Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Reverse (-)

5993184 .. 5995141

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1063900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGCAAACCAAAGCTTCAACTCCTCTTCTTCTCCAACATCTTCATTGTCTTTCTATGCTTCTTTCATGGGAAGTCATCACATCTTGAGCTAGAAGATGACTTTTGGCTTGACGATGAAGATGATGCAGTGAACATGGTTCAGAGCCACCAAAATTCAAGGAGGAGATGTGAGCTCTCTGACGGAAAATGGGTTTACGATCAATCGTACCCTCTTTATGACTCGACTTGTCCATATCTTAGCACTGCGGTGACTTGTCAAAAGAATGGAAGGCCGGATTCCGACTACGAAAAGTGGAGGTGGAAGCCAAACAGCTGCTCCATTCCAAGGTTTGATGCACTGAAATTTCTTGGGAAGATGAGAAGGAAAAGAATAATGCTGGTGGGTGATTCTATAATGCGGAATCAGTGGGAATCTCTAGTGTGCTTGGTACAAGGAGTTGTTCCAACTGGCAGAAAGAGAGTGACCTACAATGGTCCTTCAATGGCATTCCATGCAATGGATTTTGAGACATCGATTGAGTTTTCGTGGGCACCACTCCTAGTGGAGTTGAACAGAGGAGCTGACAAAAAGAGAATTTTACATTTGGACTTGATAGAAGAGAATGCAAAGTACTGGAGAGGAGCTGATGTTCTTGTGTTTGATTCTGCTCACTGGTGGACTCACTCTGACAAATCGAGTTCGTGGGATTATTACATGGAAGGGCACTCTCTGTATACAAACATTAATCCAATGGTTGCATACCAAAAAGGACTCACTACATGGGCTAAATGGATCGATTTAAACCTAGATCCTCGAAAAACCCGAGTGATTTTTCGAAGCATGTCTCCTAGGCACAACAGAGAAAATGGTTGGAGATGCTATAATCAGAAGCAGCCTCTGGCTTATTTCAGTCACCAACATGTTCCAGAGCCATTGATAGTGCTACAAACTGTATTGAGAAATATGAGATTTCCGGTATATCTTCAGGACATAACTACCATGTCGGCTTTTCGAAGAGACGGGCACCCTTCTGTGTACAGAAGGGCCATGGGGCAAGAAGAGAAGCAGCACCCAGGAGGCTTATCCTCTGACTGCAGCCATTGGTGCCTTCCTGGGGTGCCTGATAGTTGGAATGAGATGTTGAATGCCTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

380

Amino Acids

44.51

Weight (kDa)

