Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009580

Physical Location & Seq

Genomic Coordinates Reverse (-)

17501040 .. 17502345

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACTTCATCTGAAAGGTTGTTCAACAGGAAAAGAACACTTCATGAGATCCTTGGAGGAGGTCTTGTTGCAGATGTGATTCTGTGGAGGCAGAAAAATGTGACTTTGGGGATACTGCTAGTAACTTTATCTGTTTGGGTGGTGTTTGAGAAGTCTGGTTACACTCTGCTGTCACTTGGCTCAAGTGTTCTCCTCCTCCTCATGACCACTCTCTTTCTCTGGGCTAAATCTGCTGCCATTCTTAACCGACCAGCTCCTCCCCTGCCTAAATTGCATTTATCAGAAGAAATGGTAAACGAAATGGCATCTTTCATCCGCATTCATGTAAACGCTTTGCTCTCGGCTTTCCAAGATATTTCTCTGGGAAAGGACTCAAGGTCATTCTTCAAAGTAGCTGCATCCCTCTTGGTGATTTACCTTGTTGGTGGCTTGACTGATTTTCTTACTTTGAGCTACACCAGTCTTGCAATCGTTCTAACAGTTCCAGCGCTCTACGAGAGGTGTGAAGATTACGTGGACAAATATGTCATGATGGGGTACCGGAAATTGCTGCAGTTGTACGTTAAACTAGATTATGAGTATGTAAACAGATTTCAACACGAGGATTTGGAGAAGAAGAAGCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

210

Amino Acids

23.75

Weight (kDa)

