Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009580

Physical Location & Seq

Genomic Coordinates Forward (+)

5507801 .. 5510225

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0069800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAAAATTTCAGCAAATTGTCAGAAGAGATGGTGGTGCGAATCCTATCACGATTGCCTCCTAAATCTCTGATTCGATTCAGATGCGTCCGTAAGTTGTGGTACAACGTAATCAATAGTCCTAACTTCGTAGCCAAGAACCTTACTACTTCCAAGCACAATAAGTTCAGTTCATCCACTTGCATTCTTGCCAAGCACACTGTCCTCAAGGACAGCAACATTAAGGATAGGAATGAAATTTTGGAAGTCCTCAGGGACAACAGCATAGAAACAAAGAAAATTTTACTCTCATTGTGTAACCTTTGCAACGACAACGATGGTGATGACCCTAATCTTAATTATGTAGTCGACGACTTCACCGTTCCGCTTCCTTTAGGTCTACTTCCATTTAGTCTAGAGATTGCAGGTCATTGTGATGGGATCATTTGTCTAAATAATTCATTTCTTGATGACATAGTCTTGTGCAATCCAGCAACCAAAGAATCCAAACTTCTTCCGAAGTCCTGTCTTCTTCTCCCTCCTCGACATCCAAATGACTACGATGAAATAGAGTCTGATGTAAATGCTGTTGGATTCGGCTACGATTCCAAAGCTCAAGAATACAAGGTTGTTAGAATTGTATCATTTATTACTGGGGTTCATAAACCACTTCCTTCGAAAGCAGAAGTATATACCATTGGCACTAATTCTTGGCGAGAGATCACGGCTCAAACTGAAAGTCATGTTTTCTGGGCTCCTTCTTTTAAGTTGTTCTTGAAGGGATTTTATTTTTGGTGGGCATCAATCTGCCCACCAGAGCAGGAAATCATCCTCTCATTTGATATGAATGAGGAGCTGTTTCATGATATATATATTCCAGAGAGTGTCCGTCATGACATAGTTCGATGTAATAGAGGTCTTGCAGTGTGGAAAGAGTCCATTGCTCTTTTGGCTTACGGTGGAGACAGTGGAGCTCAATCTTTTGACATATGGGTAATCGATGACTTCGGTGTCTTTAAGAGTTCGTGGATAAAATACTTAACCATCGGACCTCTAGAAGGCATTTCGATTCCATTGATATTTTGGAAGAGTAACGAGTTTCTTATGGCTGCCACTGATGGACGTCTGGTGTCCTATAACCTTAGCACCCAAATGTTCAAGTATCTTCCTATTCATGGGGTGGAAGATCCACCATATATTCAAGCTGTTGTTTATGTAAATAGTATTGTTTCGGTCCATGCAAGCAACAAACTTGAGGGCATAAATAACTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

418

Amino Acids

47.34

Weight (kDa)