8.47

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	56 - 107	1.6e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	108 - 377	9.5e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	532, 1005, 1086, 1099
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	716
AciI	CCGC	2 cut(s)	248, 400
AclWI	GGATC	2 cut(s)	782, 785
AcsI	RAATTY	3 cut(s)	154, 344, 576
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	4 cut(s)	209, 432, 614, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
AflIII	ACRYGT	1 cut(s)	901
AgsI	TTSAA	5 cut(s)	20, 159, 483, 553, 1126
AjnI	CCWGG	2 cut(s)	1054, 1093
AleI	CACNNNNGTG	1 cut(s)	248
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	6 cut(s)	16, 91, 175, 315, 563, 626
AluI	AGCT	6 cut(s)	16, 91, 175, 315, 563, 626
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	3 cut(s)	503, 831, 993
AlwI	GGATC	2 cut(s)	782, 785
AlwNI	CAGNNNCTG	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	2 cut(s)	272, 1026
ApeKI	GCWGC	4 cut(s)	315, 874, 1048, 1077
ApoI	RAATTY	3 cut(s)	154, 344, 576
AseI	ATTAAT	1 cut(s)	726
AspA2I	CCTAGG	1 cut(s)	830
AspS9I	GGNCC	2 cut(s)	476, 1026
AsuHPI	GGTGA	3 cut(s)	262, 398, 887
AsuII	TTCGAA	2 cut(s)	817, 994
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	476
AvrII	CCTAGG	1 cut(s)	830
BaeGI	GKGCMC	3 cut(s)	535, 708, 1008
BanI	GGYRCC	4 cut(s)	532, 1005, 1086, 1099
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	302, 886, 1060, 1089
BciT130I	CCWGG	2 cut(s)	1056, 1095
BcoDI	GTCTC	3 cut(s)	503, 831, 993
BfaI	CTAG	5 cut(s)	92, 419, 542, 788, 831
BfmI	CTRYAG	1 cut(s)	1075
BisI	GCNGC	4 cut(s)	316, 875, 1049, 1078
BlnI	CCTAGG	1 cut(s)	830
BlsI	GCNGC	4 cut(s)	317, 876, 1050, 1079
BmcAI	AGTACT	1 cut(s)	614
Bme1390I	CCNGG	2 cut(s)	1056, 1095
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	2 cut(s)	476, 1026
BmiI	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
BmrFI	CCNGG	2 cut(s)	1056, 1095
BmsI	GCATC	3 cut(s)	115, 325, 848
BpmI	CTGGAG	1 cut(s)	637
Bpu14I	TTCGAA	2 cut(s)	817, 994
BpuEI	CTTGAG	1 cut(s)	107
Bsa29I	ATCGAT	2 cut(s)	515, 777
BsaJI	CCNNGG	5 cut(s)	326, 830, 1029, 1054, 1094
BsaWI	WCCGGW	1 cut(s)	955
BsaXI	ACNNNNNCTCC	6 cut(s)	154, 184, 302, 332, 615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
Bse1I	ACTGG	3 cut(s)	454, 620, 659
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	1056, 1095
BseCI	ATCGAT	2 cut(s)	515, 777
BseDI	CCNNGG	5 cut(s)	326, 830, 1029, 1054, 1094
BseLI	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
BseMI	GCAATG	1 cut(s)	504
BseNI	ACTGG	3 cut(s)	454, 620, 659
BseRI	GAGGAG	4 cut(s)	14, 178, 573, 636
BseSI	GKGCMC	3 cut(s)	535, 708, 1008
BseXI	GCAGC	4 cut(s)	302, 886, 1060, 1089
BshFI	GGCC	2 cut(s)	274, 1028
BshNI	GGYRCC	4 cut(s)	532, 1005, 1086, 1099
BshVI	ATCGAT	2 cut(s)	515, 777
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	2 cut(s)	275, 956
BslI	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
BsmAI	GTCTC	3 cut(s)	503, 831, 993
BsmBI	CGTCTC	1 cut(s)	993
BsmI	GAATGC	3 cut(s)	488, 610, 1132
BsnI	GGCC	2 cut(s)	274, 1028
BsoBI	CYCGRG	1 cut(s)	804
Bsp119I	TTCGAA	2 cut(s)	817, 994
Bsp1286I	GDGCHC	4 cut(s)	177, 535, 708, 1008
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	3 cut(s)	199, 774, 790
Bsp19I	CCATGG	1 cut(s)	1029
BspACI	CCGC	2 cut(s)	248, 400
BspANI	GGCC	2 cut(s)	274, 1028
BspDI	ATCGAT	2 cut(s)	515, 777
BspLI	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
