Rh3AG126700

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009580
Physical Location & Seq
Forward (+)
10942995 .. 10945646
2652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG126700.1

Sequence Viewer

Length: 450 bp
ATGGGTCTGATGAGCCTTGCTTTTTTGGATGATACAGTTGCAGATGTGATCTTGTGGAGGCAGAAAGATGTGACAATGGGGATACTGTTAGTAGCTTTAGCTGCTTGGGTGGTGTTTGAGAAGTCTGGTTATACATTGCTATCACTGGTCTCTAGTGTTCTTCTCCTCCTCTTTGTCATACTCTTTCTGTGGGCTAAATCGGCTGCCATTCTTAACCGACCAGCTCCACCCCTGCCTGAATTGCAGTTATCAGAAGAAATGGTGAATGAAGCTGCAGCTGTCATCCGGACTCATGTAAATGCTTTGCTTTTGGTTTCACAAGATATTTCTCTTGGTAAAGACTCGAGGTTGTTCTTCAAAGTAGCTGCTTACCTGCTGCTGATTTATTTTGTTGGTGGCTTGACTGATTTCCTGACTCTGAGCTACACCAGTAAGTATGAAACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

149

Amino Acids

16.46

Weight (kDa)

4.99

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 13 - 143 2.2e-39 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 285
AgsI TTSAA 1 cut(s) 358
AluBI AGCT 7 cut(s) 95, 101, 224, 272, 278, 365, 423
AluI AGCT 7 cut(s) 95, 101, 224, 272, 278, 365, 423
Alw26I GTCTC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 285
ApeKI GCWGC 6 cut(s) 101, 203, 272, 275, 365, 376
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 343
BbvI GCAGC 6 cut(s) 88, 190, 259, 287, 352, 363
BciVI GTATCC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 381
BfuI GTATCC 1 cut(s) 75
BisI GCNGC 6 cut(s) 102, 204, 273, 276, 366, 377
BlsI GCNGC 6 cut(s) 103, 205, 274, 277, 367, 378
BmeT110I CYCGRG 1 cut(s) 343
BsaI GGTCTC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 150, 429
Bse3DI GCAATG 1 cut(s) 134
BseAI TCCGGA 1 cut(s) 285
BseGI GGATG 2 cut(s) 34, 282
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 2 cut(s) 150, 429
BseRI GAGGAG 2 cut(s) 155, 158
BseXI GCAGC 6 cut(s) 88, 190, 259, 287, 352, 363
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 343
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 285
BspHI TCATGA 1 cut(s) 446
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 381
BspTNI GGTCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 2 cut(s) 150, 429
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 37, 87
BstDEI CTNAG 1 cut(s) 419
BstF5I GGATG 2 cut(s) 34, 282
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 101, 200, 241
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 6 cut(s) 88, 190, 259, 287, 352, 363
BsuI GTATCC 1 cut(s) 75
BtsCI GGATG 2 cut(s) 34, 282
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 381
CciI TCATGA 1 cut(s) 446
CviAII CATG 2 cut(s) 293, 447
DdeI CTNAG 1 cut(s) 419
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 343
FaeI CATG 2 cut(s) 296, 450
FaiI YATR 5 cut(s) 132, 179, 294, 438, 448
FatI CATG 2 cut(s) 292, 446
Fnu4HI GCNGC 6 cut(s) 102, 204, 273, 276, 366, 377
FokI GGATG 2 cut(s) 41, 269
Fsp4HI GCNGC 6 cut(s) 102, 204, 273, 276, 366, 377
FspBI CTAG 1 cut(s) 153
GluI GCNGC 6 cut(s) 102, 204, 273, 276, 366, 377
HapII CCGG 1 cut(s) 286
Hin1II CATG 2 cut(s) 296, 450
HinfI GANTC 3 cut(s) 289, 341, 415
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 9, 253, 420
Hpy188III TCNNGA 3 cut(s) 286, 412, 447
HpyCH4III ACNGT 2 cut(s) 37, 87
HpyCH4V TGCA 3 cut(s) 41, 244, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 200, 241
HpyF3I CTNAG 1 cut(s) 419
Hsp92II CATG 2 cut(s) 296, 450
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 9 cut(s) 111, 131, 234, 245, 249, 299, 386, 425, 442
Lsp1109I GCAGC 6 cut(s) 88, 190, 259, 287, 352, 363
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 3 cut(s) 152, 266, 346
MluCI AATT 1 cut(s) 239
MlyI GAGTC 3 cut(s) 283, 335, 409
MnlI CCTC 4 cut(s) 51, 176, 179, 339
MroI TCCGGA 1 cut(s) 285
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 101, 200, 241
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 296, 450
NmuCI GTSAC 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 343
PagI TCATGA 1 cut(s) 446
PkrI GCNGC 6 cut(s) 103, 205, 274, 277, 367, 378
PleI GAGTC 3 cut(s) 283, 335, 409
PpsI GAGTC 3 cut(s) 283, 335, 409
PspXI VCTCGAGB 1 cut(s) 343
PstI CTGCAG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 6 cut(s) 102, 204, 273, 276, 366, 377
Sau3AI GATC 1 cut(s) 48
SchI GAGTC 3 cut(s) 283, 335, 409
SetI ASST 9 cut(s) 97, 103, 226, 274, 280, 350, 367, 375, 425
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 1 cut(s) 239
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 37, 87
TaqI TCGA 1 cut(s) 344
TasI AATT 1 cut(s) 239
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 6 cut(s) 101, 203, 272, 275, 365, 376
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 282, 435
TspRI CASTG 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 343
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.