5.63

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 43	3.1e-07	F-box domain
FBA_3	PF08268	115 - 343	3.3e-22	F-box associated beta propeller domain
FBA_1	PF07734	133 - 385	1e-24	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54120
fragaria_vesca	FvH4_6g12180 FvH4_6g12180
malus_domestica	MD04G1146100.v1.1 MD12G1159300.v1.1
prunus_persica	Prupe.6G269700_v2.0.a1 Prupe.6G269700_v2.0.a1 Prupe.6G269700_v2.0.a1
pyrus_communis	pycom04g13170 pycom12g15110
rosa_chinensis	RchiOBHm_Chr3g0463981
rosa_laevigata	RLG00000024730
rosa_multiflora	Rmu_sc0006492.1_g000008
rosa_roxburghii	Rroxscaffold_6G00416090
rosa_rugosa	Rorug03G0069700 Rorug03G0069700 Rorug03G0069800
rosa_samantha	Rh3AG126700 Rh3BG130900 Rh3CG133200 Rh3DG132100
rosa_wichuraiana	Rw3G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	989
AatII	GACGTC	1 cut(s)	1105
Acc36I	ACCTGC	1 cut(s)	395
AccI	GTMKAC	2 cut(s)	348, 379
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	2 cut(s)	428, 1160
AcsI	RAATTY	3 cut(s)	7, 237, 279
AcyI	GRCGYC	1 cut(s)	1102
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	1037, 1154
AgsI	TTSAA	3 cut(s)	757, 1138, 1181
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	5 cut(s)	593, 835, 953, 1184, 1254
AluI	AGCT	5 cut(s)	593, 835, 953, 1184, 1254
Alw21I	GWGCWC	1 cut(s)	955
Alw26I	GTCTC	1 cut(s)	936
AlwI	GGATC	2 cut(s)	428, 1160
ApeKI	GCWGC	1 cut(s)	1088
ApoI	RAATTY	3 cut(s)	7, 237, 279
ArsI	GACNNNNNNTTYG	2 cut(s)	703, 735
AspS9I	GGNCC	2 cut(s)	1028, 1213
AsuHPI	GGTGA	2 cut(s)	332, 349
AsuII	TTCGAA	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	1028, 1213
AxyI	CCTNAGG	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	736, 955
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	955
BbvI	GCAGC	1 cut(s)	1075
BccI	CCATC	5 cut(s)	25, 311, 410, 1031, 1091
BceAI	ACGGC	1 cut(s)	720
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcoDI	GTCTC	1 cut(s)	936
BfaI	CTAG	4 cut(s)	395, 1034, 1251, 1255
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	1089
BlsI	GCNGC	1 cut(s)	1090
Bme18I	GGWCC	2 cut(s)	1028, 1213
BmgT120I	GGNCC	2 cut(s)	1028, 1213
BmiI	GGNNCC	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	2 cut(s)	74, 788
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	1121
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	3 cut(s)	191, 579, 1253
Bsa29I	ATCGAT	1 cut(s)	978
BsaHI	GRCGYC	1 cut(s)	1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	1037, 1154
Bse1I	ACTGG	1 cut(s)	637
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	918
BseCI	ATCGAT	1 cut(s)	978
BseGI	GGATG	3 cut(s)	173, 526, 807
BseLI	CCNNNNNNNGG	2 cut(s)	1037, 1154
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	2 cut(s)	510, 845
BseXI	GCAGC	1 cut(s)	1075
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	955
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	1037, 1154
BsmAI	GTCTC	1 cut(s)	936
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	2 cut(s)	736, 955
Bsp143I	GATC	3 cut(s)	420, 699, 1165
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	264
BspDI	ATCGAT	1 cut(s)	978
BspHI	TCATGA	2 cut(s)	841, 871
BspLI	GGNNCC	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	428, 1160
BspT104I	TTCGAA	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	918
BsrI	ACTGG	1 cut(s)	637
BssMI	GATC	3 cut(s)	420, 699, 1165
BssNI	GRCGYC	1 cut(s)	1102
Bst4CI	ACNGT	4 cut(s)	202, 361, 938, 947
Bst6I	CTCTTC	2 cut(s)	21, 1061
BstACI	GRCGYC	1 cut(s)	1102
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	1222
BstDEI	CTNAG	2 cut(s)	251, 1121
BstENI	CCTNNNNNAGG	1 cut(s)	1035
BstF5I	GGATG	3 cut(s)	173, 526, 807
BstKTI	GATC	3 cut(s)	423, 702, 1168
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	3 cut(s)	420, 699, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	929
BstV1I	GCAGC	1 cut(s)	1075
BstV2I	GAAGAC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1165
Bsu15I	ATCGAT	1 cut(s)	978
Bsu36I	CCTNAGG	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	978
BtsCI	GGATG	3 cut(s)	173, 526, 807
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	4 cut(s)	198, 909, 952, 1092
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	1222
CciI	TCATGA	2 cut(s)	841, 871
Cfr13I	GGNCC	2 cut(s)	1028, 1213
ClaI	ATCGAT	1 cut(s)	978
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	5 cut(s)	722, 842, 872, 1154, 1217
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	251, 1121
DpnI	GATC	3 cut(s)	422, 701, 1167
DpnII	GATC	3 cut(s)	420, 699, 1165
DrdI	GACNNNNNNGTC	1 cut(s)	989
