Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Reverse (-)

11891943 .. 11894248

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G077200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATGAAAACAAAGCTTCAACTCATCTTCCTCTTTAGCATCTTCATTGTCTTTCTGTGCTTCTCTCTTGGGAAGTCATCAGATTTTGAGCTGGAGGATGACTCTTGGCTTAATGATGAAGATGATGAAGTTAACATGGTTCAGAGCCAACAAAATTCAAGGAGCAGATGTGATTTTTCGGTTGGCAAGTGGGTTTACGATCAATCGTATCCTCTCTATGACTCTGGTTGTCCATATCTGAGCACTGCAGTGACTTGTCAGAAAAATGGAAGGCCGGATTCTGACTACGAAAAGTGGAGGTGGAAGCCAAACAGCTGCTCCATTCCTAGGTTTGATGCATTGAAATTTCTTGGAAAAATGAGAAGGAAAAGGATAATGCTGGTGGGTGATTCTATAATGAGGAATCAGTGGGAGTCTCTAGTCTGCTTGGTACAAGGAGTTGTTCCAACTGGTCGAAAGAGAGTGACCTACAATGGTCCTTCCATGGCATTCCATGCAATGGACTTTGAGACATCAATTGAGTTTTCATGGGCTCCACTCCTAGTAGAATTGAACAAAGGAGCTGAAAAGAAGAGAATTTTGCATTTGGACTTGATAGAAGAGAATGCAAAGTATTGGAGAGGAGTTGATGTTCTTGTGTTTGATTCTGCTCACTGGTGGACTCATTCTGATCAATCGAGTTCGTGGGATTATTACATGGAGGGACACTCTCTCTATACAAATATGAACCCAATGGTCGCATACCAAAAAGGACTCACTACATGGGCTAAATGGGTTGATTTAAACCTAGACCCTCGTAAAACCCGAGTAATTTTTCGAAGCATGTCACCTAGGCATAACAGAGAGAATGGTTGGAGATGCTATAATCAGAAGCAGCCTCTAGCTTATTTCAGTCACCAACATGTTCCTGAACCATTGCTAGTATTGCAAGGTGTATTGAGAAAGATGAGATTTCCAGTATATCTTCAGGACATAACTACAATGTCAGCTTTTCGAAGAGACGGGCACCCTTCTGTGTACAGAAGGGCAATGGGCCAGGAAGAGAGGCAGCACCCGAGGGACTTTTCCTCTGACTGCAGCCACTGGTGCCTACCTGGGGTGCCTGATAGTTGGAATGAGATTCTGAGTGCCTTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

380

Amino Acids

44.53

Weight (kDa)

