pycom12g12440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015460
Physical Location & Seq
Forward (+)
14897358 .. 14898577
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g12440.1

Sequence Viewer

Length: 396 bp
ATGATCAACCTGCAGCAGGTTTGCATTGGATTGGAATATTCTTTTGGTTTCTGGGATGTGCTGCTGCAAATGGATATTCAAGCTCGAATAGGAAGCTTATCATCCTCCTCTCACAACTTTCGGACCTCTCGAAAACATAACTCTGCATCTTCTTCTCCATCTTCTTGCTACTCGCCATTGAAGCCCTTGTGTTCCAGAAGGGATTCTCAGGAGCCCCAACAAAACGGTGACAACAATGGTGATAAATTTTCAACAGATTGGGACAAGGCATGGGCAAACATAAGGAAACAAGGCAAAAACAAAAAGAAGGGTGGCTTCTTCGCAGGGTTTTCTTCTCCAAACAAGTACGTGAGCTGGAACCCTAGGCAGTCCAATTACCCACTGTCTGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.82

Weight (kDa)

9.4

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53470 AT3G53470
fragaria_vesca FvH4_6g15150 FvH4_6g15150
malus_domestica MD12G1126200.v1.1
prunus_persica Prupe.6G242800_v2.0.a1
pyrus_communis pycom12g12440
rosa_chinensis RchiOBHm_Chr3g0468451
rosa_laevigata RLG00000024428
rosa_multiflora Rmu_sc0040156.1_g000005
rosa_roxburghii Rroxscaffold_6G00412750
rosa_rugosa Rorug03G0095500
rosa_samantha Rh3AG143800 Rh3BG165800 Rh3DG165400
rosa_wichuraiana Rw3G013570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 7, 18
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 80, 181, 252
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 83, 96, 354
AluI AGCT 3 cut(s) 83, 96, 354
ApeKI GCWGC 3 cut(s) 13, 61, 64
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 202
AspA2I CCTAGG 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 239, 251
AvaII GGWCC 1 cut(s) 123
AvrII CCTAGG 1 cut(s) 362
BanII GRGCYC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 25, 48, 51
BccI CCATC 1 cut(s) 166
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 11
BfuAI ACCTGC 2 cut(s) 7, 18
BisI GCNGC 3 cut(s) 14, 62, 65
BlnI CCTAGG 1 cut(s) 362
BlsI GCNGC 3 cut(s) 15, 63, 66
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 213, 359
BmsI GCATC 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 61, 101
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 221, 378
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 3 cut(s) 25, 48, 51
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 2 cut(s) 220, 379
BspLI GGNNCC 2 cut(s) 213, 359
BspMAI CTGCAG 1 cut(s) 15
BspMI ACCTGC 2 cut(s) 7, 18
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 227, 384
BstBAI YACGTR 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 207, 387
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 61, 101
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 25, 48, 51
BtsCI GGATG 2 cut(s) 61, 101
BtsIMutI CAGTG 1 cut(s) 380
BveI ACCTGC 2 cut(s) 7, 18
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 346
CviAII CATG 1 cut(s) 270
CviJI RGCY 6 cut(s) 83, 96, 184, 214, 315, 354
CviKI_1 RGCY 6 cut(s) 83, 96, 184, 214, 315, 354
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 207, 387
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 1 cut(s) 273
FaiI YATR 3 cut(s) 138, 271, 281
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 275
FatI CATG 1 cut(s) 269
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 14, 62, 65
FokI GGATG 2 cut(s) 68, 88
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 14, 62, 65
FspBI CTAG 1 cut(s) 363
GluI GCNGC 3 cut(s) 14, 62, 65
Hin1II CATG 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 94
HinfI GANTC 1 cut(s) 203
HphI GGTGA 2 cut(s) 239, 251
Hpy188I TCNGA 2 cut(s) 123, 388
Hpy188III TCNNGA 3 cut(s) 129, 195, 209
HpyAV CCTTC 2 cut(s) 192, 301
HpyCH4III ACNGT 2 cut(s) 227, 384
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 13, 24, 67, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 207, 387
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 7 cut(s) 2, 23, 37, 194, 208, 309, 340
Lsp1109I GCAGC 3 cut(s) 25, 48, 51
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 5 cut(s) 141, 144, 153, 310, 324
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 245, 373
MnlI CCTC 4 cut(s) 115, 118, 136, 382
MroXI GAANNNNTTC 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 2 cut(s) 213, 359
NmuCI GTSAC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 3 cut(s) 15, 63, 66
Ppu21I YACGTR 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 213, 359
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 15
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SatI GCNGC 3 cut(s) 14, 62, 65
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 216
SetI ASST 7 cut(s) 12, 21, 85, 98, 128, 351, 356
SfaNI GCATC 1 cut(s) 155
SfcI CTRYAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 123
Sse9I AATT 2 cut(s) 245, 373
SspI AATATT 1 cut(s) 38
SspMI CTAG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 227, 384
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 85, 130
TasI AATT 2 cut(s) 245, 373
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 3 cut(s) 13, 61, 64
Tsp45I GTSAC 1 cut(s) 227
TspRI CASTG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 1 cut(s) 245
XmaJI CCTAGG 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.