DseDI	GACNNNNNNGTC	1 cut(s)	989
Eam1104I	CTCTTC	2 cut(s)	21, 1061
EarI	CTCTTC	2 cut(s)	21, 1061
Ecl136II	GAGCTC	1 cut(s)	953
Eco24I	GRGCYC	2 cut(s)	736, 955
Eco47I	GGWCC	2 cut(s)	1028, 1213
Eco53kI	GAGCTC	1 cut(s)	953
Eco81I	CCTNAGG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	953
EcoNI	CCTNNNNNAGG	1 cut(s)	1035
EcoT38I	GRGCYC	2 cut(s)	736, 955
FaeI	CATG	5 cut(s)	725, 845, 875, 1157, 1220
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	5 cut(s)	721, 841, 871, 1153, 1216
FauNDI	CATATG	1 cut(s)	968
FblI	GTMKAC	2 cut(s)	348, 379
Fnu4HI	GCNGC	1 cut(s)	1089
FokI	GGATG	3 cut(s)	160, 513, 794
FriOI	GRGCYC	2 cut(s)	736, 955
Fsp4HI	GCNGC	1 cut(s)	1089
FspBI	CTAG	4 cut(s)	395, 1034, 1251, 1255
GluI	GCNGC	1 cut(s)	1089
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	1102
Hin1II	CATG	5 cut(s)	725, 845, 875, 1157, 1220
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	9 cut(s)	42, 73, 78, 482, 551, 573, 584, 914, 1048
HphI	GGTGA	2 cut(s)	332, 349
Hpy166II	GTNNAC	2 cut(s)	349, 380
Hpy188I	TCNGA	6 cut(s)	25, 72, 83, 498, 556, 1028
Hpy188III	TCNNGA	9 cut(s)	51, 395, 446, 596, 754, 842, 857, 872, 1034
Hpy8I	GTNNAC	2 cut(s)	349, 380
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	663, 747, 751, 1031
HpyCH4III	ACNGT	4 cut(s)	202, 361, 938, 947
HpyCH4IV	ACGT	2 cut(s)	108, 1102
HpyCH4V	TGCA	6 cut(s)	183, 306, 404, 465, 902, 1220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	929
HpyF3I	CTNAG	2 cut(s)	251, 1121
HpySE526I	ACGT	2 cut(s)	108, 1102
Hsp92I	GRCGYC	1 cut(s)	1102
Hsp92II	CATG	5 cut(s)	725, 845, 875, 1157, 1220
Kzo9I	GATC	3 cut(s)	420, 699, 1165
LmnI	GCTCC	3 cut(s)	739, 832, 950
Lsp1109I	GCAGC	1 cut(s)	1075
LweI	GCATC	2 cut(s)	74, 788
MaeI	CTAG	4 cut(s)	395, 1034, 1251, 1255
MaeII	ACGT	2 cut(s)	108, 1102
MaeIII	GTNAC	2 cut(s)	296, 1070
MalI	GATC	3 cut(s)	422, 701, 1167
MboI	GATC	3 cut(s)	420, 699, 1165
MboII	GAAGA	7 cut(s)	38, 485, 500, 503, 1078, 1136, 1175
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	2 cut(s)	736, 955
MluCI	AATT	8 cut(s)	7, 17, 237, 279, 337, 436, 615, 685
MlyI	GAGTC	2 cut(s)	560, 923
MmeI	TCCRAC	1 cut(s)	550
MseI	TTAA	5 cut(s)	222, 336, 744, 996, 1019
MslI	CAYNNNNRTG	3 cut(s)	414, 531, 1130
Mva1269I	GAATGC	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	929
NdeI	CATATG	1 cut(s)	968
NdeII	GATC	3 cut(s)	420, 699, 1165
NlaIII	CATG	5 cut(s)	725, 845, 875, 1157, 1220
NlaIV	GGNNCC	1 cut(s)	735
NspV	TTCGAA	1 cut(s)	656
PagI	TCATGA	2 cut(s)	841, 871
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	183
PfeI	GAWTC	7 cut(s)	42, 73, 78, 482, 573, 584, 1048
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	1090
PleI	GAGTC	2 cut(s)	559, 922
PpsI	GAGTC	2 cut(s)	559, 922
Psp124BI	GAGCTC	1 cut(s)	955
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	2 cut(s)	1028, 1213
PsuI	RGATCY	1 cut(s)	1165
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	3 cut(s)	414, 531, 1130
SacI	GAGCTC	1 cut(s)	955
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	5 cut(s)	222, 336, 744, 996, 1019
SatI	GCNGC	1 cut(s)	1089
Sau3AI	GATC	3 cut(s)	420, 699, 1165
Sau96I	GGNCC	2 cut(s)	1028, 1213
SchI	GAGTC	2 cut(s)	560, 923
SduI	GDGCHC	2 cut(s)	736, 955
SfaNI	GCATC	2 cut(s)	74, 788
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	2 cut(s)	1028, 1213
SmiMI	CAYNNNNRTG	3 cut(s)	414, 531, 1130
SmlI	CTYRAG	3 cut(s)	206, 594, 1232
SmoI	CTYRAG	3 cut(s)	206, 594, 1232
Sse9I	AATT	8 cut(s)	7, 17, 237, 279, 337, 436, 615, 685
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	4 cut(s)	395, 1034, 1251, 1255
SstI	GAGCTC	1 cut(s)	955
TaaI	ACNGT	4 cut(s)	202, 361, 938, 947
TaiI	ACGT	2 cut(s)	111, 1105
TaqI	TCGA	7 cut(s)	76, 348, 523, 656, 883, 978, 1046
TaqII	GACCGA	1 cut(s)	1201
TasI	AATT	8 cut(s)	7, 17, 237, 279, 337, 436, 615, 685
TfiI	GAWTC	7 cut(s)	42, 73, 78, 482, 573, 584, 1048
Tru1I	TTAA	5 cut(s)	222, 336, 744, 996, 1019
Tru9I	TTAA	5 cut(s)	222, 336, 744, 996, 1019
TscAI	CASTG	4 cut(s)	205, 909, 952, 1099
TseI	GCWGC	1 cut(s)	1088
TspDTI	ATGAA	8 cut(s)	162, 249, 429, 558, 629, 830, 839, 1142
TspGWI	ACGGA	2 cut(s)	80, 857
TspRI	CASTG	4 cut(s)	205, 909, 952, 1099
Tth111I	GACNNNGTC	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	1028, 1213
XagI	CCTNNNNNAGG	1 cut(s)	1035
XapI	RAATTY	3 cut(s)	7, 237, 279
XbaI	TCTAGA	2 cut(s)	394, 1033
XcmI	CCANNNNNNNNNTGG	2 cut(s)	925, 1059
XmiI	GTMKAC	2 cut(s)	348, 379
XspI	CTAG	4 cut(s)	395, 1034, 1251, 1255
ZraI	GACGTC	1 cut(s)	1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.