Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Reverse (-)

20084971 .. 20086967

Gene Structure 1997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTACCTCAGAGACTCGAGTCTTGTTCTTATCTTTGTGTCTCATCCTTGGCAAAGTAGTTTTGTCTCAGTTTGATGAGTTATGGCTAGTAGGGGACGATGATCCACTCAACGCCTTGCAGACGAGGCGTGAAAGAAGAGAGGAGAGGTGTGATTACTCGGTGGGGAAATGGACGTTCGATGAAACGTATCCGCTCTATGATTCAAGCTGTCCATATCTGAGTTCTGCACTAAGTTGCCAAAGAAATGGAAGACCCGACTCTTATTACCAGAAATGGAGATGGATCCCTAAGGCTTGTTCACTACCAAGGTTTGACGCATTGAAATTTCTTGGGAAAATGAGAGGAAAAAGAATAATGCTGGTTGGAGATTCAATGATGAGAAACCAGTGGGAATCTCTTGTCTGCTTAGTACAGTCTGTTCTTCCCACTCATCGTAAGAAGCTCACTTACAATGGTCCTACGATGTCTTTCCATTCTCTGGATTTTGAGACATCAATTGAGTTTTGTTGGGCTCCTCTGCTTGTGGAACTCAAGAGAGGAGTTGACCGTAAAAGGGTGTTACATTTGGACTCAATCGAAGACAATGCTAGATATTGGCGTGGTGTAGATGTTCTTGTATTCGATTCCGCTCACTGGTGGACTCACTCTCAGAGATGGAGTTCGTGGGATTATTACATGGATGGGAATAAGATCTTCAAAGCTATGGACCCAATGGTTGCTTATGAGAGAGGACTAACCACATGGGCTAAATGGGTTGAGATAAATCTTGATCCATCCAAAACAAAAGTCATTTTCCGCACTGTCTCACCGAGAGAGAGTGGTCAGATGTGCTACAACCAGAAACATCCCTTGCCTTCTTTATCTTCTTCCACCAAACCCCACGTGCCTCAACAGTCAAGAGTGTTGAACAAAGTGCTAAGGACAATGAAATACCGAGTGTATTTATACGATATCACAACAATGTCTGCGTATAGAAGAGACGGTCATCCTTCGGTGTTCAAGAGAGCAATGCACGAGGAAGAGAAGCACCATCGTATCGCTGGACCTTCATCAGATTGCAGTCATTGGTGCTTGCCCGGTGTCCCGGATATTTGGAATGAGATGCTTTCTTCAATTATCTTAACCAATGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

379

Amino Acids

44.37

Weight (kDa)