8.28

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	1005, 1086, 1099
AccB7I	CCANNNNNTGG	1 cut(s)	499
AcsI	RAATTY	3 cut(s)	154, 344, 576
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	2 cut(s)	432, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
AflIII	ACRYGT	1 cut(s)	901
AgsI	TTSAA	4 cut(s)	20, 159, 343, 553
AjnI	CCWGG	2 cut(s)	1035, 1093
AleI	CACNNNNGTG	1 cut(s)	248
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	6 cut(s)	16, 91, 315, 563, 884, 989
AluI	AGCT	6 cut(s)	16, 91, 315, 563, 884, 989
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	3 cut(s)	420, 503, 993
AlwNI	CAGNNNCTG	1 cut(s)	1083
Ama87I	CYCGRG	2 cut(s)	804, 1054
AoxI	GGCC	2 cut(s)	272, 1033
ApeKI	GCWGC	4 cut(s)	315, 874, 1048, 1077
ApoI	RAATTY	3 cut(s)	154, 344, 576
AspA2I	CCTAGG	2 cut(s)	326, 830
AspS9I	GGNCC	2 cut(s)	476, 1033
AsuHPI	GGTGA	3 cut(s)	398, 819, 887
AsuII	TTCGAA	2 cut(s)	817, 994
AvaI	CYCGRG	2 cut(s)	804, 1054
AvaII	GGWCC	1 cut(s)	476
AvrII	CCTAGG	2 cut(s)	326, 830
BaeGI	GKGCMC	1 cut(s)	1008
BanI	GGYRCC	3 cut(s)	1005, 1086, 1099
BanII	GRGCYC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	302, 886, 1060, 1089
BciT130I	CCWGG	2 cut(s)	1037, 1095
BciVI	GTATCC	1 cut(s)	219
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	3 cut(s)	420, 503, 993
BfaI	CTAG	7 cut(s)	327, 419, 542, 788, 831, 881, 920
BfmI	CTRYAG	2 cut(s)	246, 1075
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	4 cut(s)	316, 875, 1049, 1078
BlnI	CCTAGG	2 cut(s)	326, 830
BlsI	GCNGC	4 cut(s)	317, 876, 1050, 1079
Bme1390I	CCNGG	2 cut(s)	1037, 1095
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	2 cut(s)	804, 1054
BmgT120I	GGNCC	2 cut(s)	476, 1033
BmiI	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
BmrFI	CCNGG	2 cut(s)	1037, 1095
BmsI	GCATC	3 cut(s)	48, 325, 848
BplI	GAGNNNNNCTC	4 cut(s)	86, 118, 692, 724
BpmI	CTGGAG	1 cut(s)	113
Bpu14I	TTCGAA	2 cut(s)	817, 994
BsaJI	CCNNGG	5 cut(s)	326, 483, 830, 1055, 1094
BsaXI	ACNNNNNCTCC	6 cut(s)	154, 184, 302, 332, 615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
Bse1I	ACTGG	4 cut(s)	454, 659, 956, 1088
Bse3DI	GCAATG	3 cut(s)	504, 914, 1035
BseBI	CCWGG	2 cut(s)	1037, 1095
BseDI	CCNNGG	5 cut(s)	326, 483, 830, 1055, 1094
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
BseMI	GCAATG	3 cut(s)	504, 914, 1035
BseMII	CTCAG	2 cut(s)	230, 1115
BseNI	ACTGG	4 cut(s)	454, 659, 956, 1088
BseRI	GAGGAG	1 cut(s)	636
BseSI	GKGCMC	1 cut(s)	1008
BseXI	GCAGC	4 cut(s)	302, 886, 1060, 1089
BshFI	GGCC	2 cut(s)	274, 1035
BshNI	GGYRCC	3 cut(s)	1005, 1086, 1099
BsiHKAI	GWGCWC	1 cut(s)	245
BsiHKCI	CYCGRG	2 cut(s)	804, 1054
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	717, 1073
BslI	CCNNNNNNNGG	3 cut(s)	327, 499, 1096
BsmAI	GTCTC	3 cut(s)	420, 503, 993
BsmBI	CGTCTC	1 cut(s)	993
BsmFI	GGGAC	2 cut(s)	717, 1073
BsmI	GAATGC	2 cut(s)	488, 610
BsnI	GGCC	2 cut(s)	274, 1035
BsoBI	CYCGRG	2 cut(s)	804, 1054
Bsp119I	TTCGAA	2 cut(s)	817, 994
Bsp1286I	GDGCHC	3 cut(s)	245, 535, 1008
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	2 cut(s)	199, 670
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	2 cut(s)	274, 1035
BspCNI	CTCAG	2 cut(s)	231, 1116