BspMAI	CTGCAG	1 cut(s)	1079
BspPI	GGATC	2 cut(s)	782, 785
BspT104I	TTCGAA	2 cut(s)	817, 994
BspT107I	GGYRCC	4 cut(s)	532, 1005, 1086, 1099
BsrDI	GCAATG	1 cut(s)	504
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	454, 620, 659
BssECI	CCNNGG	5 cut(s)	326, 830, 1029, 1054, 1094
BssMI	GATC	3 cut(s)	199, 774, 790
BssNAI	GTATAC	1 cut(s)	717
BssT1I	CCWWGG	3 cut(s)	326, 830, 1029
Bst1107I	GTATAC	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	1056, 1095
Bst4CI	ACNGT	1 cut(s)	934
Bst6I	CTCTTC	4 cut(s)	32, 594, 991, 1035
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	1017
BstBI	TTCGAA	2 cut(s)	817, 994
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	1029
BstKTI	GATC	3 cut(s)	202, 777, 793
BstMAI	GTCTC	3 cut(s)	503, 831, 993
BstMBI	GATC	3 cut(s)	199, 774, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 1086
BstNI	CCWGG	2 cut(s)	1056, 1095
BstNSI	RCATGY	2 cut(s)	826, 905
BstSCI	CCNGG	2 cut(s)	1054, 1093
BstSFI	CTRYAG	1 cut(s)	1075
BstSLI	GKGCMC	3 cut(s)	535, 708, 1008
BstV1I	GCAGC	4 cut(s)	302, 886, 1060, 1089
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BstZ17I	GTATAC	1 cut(s)	717
Bsu15I	ATCGAT	2 cut(s)	515, 777
BsuRI	GGCC	2 cut(s)	274, 1028
BsuTUI	ATCGAT	2 cut(s)	515, 777
BtgI	CCRYGG	1 cut(s)	1029
BtsI	GCAGTG	2 cut(s)	135, 243
BtsIMutI	CAGTG	5 cut(s)	135, 243, 338, 413, 652
CaiI	CAGNNNCTG	1 cut(s)	880
Cfr13I	GGNCC	2 cut(s)	476, 1026
ClaI	ATCGAT	2 cut(s)	515, 777
Csp6I	GTAC	4 cut(s)	208, 431, 613, 1018
CviAII	CATG	9 cut(s)	68, 136, 494, 697, 762, 823, 902, 982, 1030
CviQI	GTAC	4 cut(s)	208, 431, 613, 1018
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	201, 776, 792
DpnII	GATC	3 cut(s)	199, 774, 790
DraI	TTTAAA	1 cut(s)	783
Eam1104I	CTCTTC	4 cut(s)	32, 594, 991, 1035
EarI	CTCTTC	4 cut(s)	32, 594, 991, 1035
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	3 cut(s)	326, 830, 1029
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	950
Eco88I	CYCGRG	1 cut(s)	804
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	1054, 1093
EcoT14I	CCWWGG	3 cut(s)	326, 830, 1029
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	3 cut(s)	326, 830, 1029
Esp3I	CGTCTC	1 cut(s)	993
FaeI	CATG	9 cut(s)	71, 139, 497, 700, 765, 826, 905, 985, 1033
FatI	CATG	9 cut(s)	67, 135, 493, 696, 761, 822, 901, 981, 1029
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	4 cut(s)	316, 875, 1049, 1078
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	4 cut(s)	316, 875, 1049, 1078
FspBI	CTAG	5 cut(s)	92, 419, 542, 788, 831
GluI	GCNGC	4 cut(s)	316, 875, 1049, 1078
GsuI	CTGGAG	1 cut(s)	637
HaeIII	GGCC	2 cut(s)	274, 1028
HapII	CCGG	2 cut(s)	275, 956
Hin1II	CATG	9 cut(s)	71, 139, 497, 700, 765, 826, 905, 985, 1033
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	8 cut(s)	221, 278, 389, 403, 413, 644, 661, 753
HpaII	CCGG	2 cut(s)	275, 956
HphI	GGTGA	3 cut(s)	262, 398, 887
Hpy166II	GTNNAC	5 cut(s)	133, 196, 660, 717, 1018
Hpy188I	TCNGA	6 cut(s)	144, 181, 283, 670, 870, 1072
Hpy188III	TCNNGA	3 cut(s)	86, 908, 968
Hpy8I	GTNNAC	5 cut(s)	133, 196, 660, 717, 1018
HpyAV	CCTTC	7 cut(s)	264, 357, 489, 695, 1017, 1020, 1100
HpyCH4III	ACNGT	1 cut(s)	934
HpyCH4V	TGCA	6 cut(s)	128, 338, 497, 608, 740, 1077
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 1086
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	9 cut(s)	71, 139, 497, 700, 765, 826, 905, 985, 1033
