Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Forward (+)

19929738 .. 19931652

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g21700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGATAATTGGATATGGTCCCATCACACCGCAAGTCATGCCTTCGATGCTACAATTCTCATCATATACAATCATCAAGGCCCCTGCATGCAGCTTACAAAATGCTTATTTTCTTTGCTGGGGAGACTAATTCAATCTTCCCCTAGCTTTGGAATGCGGAAATCAATGAGCAAACCAAAGCTTCAACTCCTCTTCTTGTTCAGCATCTTCATTGTCTTTCTATGCTTCTTTCAGGGGAAGTCATCACCTCTTGAGCTAGAAGATGACTCTTGGCTTGATGAAGAAGAGGATGCTGTGAACATGGTTGAGAGCCACCAAAGTTCAAGGAGGAGATGTGAGCTTTCCGCCGGAAAATGGGTTTACGATCAATCGTACCCTCTCTATGACTCGACTTGTCCGTATCTTAGCACTGCAGTGACTTGTCAAAAGAATGGAAGGCCGGATTCGGACTACGAAAAATGGAGGTGGAAGCCAAACAGCTGCTCCATTCCAAGGTTTGATGCATTGAAATTTCTTGGAAAAATGAGAAGGAAAAGAATAATGCTGGTTGGTGATTCTATAATGAGGAATCAGTGGGAGTCCCTAGTGTGCTTAGTACAAGGAGTTGTTCCAACTGGAAGAAAGAGAGTGACCTACAATGGCCCCTCTATGGCATTCCATGCAACGGATTTTGAGACATCAGTTGAGTTTTCATGGGCTCCACTCCTAGTAGAGTTGAACCAAGGAGCTGACAAAAAGAGAATTTTACATTTGGACTTGATAGAAGAGAATGCAAAGTACTGGAGAGGAGTTGATGTTCTTGTGTTTGATTCTGCTCACTGGTGGACTCACTCTGACAAATCGAGTTCGTGGGATTACTACATGGAAGGACAGTCTCTGTACACAAACATGAATCCAATGGTTGCATACCAAAAAGGACTTACTACATGGGCTAAATGGATTGATTTAAACCTAGATCCTCGAAAAACCCGAGTGATTTTTCGAAGCATGTCACCTAGGCACAACAGACAAAATGGTTGGAGATGCTATAATCAGAAGCAGCCTCTGGCTTATTTCAGTCACCAACATGTTCCTGAGCCATTGATAGTGCTGCAAACTGTATTGAGAAATATGAGATTTCCAGTATATCTTCAGGACATAACTACAATGTCAGCATTTCGAAGAGACGGGCACCCTTCTGTGTACAGAAGGGCCATGGGGCAAGAAGAGAGGCAGCACCCAAGAGGCTTATCCTCTGACTGCAGCCATTGGTGCCTTCCTGGGGTGCCTGATAGTTGGAATGAGATGTTGAGTGCCTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

435

Amino Acids

50.7

Weight (kDa)

