AT3G54120

reticulon family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009580
Physical Location & Seq
Reverse (-)
20041126 .. 20042340
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54120.1

Sequence Viewer

Length: 612 bp
ATGAGTTCTTCTTCGGACAAGTTGTTCAACAGAGACAGGACAATACATGAGATTCTGGGAGGAGGCATTGTTGCAGATGTGATGCTGTGGAGGAAGAAGAATGTGAGTGTTGGTATAGTTACAGTGACAATAGCTTCATGGATGGTGTTTGAGGCATTTGCTTACACTATCTTTACTCTTATTTCAAGTGTTCTTCTTCTCTTGCTCTCTATTCTCTTCCTCTGGTCCAAATCTGCTTCCATTCTCAACAGGCCATCACCGCCGTTACCGGAGTTTCAAATAAGTGAAGCGATGGCGGAAGAAGCTTCGATATGGTTACGTATTCATGTGAACAAGCTACTCCAAGTTTCGCATGACATTGCAATGGCAAGAGACTCAGAGTTGTATACCAAAGTAGCAGTGTCACTGTTTCTTCTCTCATTGATCGGAAGTCTCATGGATTTTCAGACACTTTGCCACACCAGCGTTTTGGTGGTTATGACGGTTCCAGCTTTCTATGAGAGATATGAGGATTACATTGTTGGCTCTATTGAGTTTATCTGCAACAAAACTAGAGAGCTTTACCTTAGACTCGAGATATGGGCTAATCCGGAAAATAAGAAACTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

203

Amino Acids

23.05

Weight (kDa)

6.09

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 24 - 176 1.3e-44 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 2 cut(s) 260, 296
AgsI TTSAA 3 cut(s) 28, 186, 278
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 6 cut(s) 134, 305, 337, 491, 559, 609
AluI AGCT 6 cut(s) 134, 305, 337, 491, 559, 609
Alw26I GTCTC 3 cut(s) 27, 366, 437
Ama87I CYCGRG 1 cut(s) 572
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 225
BccI CCATC 3 cut(s) 136, 262, 286
BceAI ACGGC 1 cut(s) 247
BcoDI GTCTC 3 cut(s) 27, 366, 437
BfaI CTAG 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 486
BmsI GCATC 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 320
BsaWI WCCGGW 2 cut(s) 268, 589
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse3DI GCAATG 2 cut(s) 357, 369
BseAI TCCGGA 1 cut(s) 589
BseGI GGATG 1 cut(s) 147
BseMI GCAATG 2 cut(s) 357, 369
BseMII CTCAG 2 cut(s) 390, 596
BseRI GAGGAG 1 cut(s) 75
BshFI GGCC 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 2 cut(s) 269, 590
BsmAI GTCTC 3 cut(s) 27, 366, 437
BsnI GGCC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 572
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 1 cut(s) 423
BspACI CCGC 2 cut(s) 260, 296
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 389, 597
BspEI TCCGGA 1 cut(s) 589
BspLI GGNNCC 1 cut(s) 486
BsrDI GCAATG 2 cut(s) 357, 369
BssMI GATC 1 cut(s) 423
BssNAI GTATAC 1 cut(s) 387
Bst1107I GTATAC 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 124, 408, 484
Bst6I CTCTTC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 376, 566, 605
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 426
BstMAI GTCTC 3 cut(s) 27, 366, 437
BstMBI GATC 1 cut(s) 423
BstMWI GCNNNNNNNGC 3 cut(s) 259, 302, 462
BstSNI TACGTA 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 469
BstZ17I GTATAC 1 cut(s) 387
BsuRI GGCC 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 3 cut(s) 129, 404, 405
Cfr13I GGNCC 1 cut(s) 225
CviAII CATG 5 cut(s) 47, 138, 326, 353, 436
CviJI RGCY 9 cut(s) 134, 253, 305, 337, 491, 525, 559, 584, 609
CviKI_1 RGCY 9 cut(s) 134, 253, 305, 337, 491, 525, 559, 584, 609
DdeI CTNAG 3 cut(s) 376, 566, 605
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 311
Eco105I TACGTA 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 572
FaeI CATG 5 cut(s) 50, 141, 329, 356, 439
FatI CATG 5 cut(s) 46, 137, 325, 352, 435
FblI GTMKAC 1 cut(s) 386
FokI GGATG 1 cut(s) 154
FspBI CTAG 1 cut(s) 552
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 269, 590
Hin1II CATG 5 cut(s) 50, 141, 329, 356, 439
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 3 cut(s) 52, 374, 570
HpaII CCGG 2 cut(s) 269, 590
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 331, 387
Hpy188I TCNGA 4 cut(s) 16, 379, 428, 447
Hpy188III TCNNGA 2 cut(s) 574, 590
Hpy8I GTNNAC 2 cut(s) 331, 387
HpyCH4III ACNGT 3 cut(s) 124, 408, 484
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 74, 362, 543
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 302, 462
HpyF3I CTNAG 3 cut(s) 376, 566, 605
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 5 cut(s) 50, 141, 329, 356, 439
Kpn2I TCCGGA 1 cut(s) 589
Kzo9I GATC 1 cut(s) 423
LpnPI CCDG 8 cut(s) 22, 41, 208, 235, 282, 475, 501, 603
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 5 cut(s) 118, 124, 264, 315, 402
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 8 cut(s) 3, 106, 109, 185, 188, 208, 311, 404
MlyI GAGTC 2 cut(s) 368, 564
MnlI CCTC 6 cut(s) 53, 56, 84, 145, 230, 502
MroI TCCGGA 1 cut(s) 589
MslI CAYNNNNRTG 1 cut(s) 362
MspI CCGG 2 cut(s) 269, 590
MwoI GCNNNNNNNGC 3 cut(s) 259, 302, 462
NdeII GATC 1 cut(s) 423
NlaIII CATG 5 cut(s) 50, 141, 329, 356, 439
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 2 cut(s) 124, 402
PaeR7I CTCGAG 1 cut(s) 572
PfeI GAWTC 1 cut(s) 52
PleI GAGTC 2 cut(s) 368, 564
PpsI GAGTC 2 cut(s) 368, 564
Ppu21I YACGTR 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 362
Sau3AI GATC 1 cut(s) 423
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 2 cut(s) 368, 564
SetI ASST 8 cut(s) 136, 307, 322, 339, 493, 561, 567, 611
SfaNI GCATC 1 cut(s) 72
Sfr274I CTCGAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SnaBI TACGTA 1 cut(s) 320
SsiI CCGC 2 cut(s) 260, 296
SspMI CTAG 1 cut(s) 552
TaaI ACNGT 3 cut(s) 124, 408, 484
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 308, 573
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 3 cut(s) 129, 405, 411
TseFI GTSAC 2 cut(s) 124, 402
Tsp45I GTSAC 2 cut(s) 124, 402
TspDTI ATGAA 2 cut(s) 126, 314
TspRI CASTG 3 cut(s) 129, 405, 411
VpaK11BI GGWCC 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.