9.04

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	49 - 101	3.7e-19	PMR5 N terminal Domain
PC-Esterase	PF13839	102 - 371	8.4e-85	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccBSI	CCGCTC	2 cut(s)	196, 632
AciI	CCGC	3 cut(s)	194, 630, 799
AclWI	GGATC	4 cut(s)	98, 280, 293, 767
AcsI	RAATTY	1 cut(s)	326
AcvI	CACGTG	1 cut(s)	886
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	481, 556, 636
AgsI	TTSAA	7 cut(s)	207, 325, 375, 700, 910, 1003, 1116
AluBI	AGCT	3 cut(s)	210, 445, 704
AluI	AGCT	3 cut(s)	210, 445, 704
Alw26I	GTCTC	6 cut(s)	8, 47, 72, 485, 811, 975
AlwI	GGATC	4 cut(s)	98, 280, 293, 767
Ama87I	CYCGRG	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	774, 806
AspS9I	GGNCC	3 cut(s)	458, 709, 1046
AsuC2I	CCSGG	2 cut(s)	1080, 1088
AsuHPI	GGTGA	1 cut(s)	801
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	3 cut(s)	458, 709, 1046
AxyI	CCTNAGG	1 cut(s)	291
BaeI	ACNNNNGTAYC	2 cut(s)	1021, 1054
BamHI	GGATCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BauI	CACGAG	1 cut(s)	1016
BbrPI	CACGTG	1 cut(s)	886
BbsI	GAAGAC	2 cut(s)	259, 588
BccI	CCATC	5 cut(s)	276, 651, 677, 784, 1041
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciVI	GTATCC	1 cut(s)	201
BcnI	CCSGG	2 cut(s)	1080, 1088
BcoDI	GTCTC	6 cut(s)	8, 47, 72, 485, 811, 975
BfaI	CTAG	2 cut(s)	89, 591
BfuI	GTATCC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	693
Bme1390I	CCNGG	2 cut(s)	1080, 1088
Bme18I	GGWCC	3 cut(s)	458, 709, 1046
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	3 cut(s)	458, 709, 1046
BmiI	GGNNCC	3 cut(s)	287, 516, 711
BmrFI	CCNGG	2 cut(s)	1080, 1088
BmsI	GCATC	1 cut(s)	1095
BoxI	GACNNNNGTC	1 cut(s)	20
BpiI	GAAGAC	2 cut(s)	259, 588
Bpu10I	CCTNAGC	1 cut(s)	920
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	2 cut(s)	1080, 1088
BsaAI	YACGTR	1 cut(s)	886
BsaJI	CCNNGG	2 cut(s)	49, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 556, 636
Bse1I	ACTGG	2 cut(s)	388, 641
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	1017
BseDI	CCNNGG	2 cut(s)	49, 308
BseGI	GGATG	5 cut(s)	45, 688, 776, 847, 988
BseLI	CCNNNNNNNGG	3 cut(s)	481, 556, 636
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	4 cut(s)	24, 83, 212, 665
BseNI	ACTGG	2 cut(s)	388, 641
BseRI	GAGGAG	3 cut(s)	158, 507, 555
BsgI	GTGCAG	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	1080, 1088
BslFI	GGGAC	2 cut(s)	110, 1070
BslI	CCNNNNNNNGG	3 cut(s)	481, 556, 636
BsmAI	GTCTC	6 cut(s)	8, 47, 72, 485, 811, 975
BsmBI	CGTCTC	1 cut(s)	975
BsmFI	GGGAC	2 cut(s)	110, 1070
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	4 cut(s)	103, 285, 693, 772
BspACI	CCGC	3 cut(s)	194, 630, 799
BspCNI	CTCAG	4 cut(s)	23, 82, 213, 664
BspLI	GGNNCC	3 cut(s)	287, 516, 711
BspPI	GGATC	4 cut(s)	98, 280, 293, 767
BsrBI	CCGCTC	2 cut(s)	196, 632
BsrDI	GCAATG	1 cut(s)	1017
BsrI	ACTGG	2 cut(s)	388, 641
BssECI	CCNNGG	2 cut(s)	49, 308
BssMI	GATC	4 cut(s)	103, 285, 693, 772
BssSI	CACGAG	1 cut(s)	1016
BssT1I	CCWWGG	2 cut(s)	49, 308
Bst2BI	CACGAG	1 cut(s)	1016
Bst4CI	ACNGT	5 cut(s)	417, 551, 805, 897, 986
Bst6I	CTCTTC	3 cut(s)	133, 973, 1017
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	1 cut(s)	1076
BstDEI	CTNAG	8 cut(s)	10, 69, 221, 233, 291, 409, 651, 920
BstF5I	GGATG	5 cut(s)	45, 688, 776, 847, 988
BstKTI	GATC	4 cut(s)	106, 288, 696, 775
BstMAI	GTCTC	6 cut(s)	8, 47, 72, 485, 811, 975
BstMBI	GATC	4 cut(s)	103, 285, 693, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstPAI	GACNNNNGTC	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	1078, 1086
BstV2I	GAAGAC	2 cut(s)	259, 588
BstX2I	RGATCY	2 cut(s)	285, 693
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	285, 693
Bsu36I	CCTNAGG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	201
BtsCI	GGATG	5 cut(s)	45, 688, 776, 847, 988
BtsIMutI	CAGTG	3 cut(s)	395, 634, 801
Cac8I	GCNNGC	1 cut(s)	1076
Cfr13I	GGNCC	3 cut(s)	458, 709, 1046
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	2 cut(s)	679, 744
CviJI	RGCY	8 cut(s)	5, 88, 210, 296, 445, 515, 704, 749
CviKI_1	RGCY	8 cut(s)	5, 88, 210, 296, 445, 515, 704, 749
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	8 cut(s)	10, 69, 221, 233, 291, 409, 651, 920