8.76

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	1170, 1251, 1264
AciI	CCGC	3 cut(s)	30, 157, 345
AclWI	GGATC	1 cut(s)	950
AcsI	RAATTY	2 cut(s)	509, 741
AcuI	CTGAAG	1 cut(s)	1115
AfaI	GTAC	5 cut(s)	374, 597, 779, 881, 1184
AfiI	CCNNNNNNNGG	6 cut(s)	149, 354, 492, 649, 664, 1261
AflIII	ACRYGT	1 cut(s)	1066
AgsI	TTSAA	5 cut(s)	134, 185, 324, 508, 718
AjnI	CCWGG	1 cut(s)	1258
AleI	CACNNNNGTG	1 cut(s)	413
AloI	GAACNNNNNNTCC	2 cut(s)	780, 812
AluBI	AGCT	7 cut(s)	94, 147, 181, 256, 340, 480, 728
AluI	AGCT	7 cut(s)	94, 147, 181, 256, 340, 480, 728
Alw26I	GTCTC	4 cut(s)	118, 668, 879, 1158
AlwI	GGATC	1 cut(s)	950
AlwNI	CAGNNNCTG	2 cut(s)	877, 1045
Ama87I	CYCGRG	1 cut(s)	969
AoxI	GGCC	4 cut(s)	79, 437, 640, 1191
ApeKI	GCWGC	6 cut(s)	91, 480, 1039, 1090, 1213, 1242
ApoI	RAATTY	2 cut(s)	509, 741
AspA2I	CCTAGG	1 cut(s)	995
AspS9I	GGNCC	4 cut(s)	18, 80, 641, 1191
AsuHPI	GGTGA	4 cut(s)	237, 563, 984, 1052
AsuII	TTCGAA	2 cut(s)	982, 1159
AvaI	CYCGRG	1 cut(s)	969
AvaII	GGWCC	1 cut(s)	18
AvrII	CCTAGG	1 cut(s)	995
BaeGI	GKGCMC	1 cut(s)	1173
BanI	GGYRCC	3 cut(s)	1170, 1251, 1264
BanII	GRGCYC	1 cut(s)	700
BbvI	GCAGC	6 cut(s)	103, 467, 1051, 1077, 1225, 1254
BccI	CCATC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	1260
BcoDI	GTCTC	4 cut(s)	118, 668, 879, 1158
BfaI	CTAG	6 cut(s)	144, 257, 584, 707, 953, 996
BfmI	CTRYAG	2 cut(s)	411, 1240
BisI	GCNGC	6 cut(s)	92, 481, 1040, 1091, 1214, 1243
BlnI	CCTAGG	1 cut(s)	995
BlsI	GCNGC	6 cut(s)	93, 482, 1041, 1092, 1215, 1244
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	1 cut(s)	1260
Bme18I	GGWCC	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	969
BmgT120I	GGNCC	4 cut(s)	18, 80, 641, 1191
BmiI	GGNNCC	7 cut(s)	20, 82, 643, 699, 1172, 1253, 1266
BmrFI	CCNGG	1 cut(s)	1260
BmsI	GCATC	5 cut(s)	37, 213, 280, 490, 1013
BpmI	CTGGAG	1 cut(s)	802
Bpu10I	CCTNAGC	1 cut(s)	1074
Bpu14I	TTCGAA	2 cut(s)	982, 1159
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	5 cut(s)	491, 721, 995, 1194, 1259
BsaXI	ACNNNNNCTCC	6 cut(s)	319, 349, 467, 497, 780, 810
Bsc4I	CCNNNNNNNGG	6 cut(s)	149, 354, 492, 649, 664, 1261
Bse1I	ACTGG	4 cut(s)	619, 785, 824, 1121
BseBI	CCWGG	1 cut(s)	1260
BseDI	CCNNGG	5 cut(s)	491, 721, 995, 1194, 1259
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	6 cut(s)	149, 354, 492, 649, 664, 1261
BseMII	CTCAG	1 cut(s)	1065
BseNI	ACTGG	4 cut(s)	619, 785, 824, 1121
BseRI	GAGGAG	3 cut(s)	179, 343, 801
BseSI	GKGCMC	1 cut(s)	1173
BseXI	GCAGC	6 cut(s)	103, 467, 1051, 1077, 1225, 1254
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	4 cut(s)	81, 439, 642, 1193
BshNI	GGYRCC	3 cut(s)	1170, 1251, 1264
BsiHKCI	CYCGRG	1 cut(s)	969
BsiSI	CCGG	2 cut(s)	348, 440
BslFI	GGGAC	2 cut(s)	4, 565
BslI	CCNNNNNNNGG	6 cut(s)	149, 354, 492, 649, 664, 1261
BsmAI	GTCTC	4 cut(s)	118, 668, 879, 1158
BsmBI	CGTCTC	1 cut(s)	1158
BsmFI	GGGAC	2 cut(s)	4, 565
BsmI	GAATGC	3 cut(s)	159, 653, 775
BsnI	GGCC	4 cut(s)	81, 439, 642, 1193
BsoBI	CYCGRG	1 cut(s)	969
Bsp119I	TTCGAA	2 cut(s)	982, 1159
Bsp1286I	GDGCHC	2 cut(s)	700, 1173
Bsp1407I	TGTACA	2 cut(s)	879, 1182
Bsp143I	GATC	2 cut(s)	364, 955
Bsp19I	CCATGG	1 cut(s)	1194
BspACI	CCGC	3 cut(s)	30, 157, 345
BspANI	GGCC	4 cut(s)	81, 439, 642, 1193
BspCNI	CTCAG	1 cut(s)	1066
BspLI	GGNNCC	7 cut(s)	20, 82, 643, 699, 1172, 1253, 1266