BspLI	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
BspMAI	CTGCAG	2 cut(s)	250, 1079
BspT104I	TTCGAA	2 cut(s)	817, 994
BspT107I	GGYRCC	3 cut(s)	1005, 1086, 1099
BsrDI	GCAATG	3 cut(s)	504, 914, 1035
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	4 cut(s)	454, 659, 956, 1088
BssECI	CCNNGG	5 cut(s)	326, 483, 830, 1055, 1094
BssMI	GATC	2 cut(s)	199, 670
BssT1I	CCWWGG	3 cut(s)	326, 483, 830
Bst2UI	CCWGG	2 cut(s)	1037, 1095
Bst6I	CTCTTC	4 cut(s)	566, 594, 991, 1035
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	1017
BstBI	TTCGAA	2 cut(s)	817, 994
BstDEI	CTNAG	2 cut(s)	239, 1124
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	202, 673
BstMAI	GTCTC	3 cut(s)	420, 503, 993
BstMBI	GATC	2 cut(s)	199, 670
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 925, 1086
BstNI	CCWGG	2 cut(s)	1037, 1095
BstNSI	RCATGY	2 cut(s)	826, 905
BstSCI	CCNGG	2 cut(s)	1035, 1093
BstSFI	CTRYAG	2 cut(s)	246, 1075
BstSLI	GKGCMC	1 cut(s)	1008
BstV1I	GCAGC	4 cut(s)	302, 886, 1060, 1089
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	274, 1035
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	2 cut(s)	243, 255
BtsIMutI	CAGTG	5 cut(s)	243, 255, 413, 652, 1081
CaiI	CAGNNNCTG	1 cut(s)	1083
Cfr13I	GGNCC	2 cut(s)	476, 1033
Csp6I	GTAC	2 cut(s)	431, 1018
CviAII	CATG	8 cut(s)	136, 484, 494, 528, 697, 762, 823, 902
CviQI	GTAC	2 cut(s)	431, 1018
DdeI	CTNAG	2 cut(s)	239, 1124
DpnI	GATC	2 cut(s)	201, 672
DpnII	GATC	2 cut(s)	199, 670
DraI	TTTAAA	1 cut(s)	783
Eam1104I	CTCTTC	4 cut(s)	566, 594, 991, 1035
EarI	CTCTTC	4 cut(s)	566, 594, 991, 1035
Eco130I	CCWWGG	3 cut(s)	326, 483, 830
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	950
Eco88I	CYCGRG	2 cut(s)	804, 1054
EcoRII	CCWGG	2 cut(s)	1035, 1093
EcoT14I	CCWWGG	3 cut(s)	326, 483, 830
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	3 cut(s)	326, 483, 830
Esp3I	CGTCTC	1 cut(s)	993
FaeI	CATG	8 cut(s)	139, 487, 497, 531, 700, 765, 826, 905
FaqI	GGGAC	2 cut(s)	717, 1073
FatI	CATG	8 cut(s)	135, 483, 493, 527, 696, 761, 822, 901
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	4 cut(s)	316, 875, 1049, 1078
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	4 cut(s)	316, 875, 1049, 1078
FspBI	CTAG	7 cut(s)	327, 419, 542, 788, 831, 881, 920
GluI	GCNGC	4 cut(s)	316, 875, 1049, 1078
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	274, 1035
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	8 cut(s)	139, 487, 497, 531, 700, 765, 826, 905
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	14
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	3 cut(s)	398, 819, 887
Hpy166II	GTNNAC	4 cut(s)	133, 196, 660, 1018
Hpy188III	TCNNGA	2 cut(s)	908, 968
Hpy8I	GTNNAC	4 cut(s)	133, 196, 660, 1018
HpyAV	CCTTC	5 cut(s)	264, 357, 489, 1017, 1020
HpyCH4V	TGCA	7 cut(s)	248, 338, 497, 583, 608, 928, 1077
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 925, 1086
HpyF3I	CTNAG	2 cut(s)	239, 1124
Hsp92II	CATG	8 cut(s)	139, 487, 497, 531, 700, 765, 826, 905
Ksp22I	TGATCA	1 cut(s)	670
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	199, 670
LmnI	GCTCC	4 cut(s)	162, 323, 538, 560