DpnI	GATC	4 cut(s)	105, 287, 695, 774
DpnII	GATC	4 cut(s)	103, 285, 693, 772
Eam1104I	CTCTTC	3 cut(s)	133, 973, 1017
EarI	CTCTTC	3 cut(s)	133, 973, 1017
Eco130I	CCWWGG	2 cut(s)	49, 308
Eco24I	GRGCYC	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	3 cut(s)	458, 709, 1046
Eco72I	CACGTG	1 cut(s)	886
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	2 cut(s)	49, 308
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	2 cut(s)	49, 308
Esp3I	CGTCTC	1 cut(s)	975
FaeI	CATG	2 cut(s)	682, 747
FaqI	GGGAC	2 cut(s)	110, 1070
FatI	CATG	2 cut(s)	678, 743
FokI	GGATG	5 cut(s)	32, 695, 763, 834, 975
FriOI	GRGCYC	1 cut(s)	517
FspBI	CTAG	2 cut(s)	89, 591
HapII	CCGG	2 cut(s)	1080, 1088
HgaI	GACGC	1 cut(s)	326
Hin1II	CATG	2 cut(s)	682, 747
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	9 cut(s)	16, 21, 203, 260, 371, 395, 572, 626, 643
HpaII	CCGG	2 cut(s)	1080, 1088
HphI	GGTGA	1 cut(s)	801
Hpy166II	GTNNAC	3 cut(s)	302, 547, 642
Hpy188I	TCNGA	5 cut(s)	13, 222, 654, 828, 1057
Hpy188III	TCNNGA	5 cut(s)	482, 535, 770, 900, 1003
Hpy8I	GTNNAC	3 cut(s)	302, 547, 642
HpyAV	CCTTC	3 cut(s)	867, 1002, 1059
HpyCH4III	ACNGT	5 cut(s)	417, 551, 805, 897, 986
HpyCH4IV	ACGT	3 cut(s)	176, 188, 885
HpyCH4V	TGCA	4 cut(s)	121, 230, 1015, 1062
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	8 cut(s)	10, 69, 221, 233, 291, 409, 651, 920
HpySE526I	ACGT	3 cut(s)	176, 188, 885
Hsp92II	CATG	2 cut(s)	682, 747
Kzo9I	GATC	4 cut(s)	103, 285, 693, 772
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	9 cut(s)	284, 347, 401, 467, 622, 854, 1029, 1093, 1101
LweI	GCATC	1 cut(s)	1095
MaeI	CTAG	2 cut(s)	89, 591
MaeII	ACGT	3 cut(s)	176, 188, 885
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	4 cut(s)	105, 287, 695, 774
MbiI	CCGCTC	2 cut(s)	196, 632
MboI	GATC	4 cut(s)	103, 285, 693, 772
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	285, 693
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	3 cut(s)	326, 498, 1116
MlyI	GAGTC	5 cut(s)	10, 30, 254, 566, 637
MmeI	TCCRAC	1 cut(s)	346
MseI	TTAA	1 cut(s)	1124
MslI	CAYNNNNRTG	1 cut(s)	962
MspI	CCGG	2 cut(s)	1080, 1088
MspR9I	CCNGG	2 cut(s)	1080, 1088
MunI	CAATTG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	127
NciI	CCSGG	2 cut(s)	1080, 1088
NdeII	GATC	4 cut(s)	103, 285, 693, 772
NlaIII	CATG	2 cut(s)	682, 747
NlaIV	GGNNCC	3 cut(s)	287, 516, 711
PaeR7I	CTCGAG	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	203, 371, 395, 626
PflMI	CCANNNNNTGG	1 cut(s)	481
PfoI	TCCNGGA	1 cut(s)	1086
PleI	GAGTC	5 cut(s)	10, 29, 254, 566, 637
PmaCI	CACGTG	1 cut(s)	886
PmlI	CACGTG	1 cut(s)	886
PpsI	GAGTC	5 cut(s)	10, 29, 254, 566, 637
Ppu21I	YACGTR	1 cut(s)	886
PshAI	GACNNNNGTC	1 cut(s)	20
PspCI	CACGTG	1 cut(s)	886
PspN4I	GGNNCC	3 cut(s)	287, 516, 711
PspPI	GGNCC	3 cut(s)	458, 709, 1046
PspXI	VCTCGAGB	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	405, 437
PsuI	RGATCY	2 cut(s)	285, 693
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	962
SaqAI	TTAA	1 cut(s)	1124
Sau3AI	GATC	4 cut(s)	103, 285, 693, 772
Sau96I	GGNCC	3 cut(s)	458, 709, 1046
SchI	GAGTC	5 cut(s)	10, 30, 254, 566, 637
ScrFI	CCNGG	2 cut(s)	1080, 1088
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	1095
Sfr274I	CTCGAG	1 cut(s)	18
SinI	GGWCC	3 cut(s)	458, 709, 1046
SlaI	CTCGAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	962
SmlI	CTYRAG	2 cut(s)	18, 533
SmoI	CTYRAG	2 cut(s)	18, 533
Sse9I	AATT	3 cut(s)	326, 498, 1116
SsiI	CCGC	3 cut(s)	194, 630, 799
SspMI	CTAG	2 cut(s)	89, 591
StyD4I	CCNGG	2 cut(s)	1078, 1086
StyI	CCWWGG	2 cut(s)	49, 308
TaaI	ACNGT	5 cut(s)	417, 551, 805, 897, 986
TaiI	ACGT	3 cut(s)	179, 191, 888
TaqI	TCGA	4 cut(s)	19, 180, 579, 624
TasI	AATT	3 cut(s)	326, 498, 1116
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	4 cut(s)	203, 371, 395, 626
Tru1I	TTAA	1 cut(s)	1124
Tru9I	TTAA	1 cut(s)	1124
TscAI	CASTG	3 cut(s)	395, 641, 808
TspDTI	ATGAA	3 cut(s)	198, 944, 1041
TspRI	CASTG	3 cut(s)	395, 641, 808
Van91I	CCANNNNNTGG	1 cut(s)	481
VpaK11BI	GGWCC	3 cut(s)	458, 709, 1046
XapI	RAATTY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1040
XhoI	CTCGAG	1 cut(s)	18
XspI	CTAG	2 cut(s)	89, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.