Kzo9I	GATC	3 cut(s)	199, 774, 790
LmnI	GCTCC	3 cut(s)	323, 560, 623
Lsp1109I	GCAGC	4 cut(s)	302, 886, 1060, 1089
LweI	GCATC	3 cut(s)	115, 325, 848
MaeI	CTAG	5 cut(s)	92, 419, 542, 788, 831
MaeIII	GTNAC	3 cut(s)	250, 463, 893
MalI	GATC	3 cut(s)	201, 776, 792
MboI	GATC	3 cut(s)	199, 774, 790
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	4 cut(s)	177, 535, 708, 1008
MluCI	AATT	3 cut(s)	154, 344, 576
MlyI	GAGTC	3 cut(s)	215, 655, 747
MmeI	TCCRAC	5 cut(s)	60, 306, 470, 833, 1091
MseI	TTAA	3 cut(s)	726, 782, 1138
MslI	CAYNNNNRTG	2 cut(s)	248, 900
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	275, 956
MspR9I	CCNGG	2 cut(s)	1056, 1095
Mva1269I	GAATGC	3 cut(s)	488, 610, 1132
MvaI	CCWGG	2 cut(s)	1056, 1095
MwoI	GCNNNNNNNGC	2 cut(s)	494, 1086
NcoI	CCATGG	1 cut(s)	1029
NdeII	GATC	3 cut(s)	199, 774, 790
NlaIII	CATG	9 cut(s)	71, 139, 497, 700, 765, 826, 905, 985, 1033
NlaIV	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
NmuCI	GTSAC	3 cut(s)	250, 463, 893
NspI	RCATGY	2 cut(s)	826, 905
NspV	TTCGAA	2 cut(s)	817, 994
OliI	CACNNNNGTG	1 cut(s)	248
PciI	ACATGT	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PctI	GAATGC	3 cut(s)	488, 610, 1132
PfeI	GAWTC	5 cut(s)	278, 389, 403, 413, 644
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	317, 876, 1050, 1079
PleI	GAGTC	3 cut(s)	215, 655, 747
PpsI	GAGTC	3 cut(s)	215, 655, 747
PscI	ACATGT	1 cut(s)	901
PshBI	ATTAAT	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	1054, 1093
PspGI	CCWGG	2 cut(s)	1054, 1093
PspN4I	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
PspPI	GGNCC	2 cut(s)	476, 1026
PstI	CTGCAG	1 cut(s)	1079
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	790
PvuII	CAGCTG	1 cut(s)	315
RsaI	GTAC	4 cut(s)	209, 432, 614, 1019
RsaNI	GTAC	4 cut(s)	208, 431, 613, 1018
RseI	CAYNNNNRTG	2 cut(s)	248, 900
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	726, 782, 1138
SatI	GCNGC	4 cut(s)	316, 875, 1049, 1078
Sau3AI	GATC	3 cut(s)	199, 774, 790
Sau96I	GGNCC	2 cut(s)	476, 1026
ScaI	AGTACT	1 cut(s)	614
SchI	GAGTC	3 cut(s)	215, 655, 747
ScrFI	CCNGG	2 cut(s)	1056, 1095
SduI	GDGCHC	4 cut(s)	177, 535, 708, 1008
SfaNI	GCATC	3 cut(s)	115, 325, 848
SfcI	CTRYAG	1 cut(s)	1075
SfuI	TTCGAA	2 cut(s)	817, 994
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	248, 900
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	154, 344, 576
SsiI	CCGC	2 cut(s)	248, 400
SspMI	CTAG	5 cut(s)	92, 419, 542, 788, 831
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	1054, 1093
StyI	CCWWGG	3 cut(s)	326, 830, 1029
TaaI	ACNGT	1 cut(s)	934
TaqI	TCGA	7 cut(s)	224, 515, 677, 777, 796, 817, 994
TasI	AATT	3 cut(s)	154, 344, 576
TatI	WGTACW	2 cut(s)	612, 1017
TfiI	GAWTC	5 cut(s)	278, 389, 403, 413, 644
Tru1I	TTAA	3 cut(s)	726, 782, 1138
Tru9I	TTAA	3 cut(s)	726, 782, 1138
TscAI	CASTG	5 cut(s)	135, 250, 345, 413, 659
TseFI	GTSAC	3 cut(s)	250, 463, 893
TseI	GCWGC	4 cut(s)	315, 874, 1048, 1077
Tsp45I	GTSAC	3 cut(s)	250, 463, 893
TspDTI	ATGAA	3 cut(s)	34, 56, 132
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	5 cut(s)	135, 250, 345, 413, 659
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	3 cut(s)	154, 344, 576
XceI	RCATGY	2 cut(s)	826, 905
XmaJI	CCTAGG	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	716
XspI	CTAG	5 cut(s)	92, 419, 542, 788, 831
ZrmI	AGTACT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.