Lsp1109I	GCAGC	4 cut(s)	302, 886, 1060, 1089
LweI	GCATC	3 cut(s)	48, 325, 848
MaeI	CTAG	7 cut(s)	327, 419, 542, 788, 831, 881, 920
MaeIII	GTNAC	4 cut(s)	250, 463, 825, 893
MalI	GATC	2 cut(s)	201, 672
MboI	GATC	2 cut(s)	199, 670
MboII	GAAGA	8 cut(s)	19, 34, 131, 583, 611, 956, 1008, 1052
MfeI	CAATTG	1 cut(s)	516
MhlI	GDGCHC	3 cut(s)	245, 535, 1008
MluCI	AATT	6 cut(s)	154, 344, 516, 548, 576, 810
MlyI	GAGTC	5 cut(s)	95, 215, 422, 655, 747
MmeI	TCCRAC	3 cut(s)	470, 833, 1091
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	3 cut(s)	111, 132, 782
MslI	CAYNNNNRTG	2 cut(s)	248, 900
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	1037, 1095
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	2 cut(s)	488, 610
MvaI	CCWGG	2 cut(s)	1037, 1095
MwoI	GCNNNNNNNGC	3 cut(s)	494, 925, 1086
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	199, 670
NlaIII	CATG	8 cut(s)	139, 487, 497, 531, 700, 765, 826, 905
NlaIV	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
NmuCI	GTSAC	4 cut(s)	250, 463, 825, 893
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	2 cut(s)	826, 905
NspV	TTCGAA	2 cut(s)	817, 994
OliI	CACNNNNGTG	1 cut(s)	248
PciI	ACATGT	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PctI	GAATGC	2 cut(s)	488, 610
PfeI	GAWTC	5 cut(s)	278, 389, 403, 644, 1120
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	317, 876, 1050, 1079
PleI	GAGTC	5 cut(s)	95, 215, 421, 655, 747
PpsI	GAGTC	5 cut(s)	95, 215, 421, 655, 747
PscI	ACATGT	1 cut(s)	901
Psp6I	CCWGG	2 cut(s)	1035, 1093
PspGI	CCWGG	2 cut(s)	1035, 1093
PspN4I	GGNNCC	4 cut(s)	534, 1007, 1088, 1101
PspPI	GGNCC	2 cut(s)	476, 1033
PstI	CTGCAG	2 cut(s)	250, 1079
PstNI	CAGNNNCTG	1 cut(s)	1083
PvuII	CAGCTG	1 cut(s)	315
RsaI	GTAC	2 cut(s)	432, 1019
RsaNI	GTAC	2 cut(s)	431, 1018
RseI	CAYNNNNRTG	2 cut(s)	248, 900
SaqAI	TTAA	3 cut(s)	111, 132, 782
SatI	GCNGC	4 cut(s)	316, 875, 1049, 1078
Sau3AI	GATC	2 cut(s)	199, 670
Sau96I	GGNCC	2 cut(s)	476, 1033
SchI	GAGTC	5 cut(s)	95, 215, 422, 655, 747
ScrFI	CCNGG	2 cut(s)	1037, 1095
SduI	GDGCHC	3 cut(s)	245, 535, 1008
SfaNI	GCATC	3 cut(s)	48, 325, 848
SfcI	CTRYAG	2 cut(s)	246, 1075
SfuI	TTCGAA	2 cut(s)	817, 994
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	248, 900
Sse9I	AATT	6 cut(s)	154, 344, 516, 548, 576, 810
SspMI	CTAG	7 cut(s)	327, 419, 542, 788, 831, 881, 920
StyD4I	CCNGG	2 cut(s)	1035, 1093
StyI	CCWWGG	3 cut(s)	326, 483, 830
TaqI	TCGA	4 cut(s)	454, 677, 817, 994
TasI	AATT	6 cut(s)	154, 344, 516, 548, 576, 810
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	5 cut(s)	278, 389, 403, 644, 1120
Tru1I	TTAA	3 cut(s)	111, 132, 782
Tru9I	TTAA	3 cut(s)	111, 132, 782
TscAI	CASTG	5 cut(s)	250, 255, 413, 659, 1088
TseFI	GTSAC	4 cut(s)	250, 463, 825, 893
TseI	GCWGC	4 cut(s)	315, 874, 1048, 1077
Tsp45I	GTSAC	4 cut(s)	250, 463, 825, 893
TspDTI	ATGAA	6 cut(s)	20, 34, 132, 141, 516, 740
TspRI	CASTG	5 cut(s)	250, 255, 413, 659, 1088
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	3 cut(s)	154, 344, 576
XceI	RCATGY	2 cut(s)	826, 905
XmaJI	CCTAGG	2 cut(s)	326, 830
XspI	CTAG	7 cut(s)	327, 419, 542, 788, 831, 881, 920
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.