9.08

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54120
fragaria_vesca	FvH4_6g12180 FvH4_6g12180
malus_domestica	MD04G1146100.v1.1 MD12G1159300.v1.1
prunus_persica	Prupe.6G269700_v2.0.a1 Prupe.6G269700_v2.0.a1 Prupe.6G269700_v2.0.a1
pyrus_communis	pycom04g13170 pycom12g15110
rosa_chinensis	RchiOBHm_Chr3g0463981
rosa_laevigata	RLG00000024730
rosa_multiflora	Rmu_sc0006492.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416090
rosa_rugosa	Rorug03G0069700 Rorug03G0069700 Rorug03G0069800
rosa_samantha	Rh3AG126700 Rh3BG130900 Rh3CG133200 Rh3DG132100
rosa_wichuraiana	Rw3G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	537
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	43
AfaI	GTAC	2 cut(s)	539, 560
AfeI	AGCGCT	1 cut(s)	489
AgsI	TTSAA	3 cut(s)	25, 388, 596
AhdI	GACNNNNNGTC	1 cut(s)	376
AluBI	AGCT	4 cut(s)	254, 395, 453, 622
AluI	AGCT	4 cut(s)	254, 395, 453, 622
AlwI	GGATC	1 cut(s)	43
Aor51HI	AGCGCT	1 cut(s)	489
ApeKI	GCWGC	3 cut(s)	233, 395, 550
Asp718I	GGTACC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	490
AsuHPI	GGTGA	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BauI	CACGAG	1 cut(s)	599
BbvI	GCAGC	3 cut(s)	220, 382, 537
BccI	CCATC	1 cut(s)	526
BciVI	GTATCC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	119, 569
BfmI	CTRYAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	105
BisI	GCNGC	3 cut(s)	234, 396, 551
BlsI	GCNGC	3 cut(s)	235, 397, 552
BmeRI	GACNNNNNGTC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	539
BmsI	GCATC	2 cut(s)	314, 407
BpuEI	CTTGAG	2 cut(s)	166, 358
BsaAI	YACGTR	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	540
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse1I	ACTGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	312, 398
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	5 cut(s)	72, 182, 185, 188, 246
BseXI	GCAGC	3 cut(s)	220, 382, 537
BshNI	GGYRCC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	316
BspHI	TCATGA	3 cut(s)	43, 201, 528
BspLI	GGNNCC	1 cut(s)	539
BspMAI	CTGCAG	1 cut(s)	555
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	481
BstBAI	YACGTR	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	623
BstF5I	GGATG	2 cut(s)	312, 398
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 271
BstSFI	CTRYAG	1 cut(s)	551
BstV1I	GCAGC	3 cut(s)	220, 382, 537
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	312, 398
CciI	TCATGA	3 cut(s)	43, 201, 528
CfoI	GCGC	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	538, 559
CviAII	CATG	4 cut(s)	44, 202, 323, 529
CviJI	RGCY	8 cut(s)	180, 224, 254, 344, 395, 429, 453, 622
CviKI_1	RGCY	8 cut(s)	180, 224, 254, 344, 395, 429, 453, 622
CviQI	GTAC	2 cut(s)	538, 559
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	524
DriI	GACNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1105I	GACNNNNNGTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	4 cut(s)	47, 205, 326, 532
FaiI	YATR	7 cut(s)	45, 203, 324, 525, 530, 576, 582
FatI	CATG	4 cut(s)	43, 201, 322, 528
Fnu4HI	GCNGC	3 cut(s)	234, 396, 551
FokI	GGATG	2 cut(s)	299, 385
Fsp4HI	GCNGC	3 cut(s)	234, 396, 551
FspBI	CTAG	2 cut(s)	119, 569
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	234, 396, 551
HaeII	RGCGCY	1 cut(s)	491
HapII	CCGG	1 cut(s)	541
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	4 cut(s)	47, 205, 326, 532
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	2 cut(s)	79, 371
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	4 cut(s)	295, 328, 517, 586
Hpy188I	TCNGA	2 cut(s)	13, 283
Hpy188III	TCNNGA	3 cut(s)	44, 202, 529
Hpy8I	GTNNAC	4 cut(s)	295, 328, 517, 586
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	2 cut(s)	513, 561
HpyCH4V	TGCA	5 cut(s)	71, 274, 398, 467, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 271
HpyF3I	CTNAG	1 cut(s)	623
HpySE526I	ACGT	2 cut(s)	513, 561
Hsp92II	CATG	4 cut(s)	47, 205, 326, 532
HspAI	GCGC	1 cut(s)	488
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	9 cut(s)	13, 141, 205, 264, 275, 347, 472, 498, 554
Lsp1109I	GCAGC	3 cut(s)	220, 382, 537
LweI	GCATC	2 cut(s)	314, 407
MaeI	CTAG	2 cut(s)	119, 569
MaeII	ACGT	2 cut(s)	513, 561
MaeIII	GTNAC	4 cut(s)	100, 121, 158, 171
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	5 cut(s)	296, 376, 518, 625, 628
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	2 cut(s)	269, 545
MlyI	GAGTC	1 cut(s)	365
MseI	TTAA	2 cut(s)	243, 564
MspI	CCGG	1 cut(s)	541
Mva1269I	GAATGC	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	230, 271
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	47, 205, 326, 532
NlaIV	GGNNCC	1 cut(s)	539
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	100, 171
PagI	TCATGA	3 cut(s)	43, 201, 528
PctI	GAATGC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	235, 397, 552
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Ppu21I	YACGTR	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	539
PstI	CTGCAG	1 cut(s)	555
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	2 cut(s)	539, 560
RsaNI	GTAC	2 cut(s)	538, 559
SaqAI	TTAA	2 cut(s)	243, 564
SatI	GCNGC	3 cut(s)	234, 396, 551
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	365
SfaNI	GCATC	2 cut(s)	314, 407
SfcI	CTRYAG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	181, 373
SmoI	CTYRAG	2 cut(s)	181, 373
Sse9I	AATT	2 cut(s)	269, 545
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	119, 569
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	2 cut(s)	516, 564
TasI	AATT	2 cut(s)	269, 545
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	243, 564
Tru9I	TTAA	2 cut(s)	243, 564
TseFI	GTSAC	2 cut(s)	100, 171
TseI	GCWGC	3 cut(s)	233, 395, 550
Tsp45I	GTSAC	2 cut(s)	100, 171
TspDTI	ATGAA	3 cut(s)	32, 301, 311
XspI	CTAG	2 cut(s)	119, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.