BspMAI	CTGCAG	2 cut(s)	415, 1244
BspPI	GGATC	1 cut(s)	950
BspT104I	TTCGAA	2 cut(s)	982, 1159
BspT107I	GGYRCC	3 cut(s)	1170, 1251, 1264
BsrGI	TGTACA	2 cut(s)	879, 1182
BsrI	ACTGG	4 cut(s)	619, 785, 824, 1121
BssECI	CCNNGG	5 cut(s)	491, 721, 995, 1194, 1259
BssMI	GATC	2 cut(s)	364, 955
BssT1I	CCWWGG	4 cut(s)	491, 721, 995, 1194
Bst2UI	CCWGG	1 cut(s)	1260
Bst4CI	ACNGT	2 cut(s)	873, 1099
Bst6I	CTCTTC	5 cut(s)	197, 279, 759, 1156, 1200
BstAPI	GCANNNNNTGC	2 cut(s)	38, 659
BstAUI	TGTACA	2 cut(s)	879, 1182
BstBI	TTCGAA	2 cut(s)	982, 1159
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	404, 592, 1074
BstDSI	CCRYGG	1 cut(s)	1194
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	2 cut(s)	367, 958
BstMAI	GTCTC	4 cut(s)	118, 668, 879, 1158
BstMBI	GATC	2 cut(s)	364, 955
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 659, 1251
BstNI	CCWGG	1 cut(s)	1260
BstNSI	RCATGY	3 cut(s)	91, 991, 1070
BstSCI	CCNGG	1 cut(s)	1258
BstSFI	CTRYAG	2 cut(s)	411, 1240
BstSLI	GKGCMC	1 cut(s)	1173
BstV1I	GCAGC	6 cut(s)	103, 467, 1051, 1077, 1225, 1254
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BsuRI	GGCC	4 cut(s)	81, 439, 642, 1193
BtgI	CCRYGG	1 cut(s)	1194
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	2 cut(s)	408, 420
BtsIMutI	CAGTG	4 cut(s)	408, 420, 578, 817
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	2 cut(s)	877, 1045
Cfr13I	GGNCC	4 cut(s)	18, 80, 641, 1191
Csp6I	GTAC	5 cut(s)	373, 596, 778, 880, 1183
CviQI	GTAC	5 cut(s)	373, 596, 778, 880, 1183
DdeI	CTNAG	3 cut(s)	404, 592, 1074
DpnI	GATC	2 cut(s)	366, 957
DpnII	GATC	2 cut(s)	364, 955
DraI	TTTAAA	1 cut(s)	948
Eam1104I	CTCTTC	5 cut(s)	197, 279, 759, 1156, 1200
EarI	CTCTTC	5 cut(s)	197, 279, 759, 1156, 1200
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	4 cut(s)	491, 721, 995, 1194
Eco24I	GRGCYC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	1115
Eco88I	CYCGRG	1 cut(s)	969
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	1258
EcoT14I	CCWWGG	4 cut(s)	491, 721, 995, 1194
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	700
ErhI	CCWWGG	4 cut(s)	491, 721, 995, 1194
Esp3I	CGTCTC	1 cut(s)	1158
FaqI	GGGAC	2 cut(s)	4, 565
Fnu4HI	GCNGC	6 cut(s)	92, 481, 1040, 1091, 1214, 1243
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	6 cut(s)	92, 481, 1040, 1091, 1214, 1243
FspBI	CTAG	6 cut(s)	144, 257, 584, 707, 953, 996
GluI	GCNGC	6 cut(s)	92, 481, 1040, 1091, 1214, 1243
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	81, 439, 642, 1193
HapII	CCGG	2 cut(s)	348, 440
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	9 cut(s)	266, 386, 443, 554, 568, 578, 809, 826, 892
HpaII	CCGG	2 cut(s)	348, 440
HphI	GGTGA	4 cut(s)	237, 563, 984, 1052
Hpy166II	GTNNAC	5 cut(s)	298, 361, 825, 882, 1183
Hpy188I	TCNGA	4 cut(s)	448, 835, 1035, 1237
Hpy188III	TCNNGA	3 cut(s)	251, 1073, 1133
Hpy8I	GTNNAC	5 cut(s)	298, 361, 825, 882, 1183
HpyAV	CCTTC	7 cut(s)	52, 429, 522, 860, 1182, 1185, 1265
HpyCH4III	ACNGT	2 cut(s)	873, 1099
HpyCH4V	TGCA	9 cut(s)	87, 91, 413, 503, 662, 773, 905, 1093, 1242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 659, 1251
HpyF3I	CTNAG	3 cut(s)	404, 592, 1074
Kzo9I	GATC	2 cut(s)	364, 955
LmnI	GCTCC	3 cut(s)	488, 703, 725
Lsp1109I	GCAGC	6 cut(s)	103, 467, 1051, 1077, 1225, 1254
LweI	GCATC	5 cut(s)	37, 213, 280, 490, 1013
