 cut(s) 342
ScrFI CCNGG 3 cut(s) 202, 277, 286
SinI GGWCC 1 cut(s) 342
Sse9I AATT 3 cut(s) 176, 251, 396
SseBI AGGCCT 2 cut(s) 200, 289
SspMI CTAG 2 cut(s) 363, 380
StuI AGGCCT 2 cut(s) 200, 289
StyD4I CCNGG 3 cut(s) 200, 275, 284
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 2 cut(s) 155, 161
TaqI TCGA 2 cut(s) 16, 248
TasI AATT 3 cut(s) 176, 251, 396
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 3 cut(s) 155, 271, 400
Tsp45I GTSAC 3 cut(s) 155, 271, 400
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 2 cut(s) 176, 251
XmnI GAANNNNTTC 2 cut(s) 113, 239
XspI CTAG 2 cut(s) 363, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.