MaeI	CTAG	6 cut(s)	144, 257, 584, 707, 953, 996
MaeIII	GTNAC	4 cut(s)	415, 628, 990, 1058
MalI	GATC	2 cut(s)	366, 957
MboI	GATC	2 cut(s)	364, 955
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	2 cut(s)	700, 1173
MluCI	AATT	5 cut(s)	7, 54, 129, 509, 741
MlyI	GAGTC	4 cut(s)	260, 380, 587, 820
MmeI	TCCRAC	3 cut(s)	635, 998, 1256
Mph1103I	ATGCAT	1 cut(s)	505
MseI	TTAA	2 cut(s)	947, 1303
MslI	CAYNNNNRTG	3 cut(s)	413, 887, 1065
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	2 cut(s)	348, 440
MspR9I	CCNGG	1 cut(s)	1260
Mva1269I	GAATGC	3 cut(s)	159, 653, 775
MvaI	CCWGG	1 cut(s)	1260
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 659, 1251
NcoI	CCATGG	1 cut(s)	1194
NdeII	GATC	2 cut(s)	364, 955
NlaIV	GGNNCC	7 cut(s)	20, 82, 643, 699, 1172, 1253, 1266
NmuCI	GTSAC	4 cut(s)	415, 628, 990, 1058
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	3 cut(s)	91, 991, 1070
NspV	TTCGAA	2 cut(s)	982, 1159
OliI	CACNNNNGTG	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	91
PciI	ACATGT	1 cut(s)	1066
PcsI	WCGNNNNNNNCGW	2 cut(s)	395, 967
PctI	GAATGC	3 cut(s)	159, 653, 775
PfeI	GAWTC	5 cut(s)	443, 554, 568, 809, 892
PkrI	GCNGC	6 cut(s)	93, 482, 1041, 1092, 1215, 1244
PleI	GAGTC	4 cut(s)	260, 380, 586, 820
PpsI	GAGTC	4 cut(s)	260, 380, 586, 820
PscI	ACATGT	1 cut(s)	1066
Psp6I	CCWGG	1 cut(s)	1258
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	1258
PspN4I	GGNNCC	7 cut(s)	20, 82, 643, 699, 1172, 1253, 1266
PspPI	GGNCC	4 cut(s)	18, 80, 641, 1191
PstI	CTGCAG	2 cut(s)	415, 1244
PstNI	CAGNNNCTG	2 cut(s)	877, 1045
PsuI	RGATCY	1 cut(s)	955
PvuII	CAGCTG	1 cut(s)	480
RsaI	GTAC	5 cut(s)	374, 597, 779, 881, 1184
RsaNI	GTAC	5 cut(s)	373, 596, 778, 880, 1183
RseI	CAYNNNNRTG	3 cut(s)	413, 887, 1065
SaqAI	TTAA	2 cut(s)	947, 1303
SatI	GCNGC	6 cut(s)	92, 481, 1040, 1091, 1214, 1243
Sau3AI	GATC	2 cut(s)	364, 955
Sau96I	GGNCC	4 cut(s)	18, 80, 641, 1191
ScaI	AGTACT	1 cut(s)	779
SchI	GAGTC	4 cut(s)	260, 380, 587, 820
ScrFI	CCNGG	1 cut(s)	1260
SduI	GDGCHC	2 cut(s)	700, 1173
SfaNI	GCATC	5 cut(s)	37, 213, 280, 490, 1013
SfcI	CTRYAG	2 cut(s)	411, 1240
SfuI	TTCGAA	2 cut(s)	982, 1159
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	3 cut(s)	413, 887, 1065
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	91
Sse9I	AATT	5 cut(s)	7, 54, 129, 509, 741
SsiI	CCGC	3 cut(s)	30, 157, 345
SspMI	CTAG	6 cut(s)	144, 257, 584, 707, 953, 996
StyD4I	CCNGG	1 cut(s)	1258
StyI	CCWWGG	4 cut(s)	491, 721, 995, 1194
TaaI	ACNGT	2 cut(s)	873, 1099
TaqI	TCGA	6 cut(s)	45, 389, 842, 961, 982, 1159
TasI	AATT	5 cut(s)	7, 54, 129, 509, 741
TatI	WGTACW	4 cut(s)	595, 777, 879, 1182
TfiI	GAWTC	5 cut(s)	443, 554, 568, 809, 892
Tru1I	TTAA	2 cut(s)	947, 1303
Tru9I	TTAA	2 cut(s)	947, 1303
TscAI	CASTG	4 cut(s)	415, 420, 578, 824
TseFI	GTSAC	4 cut(s)	415, 628, 990, 1058
TseI	GCWGC	6 cut(s)	91, 480, 1039, 1090, 1213, 1242
Tsp45I	GTSAC	4 cut(s)	415, 628, 990, 1058
TspDTI	ATGAA	4 cut(s)	199, 294, 681, 905
TspGWI	ACGGA	2 cut(s)	387, 680
TspRI	CASTG	4 cut(s)	415, 420, 578, 824
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	2 cut(s)	509, 741
XceI	RCATGY	3 cut(s)	91, 991, 1070
XmaJI	CCTAGG	1 cut(s)	995
XspI	CTAG	6 cut(s)	144, 257, 584, 707, 953, 996
ZrmI	AGTACT	1 cut(s)	779
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.